Wall clock time and date at job start Tue Mar 31 2020 19:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00112 * 2 1 4 4 C 1.53001 * 109.46957 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47239 * 63.71712 * 4 3 2 6 6 C 1.37103 * 119.99522 * 263.51451 * 5 4 3 7 7 H 1.08001 * 119.99573 * 143.58847 * 6 5 4 8 8 C 1.38948 * 120.00144 * 323.58991 * 6 5 4 9 9 N 1.31410 * 120.00121 * 160.82560 * 8 6 5 10 10 Si 1.86805 * 119.99797 * 340.82047 * 8 6 5 11 11 H 1.48495 * 109.46897 * 94.08633 * 10 8 6 12 12 H 1.48499 * 109.46809 * 214.08511 * 10 8 6 13 13 H 1.48500 * 109.47322 * 334.08523 * 10 8 6 14 14 C 1.34773 * 120.00266 * 83.51547 * 5 4 3 15 15 O 1.21287 * 120.00103 * 359.97438 * 14 5 4 16 16 C 1.50706 * 119.99672 * 180.02562 * 14 5 4 17 17 C 1.53002 * 109.46706 * 179.97438 * 16 14 5 18 18 C 1.50704 * 109.47076 * 179.97438 * 17 16 14 19 19 C 1.37963 * 120.07377 * 98.30205 * 18 17 16 20 20 C 1.38346 * 120.14824 * 179.97438 * 19 18 17 21 21 C 1.38394 * 120.30601 * 0.04058 * 20 19 18 22 22 C 1.37925 * 120.14786 * 0.02562 * 21 20 19 23 23 C 1.39603 * 120.07506 * 278.02940 * 18 17 16 24 24 C 1.47726 * 120.15362 * 359.97438 * 23 18 17 25 25 O 1.21472 * 119.99851 * 1.94695 * 24 23 18 26 26 O 1.34707 * 120.00260 * 181.94558 * 24 23 18 27 27 C 1.45206 * 117.00068 * 180.02562 * 26 24 23 28 28 H 1.09000 * 109.46986 * 299.99809 * 1 2 3 29 29 H 1.08999 * 109.46631 * 59.99442 * 1 2 3 30 30 H 1.08995 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46992 * 60.00348 * 3 2 1 32 32 H 1.09005 * 109.47322 * 299.99753 * 3 2 1 33 33 H 1.08993 * 109.47494 * 303.71060 * 4 3 2 34 34 H 1.09003 * 109.47122 * 183.71136 * 4 3 2 35 35 H 0.96996 * 120.00396 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46880 * 60.00319 * 16 14 5 37 37 H 1.08997 * 109.47434 * 299.99712 * 16 14 5 38 38 H 1.09001 * 109.46817 * 60.00738 * 17 16 14 39 39 H 1.08997 * 109.47312 * 300.00244 * 17 16 14 40 40 H 1.07994 * 119.92899 * 0.02562 * 19 18 17 41 41 H 1.08006 * 119.84840 * 180.02562 * 20 19 18 42 42 H 1.07991 * 119.92691 * 179.97438 * 21 20 19 43 43 H 1.07993 * 120.07775 * 179.97438 * 22 21 20 44 44 H 1.08999 * 109.46922 * 179.97438 * 27 26 24 45 45 H 1.08993 * 109.46748 * 299.99609 * 27 26 24 46 46 H 1.08996 * 109.47071 * 59.99609 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9735 0.5365 -1.2394 6 6 4.2227 -0.8116 -1.2566 7 1 3.9723 -1.3958 -2.1298 8 6 4.7973 -1.4261 -0.1508 9 7 4.6978 -2.7273 0.0034 10 14 5.7114 -0.4025 1.1166 11 1 4.7860 -0.0383 2.2194 12 1 6.8467 -1.1889 1.6624 13 1 6.2281 0.8333 0.4755 14 6 4.1315 1.2655 -2.3619 15 8 3.9106 2.4579 -2.3467 16 6 4.5815 0.5986 -3.6362 17 6 4.6798 1.6422 -4.7507 18 6 5.1304 0.9755 -6.0249 19 6 4.2042 0.6165 -6.9823 20 6 4.6162 0.0048 -8.1528 21 6 5.9584 -0.2518 -8.3716 22 6 6.8948 0.1006 -7.4223 23 6 6.4866 0.7250 -6.2417 24 6 7.4847 1.1126 -5.2240 25 8 7.1231 1.6184 -4.1804 26 8 8.7958 0.9052 -5.4531 27 6 9.7198 1.3102 -4.4087 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8530 0.5872 0.8539 34 1 3.9788 2.1782 0.0659 35 1 5.0986 -3.1563 0.7755 36 1 3.8603 -0.1681 -3.9194 37 1 5.5578 0.1394 -3.4809 38 1 5.4009 2.4091 -4.4678 39 1 3.7034 2.1011 -4.9059 40 1 3.1553 0.8140 -6.8180 41 1 3.8870 -0.2738 -8.8992 42 1 6.2732 -0.7299 -9.2874 43 1 7.9419 -0.1006 -7.5941 44 1 10.7403 1.0874 -4.7200 45 1 9.6195 2.3807 -4.2301 46 1 9.4929 0.7661 -3.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457198541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:28 Heat of formation + Delta-G solvation = -120.179360 kcal Electronic energy + Delta-G solvation = -29896.805300 eV Core-core repulsion = 25752.847447 eV Total energy + Delta-G solvation = -4143.957853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61825 -39.00117 -38.63602 -37.02572 -36.33408 -34.78160 -33.39456 -31.84954 -31.49820 -30.13253 -28.80937 -27.61945 -25.86335 -25.00829 -24.20308 -23.55789 -22.24493 -21.37916 -20.38582 -18.77233 -17.81661 -16.91293 -16.81639 -16.41661 -16.15101 -15.79478 -15.70533 -15.29325 -15.18014 -14.65510 -14.55316 -14.45003 -14.00380 -13.80714 -13.41993 -13.30037 -12.94450 -12.79042 -12.60093 -12.39217 -12.16423 -12.04120 -11.75173 -11.68492 -11.53411 -11.43927 -11.14648 -10.94821 -10.82836 -10.75328 -10.62993 -10.33369 -10.00520 -9.79895 -9.67689 -9.08473 -9.04354 -9.03439 -8.75981 -8.37416 -7.69483 -6.31322 -3.88136 0.76331 1.35299 2.69325 2.78902 3.12728 3.28197 3.36843 3.78286 3.87467 4.24022 4.39309 4.54037 4.71854 4.85173 4.89927 5.00901 5.16468 5.18315 5.27249 5.31890 5.41812 5.57926 5.63142 5.69031 5.72883 5.83293 5.83793 5.89521 5.93620 5.99411 6.03098 6.07017 6.18069 6.27113 6.30747 6.35750 6.43519 6.46889 6.49546 6.60759 6.82616 6.90324 7.01785 7.46222 7.83840 7.94770 8.21974 8.38406 9.11018 9.50224 9.82182 10.80319 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011504 B = 0.004108 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.427024 B = 6814.357691 C = 7955.262976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.055 3.945 4 C 0.101 3.899 5 N -0.458 5.458 6 C -0.323 4.323 7 H 0.102 0.898 8 C 0.068 3.932 9 N -0.864 5.864 10 Si 0.874 3.126 11 H -0.275 1.275 12 H -0.290 1.290 13 H -0.262 1.262 14 C 0.486 3.514 15 O -0.604 6.604 16 C -0.098 4.098 17 C -0.079 4.079 18 C -0.004 4.004 19 C -0.131 4.131 20 C -0.082 4.082 21 C -0.146 4.146 22 C -0.062 4.062 23 C -0.126 4.126 24 C 0.497 3.503 25 O -0.475 6.475 26 O -0.361 6.361 27 C 0.037 3.963 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.272 0.728 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 4.808 -12.485 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.023 4.023 4 C -0.023 4.023 5 N -0.178 5.178 6 C -0.450 4.450 7 H 0.120 0.880 8 C -0.138 4.138 9 N -0.500 5.500 10 Si 0.702 3.298 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.187 1.187 14 C 0.276 3.724 15 O -0.490 6.490 16 C -0.138 4.138 17 C -0.116 4.116 18 C -0.004 4.004 19 C -0.149 4.149 20 C -0.101 4.101 21 C -0.164 4.164 22 C -0.080 4.080 23 C -0.127 4.127 24 C 0.341 3.659 25 O -0.362 6.362 26 O -0.279 6.279 27 C -0.057 4.057 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.153 0.847 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.532 5.190 -12.001 13.318 hybrid contribution 0.312 0.394 1.033 1.149 sum 2.845 5.584 -10.968 12.632 Atomic orbital electron populations 1.22656 0.83072 1.02038 0.98744 1.88203 1.17654 1.26812 1.95027 1.22876 0.95091 0.85065 0.99302 1.21719 0.92156 0.98504 0.89881 1.43654 1.58394 1.08543 1.07234 1.18965 1.40457 0.80725 1.04876 0.88019 1.25228 0.96017 0.95249 0.97294 1.69737 1.41651 1.09406 1.29230 0.87026 0.79772 0.81220 0.81755 1.20269 1.21760 1.18654 1.20305 0.79859 0.86158 0.86030 1.90504 1.56751 1.15480 1.86279 1.21145 1.03236 0.97496 0.91879 1.20736 1.02629 0.98627 0.89650 1.20248 0.90975 0.93146 0.96070 1.21092 0.99776 1.00322 0.93693 1.21405 0.96058 0.95811 0.96780 1.21075 0.93125 1.02402 0.99795 1.21410 1.00358 0.94343 0.91872 1.18968 0.91762 1.06800 0.95166 1.21262 0.81870 0.76356 0.86414 1.90934 1.80050 1.39088 1.26127 1.86494 1.17457 1.77093 1.46810 1.23249 0.91180 1.00884 0.90351 0.95185 0.94925 0.90115 0.94048 0.93124 0.90664 0.90206 0.91825 0.90540 0.89156 0.87822 0.91127 0.84981 0.85553 0.85479 0.84734 0.88313 0.91928 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.36 -7.96 10.43 -35.23 -0.37 -8.32 16 3 C 0.05 1.14 6.24 37.16 0.23 1.37 16 4 C 0.10 2.37 4.28 -4.04 -0.02 2.36 16 5 N -0.46 -11.68 2.17 -114.81 -0.25 -11.93 16 6 C -0.32 -8.84 8.93 -14.93 -0.13 -8.97 16 7 H 0.10 2.91 7.19 -52.49 -0.38 2.54 16 8 C 0.07 1.89 5.33 -17.47 -0.09 1.80 16 9 N -0.86 -24.90 13.96 55.50 0.77 -24.12 16 10 Si 0.87 21.60 24.81 -169.99 -4.22 17.39 16 11 H -0.28 -6.55 6.65 56.52 0.38 -6.18 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.26 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.49 11.94 7.58 -10.98 -0.08 11.86 16 15 O -0.60 -15.54 15.67 5.55 0.09 -15.45 16 16 C -0.10 -2.08 3.92 -27.88 -0.11 -2.19 16 17 C -0.08 -1.45 3.90 -27.88 -0.11 -1.56 16 18 C 0.00 -0.06 5.17 -104.21 -0.54 -0.60 16 19 C -0.13 -1.65 9.66 -39.64 -0.38 -2.03 16 20 C -0.08 -0.86 10.04 -39.48 -0.40 -1.25 16 21 C -0.15 -1.48 10.03 -39.64 -0.40 -1.88 16 22 C -0.06 -0.73 9.62 -39.17 -0.38 -1.11 16 23 C -0.13 -1.87 5.87 -104.98 -0.62 -2.49 16 24 C 0.50 8.15 7.75 34.61 0.27 8.42 16 25 O -0.47 -9.32 11.51 -19.24 -0.22 -9.54 16 26 O -0.36 -5.04 9.82 -40.51 -0.40 -5.43 16 27 C 0.04 0.43 10.57 101.05 1.07 1.49 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.84 3.18 -51.93 -0.17 1.67 16 34 H 0.08 1.81 7.63 -51.93 -0.40 1.41 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 1.57 7.66 -51.93 -0.40 1.17 16 37 H 0.09 2.04 6.68 -51.93 -0.35 1.70 16 38 H 0.10 2.11 5.79 -51.93 -0.30 1.81 16 39 H 0.07 1.24 7.98 -51.93 -0.41 0.83 16 40 H 0.13 1.47 8.05 -52.49 -0.42 1.05 16 41 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.13 1.35 7.61 -52.49 -0.40 0.95 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -33.75 380.42 -6.04 -39.79 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.61 Total: 5.03 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -0.57 Total: 6.86 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.53 Total: -36.05 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.90 Total: -38.75 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.22 Total: 17.39 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.75 -6.04 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457198541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.390 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds