Wall clock time and date at job start Tue Mar 31 2020 19:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00112 * 2 1 4 4 C 1.53001 * 109.46957 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47239 * 63.71712 * 4 3 2 6 6 C 1.37103 * 119.99522 * 263.51451 * 5 4 3 7 7 H 1.08001 * 119.99573 * 143.58847 * 6 5 4 8 8 C 1.38948 * 120.00144 * 323.58991 * 6 5 4 9 9 N 1.31410 * 120.00121 * 160.82560 * 8 6 5 10 10 Si 1.86805 * 119.99797 * 340.82047 * 8 6 5 11 11 H 1.48495 * 109.46897 * 94.08633 * 10 8 6 12 12 H 1.48499 * 109.46809 * 214.08511 * 10 8 6 13 13 H 1.48500 * 109.47322 * 334.08523 * 10 8 6 14 14 C 1.34773 * 120.00266 * 83.51547 * 5 4 3 15 15 O 1.21287 * 120.00103 * 359.97438 * 14 5 4 16 16 C 1.50706 * 119.99672 * 180.02562 * 14 5 4 17 17 C 1.53002 * 109.46706 * 179.97438 * 16 14 5 18 18 C 1.50704 * 109.47076 * 179.97438 * 17 16 14 19 19 C 1.37963 * 120.07377 * 98.30205 * 18 17 16 20 20 C 1.38346 * 120.14824 * 179.97438 * 19 18 17 21 21 C 1.38394 * 120.30601 * 0.04058 * 20 19 18 22 22 C 1.37925 * 120.14786 * 0.02562 * 21 20 19 23 23 C 1.39603 * 120.07506 * 278.02940 * 18 17 16 24 24 C 1.47726 * 120.15362 * 359.97438 * 23 18 17 25 25 O 1.21472 * 119.99851 * 1.94695 * 24 23 18 26 26 O 1.34707 * 120.00260 * 181.94558 * 24 23 18 27 27 C 1.45206 * 117.00068 * 180.02562 * 26 24 23 28 28 H 1.09000 * 109.46986 * 299.99809 * 1 2 3 29 29 H 1.08999 * 109.46631 * 59.99442 * 1 2 3 30 30 H 1.08995 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46992 * 60.00348 * 3 2 1 32 32 H 1.09005 * 109.47322 * 299.99753 * 3 2 1 33 33 H 1.08993 * 109.47494 * 303.71060 * 4 3 2 34 34 H 1.09003 * 109.47122 * 183.71136 * 4 3 2 35 35 H 0.96996 * 120.00396 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46880 * 60.00319 * 16 14 5 37 37 H 1.08997 * 109.47434 * 299.99712 * 16 14 5 38 38 H 1.09001 * 109.46817 * 60.00738 * 17 16 14 39 39 H 1.08997 * 109.47312 * 300.00244 * 17 16 14 40 40 H 1.07994 * 119.92899 * 0.02562 * 19 18 17 41 41 H 1.08006 * 119.84840 * 180.02562 * 20 19 18 42 42 H 1.07991 * 119.92691 * 179.97438 * 21 20 19 43 43 H 1.07993 * 120.07775 * 179.97438 * 22 21 20 44 44 H 1.08999 * 109.46922 * 179.97438 * 27 26 24 45 45 H 1.08993 * 109.46748 * 299.99609 * 27 26 24 46 46 H 1.08996 * 109.47071 * 59.99609 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9735 0.5365 -1.2394 6 6 4.2227 -0.8116 -1.2566 7 1 3.9723 -1.3958 -2.1298 8 6 4.7973 -1.4261 -0.1508 9 7 4.6978 -2.7273 0.0034 10 14 5.7114 -0.4025 1.1166 11 1 4.7860 -0.0383 2.2194 12 1 6.8467 -1.1889 1.6624 13 1 6.2281 0.8333 0.4755 14 6 4.1315 1.2655 -2.3619 15 8 3.9106 2.4579 -2.3467 16 6 4.5815 0.5986 -3.6362 17 6 4.6798 1.6422 -4.7507 18 6 5.1304 0.9755 -6.0249 19 6 4.2042 0.6165 -6.9823 20 6 4.6162 0.0048 -8.1528 21 6 5.9584 -0.2518 -8.3716 22 6 6.8948 0.1006 -7.4223 23 6 6.4866 0.7250 -6.2417 24 6 7.4847 1.1126 -5.2240 25 8 7.1231 1.6184 -4.1804 26 8 8.7958 0.9052 -5.4531 27 6 9.7198 1.3102 -4.4087 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8530 0.5872 0.8539 34 1 3.9788 2.1782 0.0659 35 1 5.0986 -3.1563 0.7755 36 1 3.8603 -0.1681 -3.9194 37 1 5.5578 0.1394 -3.4809 38 1 5.4009 2.4091 -4.4678 39 1 3.7034 2.1011 -4.9059 40 1 3.1553 0.8140 -6.8180 41 1 3.8870 -0.2738 -8.8992 42 1 6.2732 -0.7299 -9.2874 43 1 7.9419 -0.1006 -7.5941 44 1 10.7403 1.0874 -4.7200 45 1 9.6195 2.3807 -4.2301 46 1 9.4929 0.7661 -3.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457198541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:27 Heat of formation + Delta-G solvation = -141.369629 kcal Electronic energy + Delta-G solvation = -29897.724179 eV Core-core repulsion = 25752.847447 eV Total energy + Delta-G solvation = -4144.876732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.81201 -40.78917 -39.79069 -38.65234 -37.56242 -36.73581 -34.78231 -33.94923 -32.48067 -31.69728 -30.25996 -28.63769 -27.29283 -26.91239 -25.70959 -24.73095 -23.78468 -22.59669 -21.54153 -20.79352 -18.91748 -18.83719 -18.25623 -17.93317 -17.56544 -17.36664 -17.07438 -16.70316 -16.50252 -16.30641 -16.04241 -15.75927 -15.48229 -15.43617 -14.71952 -14.64497 -14.45241 -14.30709 -14.00548 -13.73653 -13.68880 -13.45889 -13.20922 -13.15800 -13.05048 -12.77880 -12.62401 -12.58028 -12.38312 -12.17251 -11.97767 -11.92419 -11.71729 -11.71301 -11.13122 -11.00562 -10.64067 -10.39890 -9.99011 -9.75242 -9.71156 -8.46277 -6.04835 -0.26945 0.40099 1.14253 1.25829 1.37470 1.55891 1.71353 1.89449 2.17859 2.56267 2.83545 2.88266 3.10946 3.69583 3.74914 3.93280 4.00847 4.11353 4.14109 4.28053 4.28967 4.29946 4.31496 4.35202 4.39684 4.48919 4.51404 4.52364 4.53954 4.58808 4.66522 4.72584 4.80185 4.82638 4.87342 5.03348 5.09976 5.15808 5.36191 5.39196 5.44824 5.50447 5.66464 5.95852 6.06061 6.25756 6.36300 6.73865 6.99004 7.43236 7.78434 8.68819 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011504 B = 0.004108 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.427024 B = 6814.357691 C = 7955.262976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.062 3.938 4 C 0.090 3.910 5 N -0.468 5.468 6 C -0.319 4.319 7 H 0.078 0.922 8 C 0.030 3.970 9 N -0.899 5.899 10 Si 0.924 3.076 11 H -0.257 1.257 12 H -0.283 1.283 13 H -0.274 1.274 14 C 0.479 3.521 15 O -0.617 6.617 16 C -0.086 4.086 17 C -0.064 4.064 18 C -0.031 4.031 19 C -0.137 4.137 20 C -0.071 4.071 21 C -0.133 4.133 22 C -0.061 4.061 23 C -0.150 4.150 24 C 0.493 3.507 25 O -0.520 6.520 26 O -0.356 6.356 27 C 0.031 3.969 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.277 0.723 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.143 0.857 41 H 0.165 0.835 42 H 0.167 0.833 43 H 0.153 0.847 44 H 0.140 0.860 45 H 0.060 0.940 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 4.694 -14.251 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.016 4.016 4 C -0.033 4.033 5 N -0.188 5.188 6 C -0.447 4.447 7 H 0.096 0.904 8 C -0.173 4.173 9 N -0.536 5.536 10 Si 0.751 3.249 11 H -0.183 1.183 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.270 3.730 15 O -0.504 6.504 16 C -0.126 4.126 17 C -0.102 4.102 18 C -0.031 4.031 19 C -0.155 4.155 20 C -0.089 4.089 21 C -0.151 4.151 22 C -0.079 4.079 23 C -0.151 4.151 24 C 0.340 3.660 25 O -0.411 6.411 26 O -0.273 6.273 27 C -0.062 4.062 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.160 0.840 41 H 0.182 0.818 42 H 0.185 0.815 43 H 0.170 0.830 44 H 0.158 0.842 45 H 0.079 0.921 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.321 5.075 -13.774 14.862 hybrid contribution 0.365 0.413 1.455 1.556 sum 2.686 5.488 -12.319 13.751 Atomic orbital electron populations 1.22882 0.80308 1.03262 1.00504 1.88130 1.20806 1.27543 1.95373 1.22770 0.93025 0.85092 1.00697 1.21873 0.94546 0.98177 0.88663 1.43761 1.58853 1.07967 1.08234 1.18775 1.40321 0.81394 1.04172 0.90443 1.25735 0.96500 0.96060 0.99015 1.69799 1.42887 1.10590 1.30365 0.86220 0.79080 0.79366 0.80276 1.18279 1.20990 1.19897 1.20878 0.79168 0.86159 0.86790 1.90474 1.57240 1.16038 1.86659 1.21051 1.01800 0.98141 0.91624 1.20459 1.01933 0.97363 0.90425 1.20076 0.92038 0.95304 0.95678 1.21302 0.99840 1.00357 0.94015 1.21853 0.97158 0.93681 0.96184 1.21569 0.92575 1.00625 1.00313 1.21682 1.01890 0.93386 0.90904 1.19085 0.91195 1.08578 0.96242 1.21753 0.82778 0.75322 0.86186 1.90910 1.80765 1.41391 1.28030 1.86489 1.16758 1.76693 1.47317 1.23515 0.92521 1.00596 0.89577 0.92530 0.93932 0.89273 0.90419 0.93740 0.91446 0.89820 0.91367 0.90355 0.91040 0.90361 0.91062 0.83951 0.81773 0.81532 0.82966 0.84160 0.92100 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -17.49 10.43 -148.98 -1.55 -19.04 16 3 C 0.06 2.52 6.24 71.98 0.45 2.97 16 4 C 0.09 4.26 4.28 86.38 0.37 4.63 16 5 N -0.47 -24.48 2.17 -635.54 -1.38 -25.86 16 6 C -0.32 -18.04 8.93 84.04 0.75 -17.29 16 7 H 0.08 4.67 7.19 -2.91 -0.02 4.65 16 8 C 0.03 1.70 5.33 84.93 0.45 2.16 16 9 N -0.90 -52.74 13.96 21.66 0.30 -52.44 16 10 Si 0.92 45.08 24.81 68.60 1.70 46.78 16 11 H -0.26 -11.68 6.65 99.48 0.66 -11.02 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.27 -13.78 7.11 99.48 0.71 -13.07 16 14 C 0.48 24.42 7.58 87.66 0.66 25.09 16 15 O -0.62 -32.69 15.67 -3.05 -0.05 -32.74 16 16 C -0.09 -3.88 3.92 29.85 0.12 -3.76 16 17 C -0.06 -2.48 3.90 29.85 0.12 -2.36 16 18 C -0.03 -0.95 5.17 -19.60 -0.10 -1.05 16 19 C -0.14 -3.26 9.66 22.23 0.21 -3.04 16 20 C -0.07 -1.21 10.04 22.33 0.22 -0.98 16 21 C -0.13 -2.16 10.03 22.23 0.22 -1.93 16 22 C -0.06 -1.31 9.62 22.54 0.22 -1.09 16 23 C -0.15 -4.48 5.87 -20.10 -0.12 -4.60 16 24 C 0.49 16.85 7.75 70.33 0.54 17.39 16 25 O -0.52 -21.85 11.51 19.93 0.23 -21.62 16 26 O -0.36 -9.98 9.82 -56.17 -0.55 -10.53 16 27 C 0.03 0.72 10.57 113.37 1.20 1.91 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.07 3.27 3.18 -2.39 -0.01 3.26 16 34 H 0.08 3.81 7.63 -2.39 -0.02 3.79 16 35 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 36 H 0.08 3.40 7.66 -2.39 -0.02 3.38 16 37 H 0.07 3.47 6.68 -2.39 -0.02 3.46 16 38 H 0.08 3.41 5.79 -2.39 -0.01 3.40 16 39 H 0.07 2.62 7.98 -2.39 -0.02 2.60 16 40 H 0.14 2.98 8.05 -2.91 -0.02 2.96 16 41 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.17 1.44 8.06 -2.92 -0.02 1.42 16 43 H 0.15 2.67 7.61 -2.91 -0.02 2.64 16 44 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 46 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -76.49 380.42 6.21 -70.27 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.94 Total: 25.04 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 6.57 Total: 20.13 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -1.08 Total: -78.29 kcal Atomic # 8 Polarization: -82.01 SS G_CDS: -1.92 Total: -83.93 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.70 Total: 46.78 kcal Total: -76.49 6.21 -70.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457198541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.098 kcal (2) G-P(sol) polarization free energy of solvation -76.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds