Wall clock time and date at job start Tue Mar 31 2020 19:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00043 * 2 1 4 4 C 1.53000 * 109.47094 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47153 * 65.00208 * 4 3 2 6 6 C 1.37104 * 119.99477 * 269.99493 * 5 4 3 7 7 H 1.08006 * 119.99452 * 140.77231 * 6 5 4 8 8 C 1.38944 * 120.00403 * 320.77698 * 6 5 4 9 9 N 1.31409 * 119.99850 * 342.85765 * 8 6 5 10 10 Si 1.86795 * 120.00251 * 162.86199 * 8 6 5 11 11 H 1.48497 * 109.46930 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47392 * 119.99455 * 10 8 6 13 13 H 1.48499 * 109.46974 * 239.99801 * 10 8 6 14 14 C 1.34774 * 120.00230 * 90.00258 * 5 4 3 15 15 O 1.21293 * 119.99950 * 5.49853 * 14 5 4 16 16 C 1.50697 * 119.99847 * 185.50185 * 14 5 4 17 17 C 1.53002 * 109.47116 * 174.34777 * 16 14 5 18 18 H 1.09003 * 110.85467 * 51.27495 * 17 16 14 19 19 C 1.54706 * 110.93917 * 287.54981 * 17 16 14 20 20 O 1.43766 * 102.78680 * 267.14109 * 19 17 16 21 21 C 1.36147 * 109.23544 * 332.19455 * 20 19 17 22 22 C 1.39186 * 129.84450 * 199.18676 * 21 20 19 23 23 C 1.38420 * 120.20133 * 180.77702 * 22 21 20 24 24 O 1.35895 * 119.88559 * 179.73116 * 23 22 21 25 25 C 1.42901 * 116.99716 * 179.72774 * 24 23 22 26 26 C 1.38792 * 120.22498 * 359.46477 * 23 22 21 27 27 C 1.38245 * 119.71645 * 0.09818 * 26 23 22 28 28 C 1.37788 * 120.04794 * 359.97438 * 27 26 23 29 29 H 1.09008 * 109.47216 * 60.00091 * 1 2 3 30 30 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47483 * 300.00447 * 1 2 3 32 32 H 1.08994 * 109.47070 * 60.00036 * 3 2 1 33 33 H 1.09004 * 109.46767 * 299.99980 * 3 2 1 34 34 H 1.08997 * 109.47366 * 304.99715 * 4 3 2 35 35 H 1.09005 * 109.46865 * 184.99883 * 4 3 2 36 36 H 0.97003 * 120.00364 * 185.02126 * 9 8 6 37 37 H 1.09005 * 109.47171 * 54.34986 * 16 14 5 38 38 H 1.08996 * 109.47172 * 294.34940 * 16 14 5 39 39 H 1.08996 * 110.74757 * 148.81568 * 19 17 16 40 40 H 1.09001 * 110.74573 * 25.46543 * 19 17 16 41 41 H 1.08004 * 119.90160 * 0.50461 * 22 21 20 42 42 H 1.08989 * 109.47299 * 300.00067 * 25 24 23 43 43 H 1.09000 * 109.46763 * 60.00616 * 25 24 23 44 44 H 1.09006 * 109.46829 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.13715 * 180.12726 * 26 23 22 46 46 H 1.08006 * 119.97735 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0980 -0.7991 -1.3345 7 1 3.7982 -1.3137 -2.2356 8 6 4.6064 -1.5186 -0.2600 9 7 5.2755 -0.9003 0.6870 10 14 4.3390 -3.3647 -0.1618 11 1 3.5603 -3.8156 -1.3431 12 1 5.6536 -4.0550 -0.1422 13 1 3.5899 -3.6910 1.0782 14 6 4.2634 1.3329 -2.3200 15 8 4.2529 2.5415 -2.2181 16 6 4.5969 0.6910 -3.6420 17 6 4.7415 1.7743 -4.7128 18 1 5.4247 2.5571 -4.3831 19 6 3.3629 2.3664 -5.0900 20 8 2.9674 1.5614 -6.2135 21 6 4.0799 1.1064 -6.8531 22 6 4.2261 0.6132 -8.1464 23 6 5.4644 0.1846 -8.5923 24 8 5.5987 -0.3010 -9.8544 25 6 6.9055 -0.7205 -10.2525 26 6 6.5704 0.2542 -7.7567 27 6 6.4304 0.7520 -6.4746 28 6 5.1973 1.1772 -6.0304 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6886 1.8463 0.8899 33 1 1.6885 1.8463 -0.8900 34 1 3.8507 0.5685 0.8427 35 1 3.9784 2.1766 0.0902 36 1 5.6926 -1.4108 1.3986 37 1 3.7983 0.0051 -3.9247 38 1 5.5337 0.1410 -3.5528 39 1 3.4583 3.4129 -5.3792 40 1 2.6566 2.2548 -4.2673 41 1 3.3699 0.5606 -8.8025 42 1 7.5930 0.1228 -10.1884 43 1 7.2472 -1.5188 -9.5936 44 1 6.8730 -1.0851 -11.2792 45 1 7.5364 -0.0787 -8.1068 46 1 7.2882 0.8077 -5.8207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457203770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:09 Heat of formation + Delta-G solvation = -112.104611 kcal Electronic energy + Delta-G solvation = -29533.345948 eV Core-core repulsion = 25389.738242 eV Total energy + Delta-G solvation = -4143.607706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.14677 -39.48336 -38.57693 -36.97032 -36.18181 -34.75970 -33.19834 -31.55270 -30.52249 -29.56417 -28.89653 -27.29382 -26.56903 -25.73288 -24.60438 -23.21718 -22.15977 -21.59751 -20.47856 -19.03119 -18.14685 -17.07704 -16.68530 -16.36555 -16.02920 -15.95062 -15.68481 -15.44669 -15.31103 -15.03115 -14.43123 -14.37884 -14.19062 -14.02064 -13.68150 -13.45275 -13.15313 -12.82122 -12.57721 -12.23196 -12.03760 -11.97875 -11.89196 -11.57072 -11.36342 -11.31734 -11.14202 -11.03701 -10.97430 -10.70308 -10.57230 -10.42551 -10.29978 -10.21835 -10.00923 -9.14279 -8.97296 -8.54158 -8.43152 -7.84056 -7.44731 -6.29633 -4.00399 1.41644 1.43677 2.90620 3.17149 3.28290 3.32276 3.68553 3.86191 3.86827 4.18142 4.50664 4.60506 4.77018 4.88576 4.89637 4.97889 4.98491 5.09928 5.17581 5.24126 5.28678 5.36079 5.66222 5.67464 5.72591 5.76394 5.90293 5.95212 5.99153 6.00220 6.05776 6.08646 6.19395 6.31059 6.35531 6.41170 6.45326 6.48760 6.62215 6.66838 6.77143 7.18109 7.30630 7.39667 7.54585 7.84233 8.04149 8.40569 9.13969 9.51596 9.93339 10.73620 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012980 B = 0.003335 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.661286 B = 8393.001298 C = 9307.347123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.055 3.945 4 C 0.109 3.891 5 N -0.428 5.428 6 C -0.322 4.322 7 H 0.086 0.914 8 C 0.051 3.949 9 N -0.869 5.869 10 Si 0.917 3.083 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.280 1.280 14 C 0.469 3.531 15 O -0.613 6.613 16 C -0.105 4.105 17 C -0.055 4.055 18 H 0.103 0.897 19 C 0.064 3.936 20 O -0.304 6.304 21 C 0.150 3.850 22 C -0.179 4.179 23 C 0.155 3.845 24 O -0.317 6.317 25 C 0.029 3.971 26 C -0.239 4.239 27 C -0.027 4.027 28 C -0.194 4.194 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.268 0.732 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.133 0.867 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.130 0.870 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 1.400 -12.740 12.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.015 4.015 5 N -0.145 5.145 6 C -0.450 4.450 7 H 0.104 0.896 8 C -0.154 4.154 9 N -0.507 5.507 10 Si 0.744 3.256 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.206 1.206 14 C 0.259 3.741 15 O -0.500 6.500 16 C -0.145 4.145 17 C -0.074 4.074 18 H 0.121 0.879 19 C -0.011 4.011 20 O -0.217 6.217 21 C 0.103 3.897 22 C -0.198 4.198 23 C 0.110 3.890 24 O -0.231 6.231 25 C -0.066 4.066 26 C -0.258 4.258 27 C -0.046 4.046 28 C -0.195 4.195 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.116 0.884 45 H 0.148 0.852 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.084 1.703 -12.629 12.743 hybrid contribution -0.010 -0.848 0.423 0.947 sum -0.094 0.855 -12.206 12.236 Atomic orbital electron populations 1.22649 0.83543 1.01744 0.98772 1.88164 1.17238 1.27603 1.94990 1.23028 0.96603 0.84353 0.98340 1.21525 0.89102 0.99241 0.91645 1.43302 1.55804 1.06316 1.09050 1.19333 1.42325 0.80691 1.02663 0.89628 1.25272 0.94363 0.99873 0.95898 1.69773 1.30741 1.36259 1.13892 0.86036 0.77900 0.82997 0.78657 1.19287 1.21077 1.20560 1.20356 0.80200 0.86722 0.86840 1.90507 1.58882 1.14616 1.86030 1.21321 1.03997 0.97258 0.91947 1.21107 0.96585 0.98204 0.91459 0.87916 1.23909 0.96764 0.93850 0.86545 1.86821 1.28182 1.64538 1.42207 1.19134 0.86115 0.93117 0.91291 1.19085 0.96680 1.10274 0.93797 1.18353 0.93224 0.93627 0.83819 1.86025 1.32089 1.77345 1.27636 1.23048 0.82960 0.99542 1.01070 1.21031 0.98234 1.10713 0.95797 1.20085 0.96004 0.94048 0.94424 1.20827 0.94338 1.07932 0.96378 0.95019 0.90445 0.95212 0.94349 0.94530 0.86563 0.91007 0.92154 0.89999 0.88963 0.90584 0.87189 0.84951 0.92600 0.92479 0.88386 0.85207 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.69 10.18 -35.23 -0.36 -8.05 16 3 C 0.05 1.12 6.28 37.16 0.23 1.35 16 4 C 0.11 2.56 5.47 -4.04 -0.02 2.54 16 5 N -0.43 -10.53 2.49 -114.81 -0.29 -10.82 16 6 C -0.32 -8.15 8.17 -14.93 -0.12 -8.27 16 7 H 0.09 2.13 6.97 -52.48 -0.37 1.77 16 8 C 0.05 1.29 5.05 -17.47 -0.09 1.21 16 9 N -0.87 -22.95 11.31 55.50 0.63 -22.32 16 10 Si 0.92 20.17 29.59 -169.99 -5.03 15.14 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 C 0.47 10.89 7.10 -10.99 -0.08 10.82 16 15 O -0.61 -14.91 14.88 5.55 0.08 -14.83 16 16 C -0.11 -2.08 3.92 -27.88 -0.11 -2.19 16 17 C -0.05 -0.94 2.67 -90.40 -0.24 -1.18 16 18 H 0.10 1.80 7.78 -51.93 -0.40 1.40 16 19 C 0.06 1.05 7.12 38.06 0.27 1.32 16 20 O -0.30 -5.19 11.10 -20.21 -0.22 -5.41 16 21 C 0.15 2.43 7.03 -38.97 -0.27 2.15 16 22 C -0.18 -2.63 10.00 -39.16 -0.39 -3.02 16 23 C 0.15 2.08 6.67 -39.31 -0.26 1.82 16 24 O -0.32 -3.79 10.49 -19.41 -0.20 -4.00 16 25 C 0.03 0.22 9.81 101.05 0.99 1.21 16 26 C -0.24 -2.98 9.04 -39.37 -0.36 -3.33 16 27 C -0.03 -0.38 10.03 -39.74 -0.40 -0.78 16 28 C -0.19 -3.07 5.63 -104.05 -0.59 -3.66 16 29 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.12 2.98 5.47 -51.93 -0.28 2.69 16 35 H 0.07 1.69 7.35 -51.93 -0.38 1.31 16 36 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 37 H 0.08 1.64 7.53 -51.93 -0.39 1.25 16 38 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.11 1.92 7.31 -51.93 -0.38 1.54 16 41 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.06 0.37 7.66 -51.94 -0.40 -0.03 16 43 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.13 1.26 6.29 -52.49 -0.33 0.93 16 46 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -30.08 379.95 -6.68 -36.76 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.69 Total: 6.22 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -0.32 Total: 1.57 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.34 Total: -33.14 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.70 Total: -32.28 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.08 -6.68 -36.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457203770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.340 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds