Wall clock time and date at job start Tue Mar 31 2020 19:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00043 * 2 1 4 4 C 1.53000 * 109.47094 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47153 * 65.00208 * 4 3 2 6 6 C 1.37104 * 119.99477 * 269.99493 * 5 4 3 7 7 H 1.08006 * 119.99452 * 140.77231 * 6 5 4 8 8 C 1.38944 * 120.00403 * 320.77698 * 6 5 4 9 9 N 1.31409 * 119.99850 * 342.85765 * 8 6 5 10 10 Si 1.86795 * 120.00251 * 162.86199 * 8 6 5 11 11 H 1.48497 * 109.46930 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47392 * 119.99455 * 10 8 6 13 13 H 1.48499 * 109.46974 * 239.99801 * 10 8 6 14 14 C 1.34774 * 120.00230 * 90.00258 * 5 4 3 15 15 O 1.21293 * 119.99950 * 5.49853 * 14 5 4 16 16 C 1.50697 * 119.99847 * 185.50185 * 14 5 4 17 17 C 1.53002 * 109.47116 * 174.34777 * 16 14 5 18 18 H 1.09003 * 110.85467 * 51.27495 * 17 16 14 19 19 C 1.54706 * 110.93917 * 287.54981 * 17 16 14 20 20 O 1.43766 * 102.78680 * 267.14109 * 19 17 16 21 21 C 1.36147 * 109.23544 * 332.19455 * 20 19 17 22 22 C 1.39186 * 129.84450 * 199.18676 * 21 20 19 23 23 C 1.38420 * 120.20133 * 180.77702 * 22 21 20 24 24 O 1.35895 * 119.88559 * 179.73116 * 23 22 21 25 25 C 1.42901 * 116.99716 * 179.72774 * 24 23 22 26 26 C 1.38792 * 120.22498 * 359.46477 * 23 22 21 27 27 C 1.38245 * 119.71645 * 0.09818 * 26 23 22 28 28 C 1.37788 * 120.04794 * 359.97438 * 27 26 23 29 29 H 1.09008 * 109.47216 * 60.00091 * 1 2 3 30 30 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47483 * 300.00447 * 1 2 3 32 32 H 1.08994 * 109.47070 * 60.00036 * 3 2 1 33 33 H 1.09004 * 109.46767 * 299.99980 * 3 2 1 34 34 H 1.08997 * 109.47366 * 304.99715 * 4 3 2 35 35 H 1.09005 * 109.46865 * 184.99883 * 4 3 2 36 36 H 0.97003 * 120.00364 * 185.02126 * 9 8 6 37 37 H 1.09005 * 109.47171 * 54.34986 * 16 14 5 38 38 H 1.08996 * 109.47172 * 294.34940 * 16 14 5 39 39 H 1.08996 * 110.74757 * 148.81568 * 19 17 16 40 40 H 1.09001 * 110.74573 * 25.46543 * 19 17 16 41 41 H 1.08004 * 119.90160 * 0.50461 * 22 21 20 42 42 H 1.08989 * 109.47299 * 300.00067 * 25 24 23 43 43 H 1.09000 * 109.46763 * 60.00616 * 25 24 23 44 44 H 1.09006 * 109.46829 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.13715 * 180.12726 * 26 23 22 46 46 H 1.08006 * 119.97735 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0980 -0.7991 -1.3345 7 1 3.7982 -1.3137 -2.2356 8 6 4.6064 -1.5186 -0.2600 9 7 5.2755 -0.9003 0.6870 10 14 4.3390 -3.3647 -0.1618 11 1 3.5603 -3.8156 -1.3431 12 1 5.6536 -4.0550 -0.1422 13 1 3.5899 -3.6910 1.0782 14 6 4.2634 1.3329 -2.3200 15 8 4.2529 2.5415 -2.2181 16 6 4.5969 0.6910 -3.6420 17 6 4.7415 1.7743 -4.7128 18 1 5.4247 2.5571 -4.3831 19 6 3.3629 2.3664 -5.0900 20 8 2.9674 1.5614 -6.2135 21 6 4.0799 1.1064 -6.8531 22 6 4.2261 0.6132 -8.1464 23 6 5.4644 0.1846 -8.5923 24 8 5.5987 -0.3010 -9.8544 25 6 6.9055 -0.7205 -10.2525 26 6 6.5704 0.2542 -7.7567 27 6 6.4304 0.7520 -6.4746 28 6 5.1973 1.1772 -6.0304 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6886 1.8463 0.8899 33 1 1.6885 1.8463 -0.8900 34 1 3.8507 0.5685 0.8427 35 1 3.9784 2.1766 0.0902 36 1 5.6926 -1.4108 1.3986 37 1 3.7983 0.0051 -3.9247 38 1 5.5337 0.1410 -3.5528 39 1 3.4583 3.4129 -5.3792 40 1 2.6566 2.2548 -4.2673 41 1 3.3699 0.5606 -8.8025 42 1 7.5930 0.1228 -10.1884 43 1 7.2472 -1.5188 -9.5936 44 1 6.8730 -1.0851 -11.2792 45 1 7.5364 -0.0787 -8.1068 46 1 7.2882 0.8077 -5.8207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457203770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:08 Heat of formation + Delta-G solvation = -130.086267 kcal Electronic energy + Delta-G solvation = -29534.125691 eV Core-core repulsion = 25389.738242 eV Total energy + Delta-G solvation = -4144.387449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.36326 -40.62581 -40.20524 -38.55753 -37.24306 -36.60263 -34.61659 -33.47942 -31.70016 -31.08861 -30.05333 -28.37572 -27.71212 -27.25297 -26.41459 -24.44388 -23.65673 -22.75629 -21.86740 -20.87034 -19.20837 -18.65876 -18.11916 -17.77704 -17.39640 -17.18058 -17.05474 -16.86086 -16.55864 -16.25089 -16.11268 -15.98280 -15.67934 -15.38121 -15.22728 -14.62699 -14.44690 -14.06821 -13.75360 -13.61367 -13.43035 -13.37718 -13.25194 -13.05274 -12.89650 -12.76978 -12.60363 -12.49801 -12.36065 -12.31150 -12.03174 -11.92428 -11.77627 -11.68778 -11.35645 -11.01297 -10.52474 -10.32139 -9.59183 -9.37109 -8.97400 -8.22328 -5.98336 0.31338 0.33660 1.41678 1.49542 1.59777 1.91962 2.02934 2.35929 2.59974 2.77741 2.94270 3.03668 3.20925 3.51019 3.60892 3.87222 3.97290 4.05599 4.13798 4.25879 4.29121 4.40524 4.46512 4.47683 4.48796 4.52271 4.54412 4.58445 4.62049 4.63729 4.70220 4.77613 4.80749 4.86305 4.88689 4.99009 5.09776 5.15617 5.32113 5.38746 5.39729 5.49513 5.58508 6.05805 6.07917 6.41974 6.43534 6.46289 7.19915 7.63148 8.03958 8.81278 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012980 B = 0.003335 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.661286 B = 8393.001298 C = 9307.347123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.065 3.935 4 C 0.107 3.893 5 N -0.441 5.441 6 C -0.330 4.330 7 H 0.085 0.915 8 C 0.013 3.987 9 N -0.898 5.898 10 Si 0.976 3.024 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.282 1.282 14 C 0.462 3.538 15 O -0.628 6.628 16 C -0.092 4.092 17 C -0.049 4.049 18 H 0.097 0.903 19 C 0.067 3.933 20 O -0.317 6.317 21 C 0.129 3.871 22 C -0.190 4.190 23 C 0.158 3.842 24 O -0.329 6.329 25 C 0.017 3.983 26 C -0.228 4.228 27 C -0.030 4.030 28 C -0.210 4.210 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.270 0.730 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.138 0.862 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.121 0.879 45 H 0.163 0.837 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.637 0.328 -14.322 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C -0.012 4.012 4 C -0.017 4.017 5 N -0.158 5.158 6 C -0.458 4.458 7 H 0.103 0.897 8 C -0.189 4.189 9 N -0.536 5.536 10 Si 0.801 3.199 11 H -0.188 1.188 12 H -0.204 1.204 13 H -0.208 1.208 14 C 0.253 3.747 15 O -0.516 6.516 16 C -0.132 4.132 17 C -0.067 4.067 18 H 0.115 0.885 19 C -0.008 4.008 20 O -0.232 6.232 21 C 0.084 3.916 22 C -0.210 4.210 23 C 0.112 3.888 24 O -0.243 6.243 25 C -0.077 4.077 26 C -0.247 4.247 27 C -0.048 4.048 28 C -0.211 4.211 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.156 0.844 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.139 0.861 45 H 0.181 0.819 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.388 0.630 -14.230 14.249 hybrid contribution -0.123 -0.515 0.816 0.973 sum 0.265 0.114 -13.414 13.417 Atomic orbital electron populations 1.22881 0.80831 1.03240 1.00228 1.88090 1.20261 1.27809 1.95277 1.22822 0.94460 0.84604 0.99339 1.21461 0.91442 0.98014 0.90807 1.43515 1.56267 1.06438 1.09627 1.19475 1.42329 0.81115 1.02876 0.89725 1.25962 0.93969 1.03506 0.95477 1.69876 1.31608 1.37662 1.14474 0.85143 0.77883 0.78515 0.78407 1.18770 1.20408 1.20820 1.20925 0.79494 0.86653 0.87666 1.90479 1.59387 1.15293 1.86480 1.21203 1.03365 0.97735 0.90901 1.20956 0.97039 0.97244 0.91506 0.88511 1.23841 0.95904 0.94750 0.86278 1.86780 1.29000 1.64994 1.42380 1.19320 0.85894 0.94324 0.92077 1.19276 0.97798 1.10478 0.93411 1.18456 0.92915 0.92764 0.84629 1.86028 1.34738 1.76953 1.26581 1.23419 0.81341 1.00395 1.02564 1.21363 0.99374 1.09131 0.94809 1.20370 0.95696 0.93421 0.95326 1.20776 0.95303 1.09546 0.95489 0.94193 0.89014 0.93026 0.91686 0.94962 0.88631 0.92002 0.92060 0.90606 0.89170 0.88873 0.88710 0.84432 0.91233 0.91541 0.86058 0.81937 0.83725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.64 10.18 -148.98 -1.52 -18.16 16 3 C 0.07 2.68 6.28 71.98 0.45 3.13 16 4 C 0.11 5.15 5.47 86.38 0.47 5.62 16 5 N -0.44 -22.22 2.49 -635.53 -1.58 -23.80 16 6 C -0.33 -16.91 8.17 84.04 0.69 -16.22 16 7 H 0.09 4.26 6.97 -2.91 -0.02 4.24 16 8 C 0.01 0.67 5.05 84.93 0.43 1.10 16 9 N -0.90 -48.08 11.31 21.66 0.25 -47.84 16 10 Si 0.98 41.21 29.59 68.60 2.03 43.24 16 11 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 14 C 0.46 21.98 7.10 87.66 0.62 22.60 16 15 O -0.63 -31.28 14.88 -3.07 -0.05 -31.33 16 16 C -0.09 -3.71 3.92 29.85 0.12 -3.60 16 17 C -0.05 -1.69 2.67 -10.65 -0.03 -1.72 16 18 H 0.10 3.44 7.78 -2.39 -0.02 3.42 16 19 C 0.07 2.24 7.12 72.56 0.52 2.75 16 20 O -0.32 -10.99 11.10 -95.23 -1.06 -12.04 16 21 C 0.13 4.18 7.03 22.67 0.16 4.33 16 22 C -0.19 -5.44 10.00 22.54 0.23 -5.21 16 23 C 0.16 3.92 6.67 22.45 0.15 4.07 16 24 O -0.33 -7.02 10.49 -92.37 -0.97 -7.99 16 25 C 0.02 0.20 9.81 113.37 1.11 1.31 16 26 C -0.23 -5.05 9.04 22.40 0.20 -4.85 16 27 C -0.03 -0.78 10.03 22.16 0.22 -0.56 16 28 C -0.21 -6.57 5.63 -19.49 -0.11 -6.68 16 29 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 5.04 5.47 -2.39 -0.01 5.03 16 35 H 0.06 3.02 7.35 -2.38 -0.02 3.00 16 36 H 0.27 13.66 8.32 -92.71 -0.77 12.89 16 37 H 0.08 3.12 7.53 -2.38 -0.02 3.10 16 38 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 39 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.09 3.43 7.31 -2.39 -0.02 3.41 16 41 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 42 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 43 H 0.07 0.68 7.65 -2.39 -0.02 0.66 16 44 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.16 2.46 6.29 -2.91 -0.02 2.44 16 46 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -65.17 379.95 4.57 -60.60 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.99 Total: 29.23 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 6.48 Total: 8.09 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -1.34 Total: -71.64 kcal Atomic # 8 Polarization: -65.93 SS G_CDS: -3.59 Total: -69.52 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -65.17 4.57 -60.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457203770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.485 kcal (2) G-P(sol) polarization free energy of solvation -65.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds