Wall clock time and date at job start Tue Mar 31 2020 19:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00354 * 2 1 4 4 C 1.52994 * 109.47343 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46851 * 65.00305 * 4 3 2 6 6 C 1.37093 * 120.00003 * 264.54831 * 5 4 3 7 7 H 1.08003 * 119.99985 * 145.65360 * 6 5 4 8 8 C 1.38955 * 120.00099 * 325.65192 * 6 5 4 9 9 N 1.31410 * 119.99529 * 338.16215 * 8 6 5 10 10 Si 1.86801 * 120.00155 * 158.15858 * 8 6 5 11 11 H 1.48497 * 109.46918 * 60.00156 * 10 8 6 12 12 H 1.48499 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47077 * 300.00648 * 10 8 6 14 14 C 1.34783 * 120.00031 * 84.55162 * 5 4 3 15 15 O 1.21294 * 119.99759 * 359.97438 * 14 5 4 16 16 C 1.50695 * 119.99778 * 179.97438 * 14 5 4 17 17 C 1.53002 * 109.46729 * 179.97438 * 16 14 5 18 18 H 1.08997 * 110.83397 * 302.73398 * 17 16 14 19 19 C 1.54702 * 110.94069 * 66.45752 * 17 16 14 20 20 O 1.43757 * 102.80687 * 92.77210 * 19 17 16 21 21 C 1.36136 * 109.28627 * 27.57126 * 20 19 17 22 22 C 1.39197 * 129.82484 * 161.41076 * 21 20 19 23 23 C 1.38418 * 120.20132 * 179.57496 * 22 21 20 24 24 O 1.35898 * 119.88392 * 180.02562 * 23 22 21 25 25 C 1.42899 * 117.00064 * 179.97438 * 24 23 22 26 26 C 1.38794 * 120.23483 * 0.04138 * 23 22 21 27 27 C 1.38251 * 119.70670 * 0.17818 * 26 23 22 28 28 C 1.37789 * 120.04995 * 359.96885 * 27 26 23 29 29 H 1.09000 * 109.46997 * 299.99885 * 1 2 3 30 30 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47326 * 59.99427 * 1 2 3 32 32 H 1.09005 * 109.46769 * 300.00720 * 3 2 1 33 33 H 1.09005 * 109.46707 * 59.99617 * 3 2 1 34 34 H 1.09006 * 109.47078 * 184.99883 * 4 3 2 35 35 H 1.08993 * 109.47575 * 305.00438 * 4 3 2 36 36 H 0.97001 * 119.99359 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47445 * 299.99908 * 16 14 5 38 38 H 1.09002 * 109.47213 * 60.00135 * 16 14 5 39 39 H 1.09006 * 110.74361 * 211.09680 * 19 17 16 40 40 H 1.09001 * 110.74627 * 334.44061 * 19 17 16 41 41 H 1.07995 * 119.90045 * 359.59985 * 22 21 20 42 42 H 1.09001 * 109.47458 * 179.97438 * 25 24 23 43 43 H 1.08995 * 109.47689 * 300.00198 * 25 24 23 44 44 H 1.09007 * 109.46727 * 60.00574 * 25 24 23 45 45 H 1.07997 * 120.14389 * 180.19635 * 26 23 22 46 46 H 1.07999 * 119.97721 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2055 -0.7867 -1.3028 7 1 3.9866 -1.3372 -2.2059 8 6 4.7191 -1.4475 -0.1936 9 7 5.3770 -0.7762 0.7247 10 14 4.4742 -3.2901 -0.0078 11 1 5.0938 -3.9905 -1.1613 12 1 5.1123 -3.7496 1.2519 13 1 3.0214 -3.5946 0.0339 14 6 4.1575 1.3209 -2.3514 15 8 3.9546 2.5159 -2.3055 16 6 4.6119 0.6825 -3.6386 17 6 4.7375 1.7546 -4.7229 18 1 3.7923 2.2798 -4.8602 19 6 5.8778 2.7460 -4.3908 20 8 7.0059 2.1749 -5.0748 21 6 6.5669 1.4615 -6.1481 22 6 7.2593 1.0324 -7.2768 23 6 6.6094 0.3016 -8.2563 24 8 7.2917 -0.1145 -9.3555 25 6 6.5607 -0.8650 -10.3273 26 6 5.2632 -0.0076 -8.1200 27 6 4.5715 0.4210 -7.0023 28 6 5.2180 1.1511 -6.0288 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 1.6885 1.8464 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 3.9785 2.1765 0.0902 35 1 3.8508 0.5685 0.8426 36 1 5.7352 -1.2374 1.4992 37 1 5.5796 0.2049 -3.4856 38 1 3.8828 -0.0654 -3.9504 39 1 5.6521 3.7387 -4.7805 40 1 6.0562 2.7832 -3.3161 41 1 8.3068 1.2701 -7.3886 42 1 7.2216 -1.1336 -11.1514 43 1 6.1676 -1.7711 -9.8663 44 1 5.7350 -0.2623 -10.7059 45 1 4.7583 -0.5806 -8.8836 46 1 3.5240 0.1826 -6.8916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457203771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:13 Heat of formation + Delta-G solvation = -111.535564 kcal Electronic energy + Delta-G solvation = -29487.131020 eV Core-core repulsion = 25343.547990 eV Total energy + Delta-G solvation = -4143.583030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11034 -39.46722 -38.58620 -36.97561 -36.15036 -34.80061 -33.16207 -31.57803 -30.51082 -29.57684 -28.86382 -27.28648 -26.54019 -25.75117 -24.60990 -23.17385 -22.15225 -21.60044 -20.49243 -19.01254 -18.13509 -17.05161 -16.67256 -16.39766 -15.95951 -15.93931 -15.66629 -15.39838 -15.30578 -15.04095 -14.49431 -14.36114 -14.15595 -14.02689 -13.64669 -13.48319 -13.08746 -12.80632 -12.43048 -12.23104 -12.15714 -12.03956 -11.88552 -11.48085 -11.35507 -11.31417 -11.14791 -11.08847 -10.99746 -10.65685 -10.58308 -10.37547 -10.36689 -10.19813 -9.99103 -9.14355 -8.97283 -8.51394 -8.41665 -7.81430 -7.53181 -6.34257 -3.98032 1.44252 1.45158 2.93679 3.18672 3.26539 3.31354 3.71225 3.86859 3.91017 4.17098 4.49042 4.60022 4.77421 4.89640 4.92711 4.98586 4.99275 5.12737 5.17531 5.26138 5.29182 5.40930 5.64822 5.68323 5.70687 5.81852 5.88010 5.95373 5.98948 6.06334 6.10181 6.16523 6.22690 6.31942 6.35920 6.42542 6.44104 6.47437 6.62297 6.70497 6.76765 7.22465 7.28352 7.43343 7.48975 7.79958 7.98208 8.37917 9.11865 9.50906 9.92043 10.68576 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.003224 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.977329 B = 8683.513196 C = 9281.584678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.053 3.947 4 C 0.112 3.888 5 N -0.424 5.424 6 C -0.326 4.326 7 H 0.088 0.912 8 C 0.050 3.950 9 N -0.862 5.862 10 Si 0.913 3.087 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.464 3.536 15 O -0.615 6.615 16 C -0.105 4.105 17 C -0.052 4.052 18 H 0.096 0.904 19 C 0.064 3.936 20 O -0.303 6.303 21 C 0.153 3.847 22 C -0.180 4.180 23 C 0.156 3.844 24 O -0.317 6.317 25 C 0.029 3.971 26 C -0.241 4.241 27 C -0.028 4.028 28 C -0.197 4.197 29 H 0.030 0.970 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.269 0.731 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.133 0.867 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.129 0.871 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.826 0.604 -13.259 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.011 4.011 5 N -0.140 5.140 6 C -0.454 4.454 7 H 0.105 0.895 8 C -0.155 4.155 9 N -0.498 5.498 10 Si 0.740 3.260 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.196 1.196 14 C 0.253 3.747 15 O -0.503 6.503 16 C -0.145 4.145 17 C -0.071 4.071 18 H 0.115 0.885 19 C -0.010 4.010 20 O -0.216 6.216 21 C 0.107 3.893 22 C -0.199 4.199 23 C 0.111 3.889 24 O -0.231 6.231 25 C -0.066 4.066 26 C -0.260 4.260 27 C -0.047 4.047 28 C -0.198 4.198 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.116 0.884 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.147 0.853 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.281 1.033 -12.964 13.204 hybrid contribution -0.859 -0.975 0.208 1.316 sum -3.140 0.059 -12.756 13.137 Atomic orbital electron populations 1.22639 0.83471 1.01701 0.98809 1.88139 1.17333 1.27787 1.95033 1.23032 0.96601 0.84260 0.98606 1.21492 0.89116 0.99079 0.91450 1.43347 1.55644 1.07359 1.07675 1.19260 1.42519 0.82073 1.01565 0.89483 1.25213 0.93875 0.99896 0.96540 1.69895 1.30926 1.37264 1.11759 0.86222 0.78969 0.83138 0.77664 1.19968 1.21082 1.19622 1.20305 0.81491 0.86339 0.86540 1.90500 1.58407 1.15251 1.86166 1.21313 1.03613 0.97340 0.92240 1.21056 0.99953 0.95660 0.90404 0.88540 1.23985 0.82426 0.95660 0.98922 1.86838 1.34177 1.63909 1.36696 1.19165 0.91905 0.91107 0.87149 1.19098 1.01276 1.07353 0.92197 1.18353 0.90195 0.93722 0.86669 1.86028 1.38789 1.68881 1.29376 1.23043 0.97691 0.95086 0.90776 1.21008 0.93751 1.09467 1.01766 1.20045 0.99499 0.93851 0.91262 1.20835 0.95046 1.05728 0.98165 0.95169 0.90468 0.95028 0.94084 0.94374 0.91261 0.86584 0.92039 0.89179 0.89934 0.90789 0.86308 0.84905 0.88394 0.92513 0.92641 0.85277 0.85534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.72 10.44 -35.23 -0.37 -8.09 16 3 C 0.05 1.08 6.24 37.15 0.23 1.32 16 4 C 0.11 2.64 5.29 -4.04 -0.02 2.62 16 5 N -0.42 -10.42 2.51 -114.81 -0.29 -10.70 16 6 C -0.33 -8.24 8.48 -14.93 -0.13 -8.37 16 7 H 0.09 2.13 6.98 -52.48 -0.37 1.77 16 8 C 0.05 1.28 4.93 -17.47 -0.09 1.19 16 9 N -0.86 -22.68 11.34 55.50 0.63 -22.05 16 10 Si 0.91 20.02 29.61 -169.99 -5.03 14.98 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 14 C 0.46 10.72 7.08 -10.98 -0.08 10.65 16 15 O -0.61 -14.77 14.39 5.55 0.08 -14.69 16 16 C -0.11 -2.08 3.93 -27.88 -0.11 -2.19 16 17 C -0.05 -0.90 2.72 -90.40 -0.25 -1.14 16 18 H 0.10 1.64 8.06 -51.93 -0.42 1.22 16 19 C 0.06 1.12 6.95 38.05 0.26 1.38 16 20 O -0.30 -5.45 11.10 -20.17 -0.22 -5.67 16 21 C 0.15 2.56 7.03 -38.97 -0.27 2.29 16 22 C -0.18 -2.72 10.00 -39.16 -0.39 -3.11 16 23 C 0.16 2.13 6.67 -39.31 -0.26 1.87 16 24 O -0.32 -3.86 10.49 -19.42 -0.20 -4.06 16 25 C 0.03 0.22 9.81 101.05 0.99 1.22 16 26 C -0.24 -3.01 9.04 -39.37 -0.36 -3.36 16 27 C -0.03 -0.39 10.03 -39.74 -0.40 -0.79 16 28 C -0.20 -3.15 5.63 -104.05 -0.59 -3.73 16 29 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.63 7.59 -51.93 -0.39 1.23 16 35 H 0.12 2.95 5.37 -51.93 -0.28 2.67 16 36 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.09 1.90 8.10 -51.93 -0.42 1.48 16 38 H 0.08 1.56 7.65 -51.93 -0.40 1.17 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.12 2.28 6.65 -51.93 -0.35 1.94 16 41 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 44 H 0.05 0.37 7.66 -51.92 -0.40 -0.03 16 45 H 0.13 1.24 6.29 -52.49 -0.33 0.91 16 46 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -29.83 379.43 -6.71 -36.54 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.69 Total: 6.60 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.33 Total: 1.43 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.34 Total: -32.76 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.72 Total: -32.51 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.83 -6.71 -36.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457203771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.992 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds