Wall clock time and date at job start Tue Mar 31 2020 19:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00354 * 2 1 4 4 C 1.52994 * 109.47343 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46851 * 65.00305 * 4 3 2 6 6 C 1.37093 * 120.00003 * 264.54831 * 5 4 3 7 7 H 1.08003 * 119.99985 * 145.65360 * 6 5 4 8 8 C 1.38955 * 120.00099 * 325.65192 * 6 5 4 9 9 N 1.31410 * 119.99529 * 338.16215 * 8 6 5 10 10 Si 1.86801 * 120.00155 * 158.15858 * 8 6 5 11 11 H 1.48497 * 109.46918 * 60.00156 * 10 8 6 12 12 H 1.48499 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47077 * 300.00648 * 10 8 6 14 14 C 1.34783 * 120.00031 * 84.55162 * 5 4 3 15 15 O 1.21294 * 119.99759 * 359.97438 * 14 5 4 16 16 C 1.50695 * 119.99778 * 179.97438 * 14 5 4 17 17 C 1.53002 * 109.46729 * 179.97438 * 16 14 5 18 18 H 1.08997 * 110.83397 * 302.73398 * 17 16 14 19 19 C 1.54702 * 110.94069 * 66.45752 * 17 16 14 20 20 O 1.43757 * 102.80687 * 92.77210 * 19 17 16 21 21 C 1.36136 * 109.28627 * 27.57126 * 20 19 17 22 22 C 1.39197 * 129.82484 * 161.41076 * 21 20 19 23 23 C 1.38418 * 120.20132 * 179.57496 * 22 21 20 24 24 O 1.35898 * 119.88392 * 180.02562 * 23 22 21 25 25 C 1.42899 * 117.00064 * 179.97438 * 24 23 22 26 26 C 1.38794 * 120.23483 * 0.04138 * 23 22 21 27 27 C 1.38251 * 119.70670 * 0.17818 * 26 23 22 28 28 C 1.37789 * 120.04995 * 359.96885 * 27 26 23 29 29 H 1.09000 * 109.46997 * 299.99885 * 1 2 3 30 30 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47326 * 59.99427 * 1 2 3 32 32 H 1.09005 * 109.46769 * 300.00720 * 3 2 1 33 33 H 1.09005 * 109.46707 * 59.99617 * 3 2 1 34 34 H 1.09006 * 109.47078 * 184.99883 * 4 3 2 35 35 H 1.08993 * 109.47575 * 305.00438 * 4 3 2 36 36 H 0.97001 * 119.99359 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47445 * 299.99908 * 16 14 5 38 38 H 1.09002 * 109.47213 * 60.00135 * 16 14 5 39 39 H 1.09006 * 110.74361 * 211.09680 * 19 17 16 40 40 H 1.09001 * 110.74627 * 334.44061 * 19 17 16 41 41 H 1.07995 * 119.90045 * 359.59985 * 22 21 20 42 42 H 1.09001 * 109.47458 * 179.97438 * 25 24 23 43 43 H 1.08995 * 109.47689 * 300.00198 * 25 24 23 44 44 H 1.09007 * 109.46727 * 60.00574 * 25 24 23 45 45 H 1.07997 * 120.14389 * 180.19635 * 26 23 22 46 46 H 1.07999 * 119.97721 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2055 -0.7867 -1.3028 7 1 3.9866 -1.3372 -2.2059 8 6 4.7191 -1.4475 -0.1936 9 7 5.3770 -0.7762 0.7247 10 14 4.4742 -3.2901 -0.0078 11 1 5.0938 -3.9905 -1.1613 12 1 5.1123 -3.7496 1.2519 13 1 3.0214 -3.5946 0.0339 14 6 4.1575 1.3209 -2.3514 15 8 3.9546 2.5159 -2.3055 16 6 4.6119 0.6825 -3.6386 17 6 4.7375 1.7546 -4.7229 18 1 3.7923 2.2798 -4.8602 19 6 5.8778 2.7460 -4.3908 20 8 7.0059 2.1749 -5.0748 21 6 6.5669 1.4615 -6.1481 22 6 7.2593 1.0324 -7.2768 23 6 6.6094 0.3016 -8.2563 24 8 7.2917 -0.1145 -9.3555 25 6 6.5607 -0.8650 -10.3273 26 6 5.2632 -0.0076 -8.1200 27 6 4.5715 0.4210 -7.0023 28 6 5.2180 1.1511 -6.0288 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 1.6885 1.8464 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 3.9785 2.1765 0.0902 35 1 3.8508 0.5685 0.8426 36 1 5.7352 -1.2374 1.4992 37 1 5.5796 0.2049 -3.4856 38 1 3.8828 -0.0654 -3.9504 39 1 5.6521 3.7387 -4.7805 40 1 6.0562 2.7832 -3.3161 41 1 8.3068 1.2701 -7.3886 42 1 7.2216 -1.1336 -11.1514 43 1 6.1676 -1.7711 -9.8663 44 1 5.7350 -0.2623 -10.7059 45 1 4.7583 -0.5806 -8.8836 46 1 3.5240 0.1826 -6.8916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457203771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:12 Heat of formation + Delta-G solvation = -129.491728 kcal Electronic energy + Delta-G solvation = -29487.909658 eV Core-core repulsion = 25343.547990 eV Total energy + Delta-G solvation = -4144.361668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35812 -40.63363 -40.19851 -38.54772 -37.23669 -36.63103 -34.59768 -33.49336 -31.70541 -31.09707 -30.03269 -28.37554 -27.70574 -27.25155 -26.41202 -24.41729 -23.66890 -22.77504 -21.88341 -20.84637 -19.21951 -18.64468 -18.11005 -17.82511 -17.29379 -17.17294 -17.03536 -16.88785 -16.56122 -16.32629 -16.02035 -15.98442 -15.73845 -15.36197 -15.17664 -14.63484 -14.34697 -14.08027 -13.78596 -13.64677 -13.47999 -13.38959 -13.19988 -13.04155 -12.88420 -12.85360 -12.53687 -12.47614 -12.38033 -12.25909 -12.10154 -11.90624 -11.77514 -11.68682 -11.32838 -10.98071 -10.53557 -10.28858 -9.58462 -9.44658 -8.96503 -8.25784 -5.94690 0.32339 0.34283 1.43838 1.50638 1.57882 1.93660 2.03935 2.36117 2.60407 2.79600 2.93843 3.02966 3.19796 3.53990 3.61665 3.88246 3.98007 4.06324 4.14373 4.25849 4.29152 4.40731 4.46878 4.48021 4.52134 4.54275 4.55824 4.59935 4.63632 4.66122 4.72154 4.78274 4.81176 4.84563 4.87335 4.96207 5.12504 5.16686 5.32361 5.38842 5.41024 5.49931 5.54436 6.01237 6.08381 6.42258 6.42825 6.44859 7.18863 7.63630 8.03834 8.77323 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.003224 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.977329 B = 8683.513196 C = 9281.584678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.065 3.935 4 C 0.110 3.890 5 N -0.438 5.438 6 C -0.336 4.336 7 H 0.091 0.909 8 C 0.010 3.990 9 N -0.892 5.892 10 Si 0.973 3.027 11 H -0.266 1.266 12 H -0.285 1.285 13 H -0.270 1.270 14 C 0.456 3.544 15 O -0.627 6.627 16 C -0.093 4.093 17 C -0.044 4.044 18 H 0.100 0.900 19 C 0.066 3.934 20 O -0.322 6.322 21 C 0.128 3.872 22 C -0.194 4.194 23 C 0.158 3.842 24 O -0.331 6.331 25 C 0.017 3.983 26 C -0.229 4.229 27 C -0.027 4.027 28 C -0.211 4.211 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.270 0.730 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.135 0.865 42 H 0.120 0.880 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.165 0.835 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 -0.950 -15.491 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.012 4.012 4 C -0.014 4.014 5 N -0.155 5.155 6 C -0.464 4.464 7 H 0.109 0.891 8 C -0.192 4.192 9 N -0.530 5.530 10 Si 0.798 3.202 11 H -0.191 1.191 12 H -0.210 1.210 13 H -0.195 1.195 14 C 0.247 3.753 15 O -0.517 6.517 16 C -0.132 4.132 17 C -0.063 4.063 18 H 0.119 0.881 19 C -0.009 4.009 20 O -0.236 6.236 21 C 0.082 3.918 22 C -0.213 4.213 23 C 0.113 3.887 24 O -0.244 6.244 25 C -0.077 4.077 26 C -0.247 4.247 27 C -0.045 4.045 28 C -0.212 4.212 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.152 0.848 42 H 0.139 0.861 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.183 0.817 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.865 -0.524 -15.221 15.713 hybrid contribution -0.361 -0.494 0.777 0.989 sum -4.226 -1.018 -14.444 15.084 Atomic orbital electron populations 1.22879 0.80692 1.03255 1.00279 1.88069 1.20416 1.27860 1.95309 1.22798 0.94425 0.84548 0.99443 1.21430 0.91465 0.97808 0.90691 1.43561 1.56175 1.07510 1.08232 1.19489 1.42468 0.82507 1.01946 0.89096 1.25955 0.93476 1.03615 0.96200 1.69997 1.31975 1.38760 1.12308 0.85297 0.78678 0.78537 0.77704 1.19056 1.21044 1.19528 1.20873 0.80824 0.86312 0.87303 1.90474 1.58773 1.15835 1.86570 1.21200 1.02515 0.98081 0.91443 1.20914 0.99993 0.94901 0.90480 0.88145 1.23878 0.82633 0.96772 0.97575 1.86785 1.34551 1.64636 1.37669 1.19391 0.92737 0.92195 0.87494 1.19278 1.01624 1.08002 0.92420 1.18456 0.90686 0.92866 0.86729 1.86030 1.39867 1.69160 1.29381 1.23424 0.98699 0.95198 0.90396 1.21379 0.93163 1.08366 1.01809 1.20382 1.00667 0.92709 0.90746 1.20786 0.94837 1.07318 0.98219 0.93072 0.88946 0.94094 0.94754 0.91788 0.92428 0.88544 0.92076 0.90974 0.88898 0.89023 0.88951 0.84756 0.86138 0.91481 0.91130 0.81742 0.83174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -16.51 10.44 -148.98 -1.56 -18.06 16 3 C 0.07 2.68 6.24 71.98 0.45 3.13 16 4 C 0.11 5.31 5.29 86.38 0.46 5.77 16 5 N -0.44 -22.01 2.51 -635.53 -1.60 -23.61 16 6 C -0.34 -17.18 8.48 84.04 0.71 -16.47 16 7 H 0.09 4.46 6.98 -2.91 -0.02 4.44 16 8 C 0.01 0.52 4.93 84.93 0.42 0.94 16 9 N -0.89 -48.08 11.34 21.66 0.25 -47.84 16 10 Si 0.97 40.96 29.61 68.60 2.03 42.99 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 12 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 13 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 14 C 0.46 21.62 7.08 87.65 0.62 22.25 16 15 O -0.63 -30.91 14.39 -3.07 -0.04 -30.95 16 16 C -0.09 -3.72 3.93 29.85 0.12 -3.61 16 17 C -0.04 -1.53 2.72 -10.65 -0.03 -1.56 16 18 H 0.10 3.37 8.06 -2.39 -0.02 3.35 16 19 C 0.07 2.37 6.95 72.56 0.50 2.87 16 20 O -0.32 -12.04 11.10 -95.10 -1.06 -13.10 16 21 C 0.13 4.30 7.03 22.67 0.16 4.46 16 22 C -0.19 -5.79 10.00 22.54 0.23 -5.56 16 23 C 0.16 4.00 6.67 22.45 0.15 4.15 16 24 O -0.33 -7.21 10.49 -92.40 -0.97 -8.17 16 25 C 0.02 0.20 9.81 113.37 1.11 1.31 16 26 C -0.23 -4.95 9.04 22.41 0.20 -4.75 16 27 C -0.03 -0.67 10.03 22.17 0.22 -0.45 16 28 C -0.21 -6.58 5.63 -19.49 -0.11 -6.69 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.06 2.82 7.59 -2.38 -0.02 2.80 16 35 H 0.10 5.06 5.37 -2.39 -0.01 5.05 16 36 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 37 H 0.07 3.15 8.10 -2.39 -0.02 3.14 16 38 H 0.09 3.49 7.65 -2.39 -0.02 3.47 16 39 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 40 H 0.09 3.78 6.65 -2.39 -0.02 3.76 16 41 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 42 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.67 7.65 -2.39 -0.02 0.65 16 44 H 0.07 0.64 7.66 -2.38 -0.02 0.62 16 45 H 0.17 2.35 6.29 -2.91 -0.02 2.33 16 46 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -65.67 379.43 4.51 -61.16 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.99 Total: 29.82 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.46 Total: 7.76 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -1.35 Total: -71.45 kcal Atomic # 8 Polarization: -66.66 SS G_CDS: -3.62 Total: -70.29 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -65.67 4.51 -61.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457203771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.330 kcal (2) G-P(sol) polarization free energy of solvation -65.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds