Wall clock time and date at job start Tue Mar 31 2020 19:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 113.99985 * 2 1 4 4 C 1.52994 * 109.47188 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47498 * 64.99689 * 4 3 2 6 6 C 1.36907 * 119.99976 * 270.00238 * 5 4 3 7 7 H 1.07999 * 120.00438 * 132.05744 * 6 5 4 8 8 C 1.39026 * 119.99682 * 312.05944 * 6 5 4 9 9 N 1.31376 * 119.99931 * 165.55215 * 8 6 5 10 10 Si 1.86798 * 120.00207 * 345.55148 * 8 6 5 11 11 H 1.48497 * 109.47238 * 90.95016 * 10 8 6 12 12 H 1.48504 * 109.47110 * 210.95073 * 10 8 6 13 13 H 1.48501 * 109.46994 * 330.94892 * 10 8 6 14 14 C 1.34774 * 120.00499 * 89.99907 * 5 4 3 15 15 O 1.21625 * 119.99483 * 0.29698 * 14 5 4 16 16 C 1.47489 * 120.00463 * 180.29783 * 14 5 4 17 17 C 1.39803 * 120.09112 * 327.77327 * 16 14 5 18 18 C 1.37682 * 119.90229 * 179.79297 * 17 16 14 19 19 C 1.39006 * 120.09690 * 0.46369 * 18 17 16 20 20 O 1.35714 * 119.90716 * 179.76541 * 19 18 17 21 21 C 1.42907 * 117.00291 * 180.59310 * 20 19 18 22 22 H 1.09000 * 110.75059 * 37.08153 * 21 20 19 23 23 C 1.55300 * 110.85170 * 160.77937 * 21 20 19 24 24 C 1.54946 * 100.94315 * 152.32244 * 23 21 20 25 25 O 1.43646 * 105.13661 * 323.55872 * 24 23 21 26 26 C 1.43235 * 109.97241 * 24.42058 * 25 24 23 27 27 C 1.39011 * 120.18810 * 359.79305 * 19 18 17 28 28 C 1.37687 * 120.09351 * 359.97086 * 27 19 18 29 29 H 1.09002 * 109.47713 * 300.00133 * 1 2 3 30 30 H 1.08997 * 109.47563 * 60.00753 * 1 2 3 31 31 H 1.09001 * 109.47019 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46491 * 299.99356 * 3 2 1 33 33 H 1.08993 * 109.47321 * 59.99593 * 3 2 1 34 34 H 1.08999 * 109.47384 * 184.99514 * 4 3 2 35 35 H 1.09004 * 109.47086 * 304.99228 * 4 3 2 36 36 H 0.97000 * 120.00164 * 180.02562 * 9 8 6 37 37 H 1.08000 * 120.04574 * 0.02562 * 17 16 14 38 38 H 1.08000 * 119.95487 * 180.23573 * 18 17 16 39 39 H 1.09006 * 111.12380 * 270.24264 * 23 21 20 40 40 H 1.09000 * 111.12394 * 34.40411 * 23 21 20 41 41 H 1.08999 * 110.31118 * 204.63932 * 24 23 21 42 42 H 1.09002 * 110.38875 * 82.51419 * 24 23 21 43 43 H 1.08993 * 109.83570 * 238.77413 * 26 25 24 44 44 H 1.09004 * 109.82621 * 117.80639 * 26 25 24 45 45 H 1.08001 * 119.95558 * 179.97438 * 27 19 18 46 46 H 1.08000 * 120.04350 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0967 -0.7967 -1.3367 7 1 3.6694 -1.3261 -2.1755 8 6 4.7696 -1.4974 -0.3422 9 7 4.6490 -2.8031 -0.2623 10 14 5.8454 -0.5823 0.8803 11 1 5.0361 -0.2061 2.0672 12 1 6.9680 -1.4574 1.3039 13 1 6.3874 0.6440 0.2418 14 6 4.2615 1.3336 -2.3218 15 8 4.1591 2.5431 -2.2455 16 6 4.6984 0.7087 -3.5843 17 6 5.4448 -0.4732 -3.5598 18 6 5.8470 -1.0555 -4.7408 19 6 5.5203 -0.4649 -5.9560 20 8 5.9229 -1.0396 -7.1177 21 6 5.5640 -0.3732 -8.3298 22 1 5.6155 0.7085 -8.2056 23 6 6.4635 -0.8423 -9.5057 24 6 5.5139 -0.6190 -10.7096 25 8 4.2054 -0.9575 -10.2230 26 6 4.1585 -0.8061 -8.7995 27 6 4.7829 0.7132 -5.9847 28 6 4.3725 1.2996 -4.8086 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8463 -0.8901 33 1 1.6885 1.8464 0.8899 34 1 3.9784 2.1766 0.0888 35 1 3.8514 0.5684 0.8410 36 1 5.1182 -3.2920 0.4318 37 1 5.7022 -0.9307 -2.6160 38 1 6.4204 -1.9706 -4.7230 39 1 7.3561 -0.2222 -9.5891 40 1 6.7269 -1.8950 -9.4031 41 1 5.7910 -1.2730 -11.5364 42 1 5.5416 0.4234 -11.0269 43 1 3.8894 -1.7548 -8.3353 44 1 3.4280 -0.0423 -8.5328 45 1 4.5315 1.1691 -6.9310 46 1 3.7993 2.2147 -4.8318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457209777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:09 Heat of formation + Delta-G solvation = -110.444637 kcal Electronic energy + Delta-G solvation = -29442.572583 eV Core-core repulsion = 25299.036859 eV Total energy + Delta-G solvation = -4143.535724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.49745 -39.42613 -38.49512 -37.19409 -36.32684 -34.91758 -32.06313 -31.92042 -30.71980 -30.21570 -29.05235 -28.57580 -25.86513 -24.98075 -23.49856 -23.03423 -22.68437 -21.65917 -20.97433 -19.24580 -18.31940 -17.58331 -16.97061 -16.51728 -16.30008 -15.83338 -15.47972 -15.33559 -14.99803 -14.73152 -14.60541 -14.39624 -14.15300 -13.90544 -13.66289 -13.48318 -13.18346 -12.87216 -12.79466 -12.56648 -12.51621 -12.11156 -11.83345 -11.79286 -11.73447 -11.51776 -11.34331 -11.15122 -10.90999 -10.86066 -10.62068 -10.37206 -10.07913 -10.01819 -9.82353 -9.23083 -9.09512 -8.66207 -8.49511 -7.79558 -7.69805 -6.43286 -4.11104 1.60228 1.89228 3.03705 3.05641 3.20339 3.26980 3.62455 3.68030 4.07320 4.12084 4.25064 4.39910 4.50519 4.56413 4.60480 4.78300 4.90962 4.99624 5.16550 5.23929 5.35674 5.39278 5.44499 5.57454 5.62386 5.64555 5.66677 5.73876 5.83338 5.88547 5.91658 5.92226 5.97979 6.04034 6.21545 6.27325 6.44826 6.53768 6.63444 6.66187 6.83882 7.13707 7.29134 7.38166 7.64986 7.78292 8.07736 8.28291 8.93752 9.28212 9.62150 10.65272 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015383 B = 0.003115 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.803258 B = 8986.289968 C = 9582.475687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.056 3.944 4 C 0.098 3.902 5 N -0.452 5.452 6 C -0.327 4.327 7 H 0.104 0.896 8 C 0.072 3.928 9 N -0.856 5.856 10 Si 0.868 3.132 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.260 1.260 14 C 0.527 3.473 15 O -0.599 6.599 16 C -0.134 4.134 17 C -0.018 4.018 18 C -0.167 4.167 19 C 0.129 3.871 20 O -0.300 6.300 21 C 0.051 3.949 22 H 0.092 0.908 23 C -0.150 4.150 24 C 0.052 3.948 25 O -0.379 6.379 26 C 0.028 3.972 27 C -0.232 4.232 28 C -0.039 4.039 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.275 0.725 37 H 0.171 0.829 38 H 0.129 0.871 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.122 0.878 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 3.843 -11.670 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C -0.022 4.022 4 C -0.025 4.025 5 N -0.172 5.172 6 C -0.454 4.454 7 H 0.121 0.879 8 C -0.136 4.136 9 N -0.491 5.491 10 Si 0.695 3.305 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.184 1.184 14 C 0.318 3.682 15 O -0.485 6.485 16 C -0.137 4.137 17 C -0.036 4.036 18 C -0.185 4.185 19 C 0.084 3.916 20 O -0.214 6.214 21 C -0.006 4.006 22 H 0.110 0.890 23 C -0.188 4.188 24 C -0.024 4.024 25 O -0.298 6.298 26 C -0.048 4.048 27 C -0.250 4.250 28 C -0.059 4.059 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.188 0.812 38 H 0.147 0.853 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.140 0.860 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.735 3.812 -11.647 12.277 hybrid contribution 0.181 0.703 0.889 1.148 sum 0.916 4.515 -10.758 11.702 Atomic orbital electron populations 1.22655 0.83032 1.02097 0.98724 1.88211 1.17665 1.26638 1.95008 1.22848 0.94947 0.85189 0.99211 1.21789 0.92236 0.99074 0.89387 1.43476 1.57500 1.07079 1.09109 1.18944 1.35414 0.79213 1.11859 0.87862 1.25370 0.96180 0.95120 0.96952 1.69687 1.39668 1.06716 1.33014 0.87030 0.80801 0.80698 0.81952 1.19815 1.21200 1.18416 1.18307 0.79284 0.85806 0.84838 1.90626 1.58499 1.14300 1.85065 1.19811 1.03212 0.97445 0.93270 1.22231 0.90601 0.91509 0.99223 1.20477 1.06207 1.02605 0.89244 1.19241 0.94719 0.92219 0.85430 1.86082 1.73565 1.49793 1.11936 1.23928 0.94503 0.97988 0.84189 0.89018 1.23309 0.98753 1.04281 0.92457 1.23353 0.81886 1.00775 0.96436 1.88441 1.31239 1.89704 1.20419 1.23720 0.96838 1.02771 0.81520 1.20940 1.06982 0.98275 0.98819 1.20909 0.96250 0.98083 0.90623 0.95192 0.94930 0.90085 0.93452 0.93918 0.89794 0.90494 0.91469 0.81154 0.85300 0.88912 0.88832 0.89064 0.91742 0.89717 0.90472 0.86037 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.51 10.18 -35.23 -0.36 -7.87 16 3 C 0.06 1.09 6.28 37.15 0.23 1.32 16 4 C 0.10 2.13 4.58 -4.05 -0.02 2.12 16 5 N -0.45 -10.71 1.98 -116.01 -0.23 -10.94 16 6 C -0.33 -8.18 5.85 -14.99 -0.09 -8.27 16 7 H 0.10 2.81 7.14 -52.49 -0.37 2.43 16 8 C 0.07 1.82 4.99 -17.45 -0.09 1.73 16 9 N -0.86 -22.82 13.95 55.50 0.77 -22.04 16 10 Si 0.87 19.78 25.18 -169.99 -4.28 15.50 16 11 H -0.27 -6.04 6.65 56.52 0.38 -5.67 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 14 C 0.53 12.38 7.39 -12.49 -0.09 12.29 16 15 O -0.60 -14.85 16.33 5.26 0.09 -14.76 16 16 C -0.13 -2.83 5.51 -104.96 -0.58 -3.41 16 17 C -0.02 -0.36 7.97 -39.20 -0.31 -0.67 16 18 C -0.17 -2.98 9.97 -39.50 -0.39 -3.37 16 19 C 0.13 2.10 6.65 -39.01 -0.26 1.84 16 20 O -0.30 -4.32 9.87 -18.85 -0.19 -4.51 16 21 C 0.05 0.57 2.81 -24.79 -0.07 0.50 16 22 H 0.09 0.94 6.26 -51.93 -0.33 0.61 16 23 C -0.15 -1.30 6.89 -24.48 -0.17 -1.47 16 24 C 0.05 0.43 7.78 38.18 0.30 0.72 16 25 O -0.38 -4.43 11.36 -35.23 -0.40 -4.83 16 26 C 0.03 0.33 7.26 37.88 0.28 0.60 16 27 C -0.23 -3.63 8.87 -39.50 -0.35 -3.98 16 28 C -0.04 -0.72 9.59 -39.20 -0.38 -1.09 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.74 7.42 -51.93 -0.39 1.35 16 35 H 0.08 1.72 3.99 -51.93 -0.21 1.51 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.17 3.78 5.30 -52.49 -0.28 3.50 16 38 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 44 H 0.08 0.84 7.84 -51.93 -0.41 0.43 16 45 H 0.12 1.54 5.58 -52.49 -0.29 1.25 16 46 H 0.13 2.17 7.95 -52.49 -0.42 1.76 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -30.13 372.28 -6.35 -36.49 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.49 Total: 6.89 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.88 Total: 0.47 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.55 Total: -32.99 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.86 Total: -31.96 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.28 Total: 15.50 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.13 -6.35 -36.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457209777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.959 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds