Wall clock time and date at job start Tue Mar 31 2020 19:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00084 * 2 1 4 4 C 1.53000 * 109.47270 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46764 * 63.63830 * 4 3 2 6 6 C 1.36939 * 119.99940 * 266.80079 * 5 4 3 7 7 H 1.07995 * 120.00058 * 143.24048 * 6 5 4 8 8 C 1.38814 * 120.00130 * 323.23672 * 6 5 4 9 9 N 1.31615 * 120.00200 * 160.07000 * 8 6 5 10 10 Si 1.86806 * 119.99895 * 340.06968 * 8 6 5 11 11 H 1.48496 * 109.47008 * 95.25395 * 10 8 6 12 12 H 1.48500 * 109.47173 * 215.25664 * 10 8 6 13 13 H 1.48500 * 109.46956 * 335.25450 * 10 8 6 14 14 C 1.46497 * 120.00105 * 86.80607 * 5 4 3 15 15 C 1.52999 * 109.47179 * 89.99358 * 14 5 4 16 16 C 1.50706 * 109.46791 * 179.97438 * 15 14 5 17 17 O 1.21290 * 120.00277 * 0.02562 * 16 15 14 18 18 C 1.46860 * 119.99662 * 180.02562 * 16 15 14 19 19 C 1.40008 * 120.12729 * 359.72572 * 18 16 15 20 20 C 1.37610 * 119.93994 * 179.75777 * 19 18 16 21 21 C 1.39106 * 120.30085 * 0.58734 * 20 19 18 22 22 C 1.39348 * 120.08991 * 359.61439 * 21 20 19 23 23 C 1.38180 * 119.98795 * 0.11332 * 22 21 20 24 24 O 1.36157 * 120.75499 * 180.26900 * 22 21 20 25 25 C 1.43167 * 116.70231 * 342.86074 * 24 22 21 26 26 C 1.53465 * 108.23694 * 46.14072 * 25 24 22 27 27 O 1.35924 * 119.21004 * 179.51819 * 21 20 19 28 28 H 1.08996 * 109.47073 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47268 * 300.00702 * 1 2 3 30 30 H 1.08999 * 109.47014 * 60.00509 * 1 2 3 31 31 H 1.09000 * 109.47072 * 59.99637 * 3 2 1 32 32 H 1.09001 * 109.46488 * 299.99886 * 3 2 1 33 33 H 1.09002 * 109.46800 * 303.64160 * 4 3 2 34 34 H 1.08996 * 109.47379 * 183.63984 * 4 3 2 35 35 H 0.96998 * 119.99950 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46747 * 329.99356 * 14 5 4 37 37 H 1.09001 * 109.47075 * 210.00000 * 14 5 4 38 38 H 1.08992 * 109.47541 * 299.99724 * 15 14 5 39 39 H 1.09001 * 109.47283 * 60.00326 * 15 14 5 40 40 H 1.07997 * 120.03308 * 0.02892 * 19 18 16 41 41 H 1.08000 * 119.84745 * 180.29825 * 20 19 18 42 42 H 1.07995 * 120.03672 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.70671 * 165.82003 * 25 24 22 44 44 H 1.09002 * 109.71022 * 286.45517 * 25 24 22 45 45 H 1.09000 * 109.70925 * 59.84337 * 26 25 24 46 46 H 1.08991 * 109.71261 * 180.47081 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9743 0.5345 -1.2367 6 6 4.1584 -0.8221 -1.2692 7 1 3.8981 -1.3812 -2.1557 8 6 4.6797 -1.4785 -0.1628 9 7 4.5015 -2.7750 -0.0224 10 14 5.6341 -0.5218 1.1270 11 1 4.7220 -0.1380 2.2342 12 1 6.7312 -1.3687 1.6603 13 1 6.2079 0.7018 0.5116 14 6 4.2163 1.3356 -2.4391 15 6 5.6765 1.7917 -2.4627 16 6 5.9255 2.6153 -3.7001 17 8 5.0237 2.8179 -4.4854 18 6 7.2602 3.1725 -3.9548 19 6 8.3017 2.9452 -3.0472 20 6 9.5520 3.4650 -3.2922 21 6 9.7842 4.2267 -4.4328 22 6 8.7516 4.4608 -5.3387 23 6 7.4945 3.9380 -5.1032 24 8 8.9652 5.1999 -6.4622 25 6 10.1402 6.0177 -6.4805 26 6 11.3202 5.1744 -5.9789 27 8 11.0253 4.7376 -4.6479 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8524 0.5886 0.8565 34 1 3.9787 2.1784 0.0659 35 1 4.8661 -3.2337 0.7506 36 1 3.5631 2.2082 -2.4318 37 1 4.0091 0.7341 -3.3242 38 1 5.8837 2.3933 -1.5778 39 1 6.3297 0.9191 -2.4700 40 1 8.1250 2.3587 -2.1577 41 1 10.3555 3.2846 -2.5935 42 1 6.6935 4.1193 -5.8046 43 1 10.3365 6.3563 -7.4978 44 1 9.9993 6.8783 -5.8266 45 1 11.4559 4.3093 -6.6280 46 1 12.2279 5.7777 -5.9752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459540609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:00 Heat of formation + Delta-G solvation = -92.588489 kcal Electronic energy + Delta-G solvation = -28743.332561 eV Core-core repulsion = 24600.571138 eV Total energy + Delta-G solvation = -4142.761423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.54711 -39.51532 -37.59008 -37.46495 -37.21665 -35.57499 -32.16635 -31.61121 -30.93315 -30.75817 -29.12451 -28.09401 -25.66555 -25.52361 -24.68935 -23.05982 -22.47842 -21.94974 -20.29277 -19.37154 -18.83324 -17.52654 -17.38279 -16.75832 -16.07847 -15.84220 -15.64264 -15.49407 -15.26698 -14.92868 -14.84626 -14.71277 -14.59475 -14.09742 -14.07555 -13.98971 -13.51688 -13.24539 -12.98095 -12.74557 -12.52499 -12.22976 -12.05619 -11.77596 -11.45993 -11.40907 -11.33823 -11.27066 -10.95230 -10.78321 -10.68267 -10.49371 -10.04251 -9.69815 -9.54661 -9.38416 -8.89984 -8.86346 -8.41314 -8.34240 -6.79904 -5.83684 -3.25869 0.55723 1.11464 2.41511 2.72266 2.85398 3.36698 3.47351 3.52368 3.63110 3.81537 4.22217 4.28855 4.40192 4.48946 4.58907 4.62422 4.78764 4.94041 4.99386 5.03162 5.12039 5.16508 5.42284 5.51990 5.62889 5.71120 5.77036 5.80433 5.83166 5.88038 5.97876 6.00083 6.06523 6.15096 6.17346 6.21798 6.29938 6.32347 6.38859 6.56652 6.66063 6.69275 6.94298 7.08524 7.78236 7.98799 8.18713 8.51826 9.07138 9.83987 10.20165 11.32682 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018270 B = 0.002641 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.215016 B =10598.561262 C =11531.209952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.349 6.349 3 C 0.046 3.954 4 C 0.132 3.868 5 N -0.597 5.597 6 C -0.250 4.250 7 H 0.078 0.922 8 C 0.039 3.961 9 N -0.902 5.902 10 Si 0.877 3.123 11 H -0.288 1.288 12 H -0.305 1.305 13 H -0.270 1.270 14 C 0.163 3.837 15 C -0.188 4.188 16 C 0.402 3.598 17 O -0.456 6.456 18 C -0.161 4.161 19 C -0.062 4.062 20 C -0.127 4.127 21 C 0.075 3.925 22 C 0.032 3.968 23 C -0.057 4.057 24 O -0.306 6.306 25 C 0.020 3.980 26 C 0.019 3.981 27 O -0.305 6.305 28 H 0.078 0.922 29 H 0.026 0.974 30 H 0.030 0.970 31 H 0.028 0.972 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.260 0.740 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.122 0.878 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.734 18.197 -8.395 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C -0.034 4.034 4 C 0.006 3.994 5 N -0.318 5.318 6 C -0.379 4.379 7 H 0.095 0.905 8 C -0.161 4.161 9 N -0.544 5.544 10 Si 0.708 3.292 11 H -0.216 1.216 12 H -0.233 1.233 13 H -0.195 1.195 14 C 0.036 3.964 15 C -0.228 4.228 16 C 0.279 3.721 17 O -0.332 6.332 18 C -0.162 4.162 19 C -0.080 4.080 20 C -0.146 4.146 21 C 0.030 3.970 22 C -0.013 4.013 23 C -0.075 4.075 24 O -0.221 6.221 25 C -0.056 4.056 26 C -0.056 4.056 27 O -0.219 6.219 28 H 0.097 0.903 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.124 0.876 40 H 0.165 0.835 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.140 0.860 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.437 17.992 -8.761 22.570 hybrid contribution 0.678 0.873 0.793 1.360 sum 11.114 18.865 -7.968 23.300 Atomic orbital electron populations 1.22648 0.83751 1.01879 0.98333 1.88282 1.16967 1.26579 1.94816 1.23250 0.97408 0.85050 0.97683 1.21340 0.90417 0.96302 0.91372 1.44076 1.76293 1.04631 1.06827 1.18681 1.36278 0.80314 1.02619 0.90490 1.25353 0.98121 0.94871 0.97767 1.69847 1.46208 1.08713 1.29615 0.86948 0.80100 0.80014 0.82137 1.21629 1.23302 1.19462 1.20695 0.90403 0.94397 0.90881 1.22813 1.04420 1.00332 0.95206 1.22674 0.85516 0.77007 0.86858 1.90493 1.45387 1.51201 1.46084 1.20533 0.97002 1.02591 0.96092 1.21364 0.90885 0.96950 0.98836 1.20427 0.98476 0.98657 0.97015 1.19228 0.83645 0.97457 0.96684 1.18732 0.93809 0.99181 0.89529 1.20669 0.94017 0.95902 0.96951 1.86354 1.43840 1.56676 1.35226 1.23629 0.84327 0.92918 1.04680 1.23672 0.99185 0.99850 0.82926 1.86273 1.28803 1.76652 1.30196 0.90315 0.95571 0.95165 0.95354 0.94408 0.91857 0.92882 0.93008 0.93831 0.92190 0.89266 0.87636 0.83500 0.84132 0.83717 0.85977 0.90449 0.90229 0.85937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.65 16 2 O -0.35 -7.87 10.27 -35.23 -0.36 -8.23 16 3 C 0.05 0.90 6.29 37.16 0.23 1.13 16 4 C 0.13 2.82 4.78 -4.04 -0.02 2.80 16 5 N -0.60 -13.88 2.06 -173.24 -0.36 -14.24 16 6 C -0.25 -6.93 9.57 -15.06 -0.14 -7.07 16 7 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 8 C 0.04 1.11 5.33 -17.43 -0.09 1.01 16 9 N -0.90 -27.80 13.97 55.49 0.78 -27.02 16 10 Si 0.88 21.73 24.83 -169.99 -4.22 17.51 16 11 H -0.29 -7.11 6.69 56.52 0.38 -6.73 16 12 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.16 3.24 4.97 -4.04 -0.02 3.22 16 15 C -0.19 -3.17 4.63 -27.88 -0.13 -3.30 16 16 C 0.40 6.39 7.11 -30.82 -0.22 6.17 16 17 O -0.46 -8.30 15.97 5.55 0.09 -8.21 16 18 C -0.16 -2.23 5.87 -105.09 -0.62 -2.85 16 19 C -0.06 -0.76 9.46 -39.15 -0.37 -1.13 16 20 C -0.13 -1.45 9.94 -39.49 -0.39 -1.84 16 21 C 0.08 0.90 6.51 -38.85 -0.25 0.64 16 22 C 0.03 0.40 6.48 -39.19 -0.25 0.15 16 23 C -0.06 -0.77 9.50 -38.95 -0.37 -1.14 16 24 O -0.31 -3.43 10.41 -32.97 -0.34 -3.77 16 25 C 0.02 0.14 7.26 37.40 0.27 0.41 16 26 C 0.02 0.13 7.25 37.40 0.27 0.40 16 27 O -0.31 -3.17 10.40 -32.24 -0.34 -3.50 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.51 3.13 -51.93 -0.16 1.35 16 34 H 0.05 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.04 0.81 8.03 -51.93 -0.42 0.40 16 37 H 0.06 1.27 8.00 -51.93 -0.42 0.86 16 38 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 39 H 0.11 1.85 8.09 -51.93 -0.42 1.43 16 40 H 0.15 1.64 7.04 -52.49 -0.37 1.27 16 41 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.15 1.97 7.64 -52.49 -0.40 1.57 16 43 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -34.57 380.58 -6.85 -41.42 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.83 Total: 0.06 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.99 Total: 0.25 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.42 Total: -41.26 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.95 Total: -23.71 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.22 Total: 17.51 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.57 -6.85 -41.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459540609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.171 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds