Wall clock time and date at job start Tue Mar 31 2020 18:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35756 * 116.99813 * 2 1 4 4 C 1.38413 * 120.08225 * 359.97438 * 3 2 1 5 5 C 1.38626 * 120.11281 * 180.02562 * 4 3 2 6 6 O 1.35811 * 119.85400 * 179.97438 * 5 4 3 7 7 C 1.42904 * 117.00385 * 359.97438 * 6 5 4 8 8 C 1.39592 * 120.28826 * 359.97438 * 5 4 3 9 9 O 1.36063 * 119.91622 * 179.74550 * 8 5 4 10 10 C 1.42901 * 116.99867 * 180.02562 * 9 8 5 11 11 C 1.37874 * 120.16428 * 0.02562 * 8 5 4 12 12 C 1.40135 * 119.88320 * 359.97438 * 11 8 5 13 13 C 1.46721 * 120.14428 * 180.02562 * 12 11 8 14 14 C 1.35193 * 119.99330 * 45.24109 * 13 12 11 15 15 C 1.41781 * 120.00469 * 9.79277 * 14 13 12 16 16 O 1.21743 * 120.00105 * 7.04110 * 15 14 13 17 17 N 1.34777 * 120.00213 * 187.03317 * 15 14 13 18 18 C 1.46494 * 119.99902 * 0.02562 * 17 15 14 19 19 C 1.46501 * 120.00007 * 180.02562 * 17 15 14 20 20 C 1.50706 * 109.47052 * 90.00629 * 19 17 15 21 21 H 1.08005 * 119.99724 * 359.97438 * 20 19 17 22 22 C 1.37874 * 119.99952 * 180.02562 * 20 19 17 23 23 N 1.31512 * 120.00172 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99592 * 179.97438 * 22 20 19 25 25 H 1.48489 * 109.47388 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47043 * 120.00202 * 24 22 20 27 27 H 1.48498 * 109.47088 * 239.99635 * 24 22 20 28 28 H 1.09002 * 109.46692 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47012 * 300.00340 * 1 2 3 30 30 H 1.09004 * 109.46846 * 60.00853 * 1 2 3 31 31 H 1.08004 * 119.94529 * 0.02562 * 4 3 2 32 32 H 1.09001 * 109.46981 * 299.99945 * 7 6 5 33 33 H 1.09001 * 109.47392 * 59.99549 * 7 6 5 34 34 H 1.08993 * 109.47604 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.46890 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.47238 * 300.00059 * 10 9 8 37 37 H 1.09000 * 109.46844 * 59.99906 * 10 9 8 38 38 H 1.08003 * 120.05910 * 179.97438 * 11 8 5 39 39 H 1.07997 * 120.00137 * 225.24284 * 13 12 11 40 40 H 1.08009 * 119.99545 * 189.79773 * 14 13 12 41 41 H 1.08995 * 109.47925 * 89.99790 * 18 17 15 42 42 H 1.09007 * 109.47043 * 209.99978 * 18 17 15 43 43 H 1.09004 * 109.47212 * 329.99289 * 18 17 15 44 44 H 1.08999 * 109.47006 * 210.00345 * 19 17 15 45 45 H 1.09003 * 109.47379 * 330.00797 * 19 17 15 46 46 H 0.97006 * 120.00077 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2931 2.3715 -0.0005 5 6 1.9217 3.6070 -0.0011 6 8 1.1785 4.7437 -0.0021 7 6 -0.2422 4.5900 -0.0032 8 6 3.3153 3.6879 -0.0005 9 8 3.9244 4.9045 -0.0063 10 6 5.3534 4.9146 -0.0060 11 6 4.0760 2.5380 0.0000 12 6 3.4478 1.2853 0.0005 13 6 4.2517 0.0579 0.0017 14 6 5.3113 -0.0552 0.8336 15 6 5.5249 0.9146 1.8456 16 8 4.6888 1.7757 2.0498 17 7 6.6534 0.8832 2.5818 18 6 7.6597 -0.1527 2.3360 19 6 6.8737 1.8849 3.6279 20 6 6.3093 1.3822 4.9317 21 1 5.8337 0.4135 4.9765 22 6 6.3992 2.1592 6.0670 23 7 6.9780 3.3389 6.0124 24 14 5.6990 1.5363 7.6829 25 1 5.1045 0.1910 7.4790 26 1 6.7846 1.4504 8.6925 27 1 4.6507 2.4727 8.1619 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 0.2145 2.3155 -0.0005 32 1 -0.5475 4.0397 -0.8932 33 1 -0.5489 4.0404 0.8867 34 1 -0.7141 5.5725 -0.0044 35 1 5.7095 5.9447 -0.0104 36 1 5.7201 4.4077 0.8866 37 1 5.7206 4.3990 -0.8933 38 1 5.1541 2.6025 0.0000 39 1 3.9970 -0.7551 -0.6620 40 1 5.9953 -0.8843 0.7272 41 1 8.3722 0.2022 1.5914 42 1 8.1853 -0.3763 3.2644 43 1 7.1702 -1.0550 1.9693 44 1 7.9430 2.0640 3.7399 45 1 6.3765 2.8146 3.3512 46 1 7.0416 3.8854 6.8113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491422544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:41 Heat of formation + Delta-G solvation = -96.116806 kcal Electronic energy + Delta-G solvation = -30126.230381 eV Core-core repulsion = 25983.315958 eV Total energy + Delta-G solvation = -4142.914423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.90398 -40.72525 -39.97589 -39.39126 -37.33451 -36.27182 -34.78216 -34.21709 -30.94272 -30.72709 -29.64186 -29.01754 -28.12352 -27.44789 -27.03385 -25.62212 -23.87274 -22.86140 -22.03520 -20.04719 -19.34501 -18.74918 -18.59131 -18.09569 -17.98440 -17.17567 -17.11333 -16.79381 -16.47232 -16.21918 -16.11646 -16.10551 -15.65150 -15.40102 -15.23939 -14.59809 -14.36164 -14.18089 -13.83798 -13.69061 -13.50612 -13.46355 -13.30564 -13.20673 -12.99462 -12.78933 -12.56790 -12.49849 -12.47441 -12.37182 -12.24799 -12.11022 -12.00237 -11.68365 -11.35786 -10.65561 -10.45332 -10.41517 -9.40003 -9.08741 -8.38172 -8.21106 -6.36948 -0.24759 0.46416 0.86842 1.32927 1.35640 1.47419 2.23311 2.31568 2.32034 2.46132 2.58396 2.67692 2.75586 3.06509 3.71491 3.76408 3.99690 4.07323 4.17172 4.26564 4.30861 4.34444 4.35223 4.37003 4.40756 4.43420 4.47943 4.59461 4.64801 4.66856 4.72950 4.75699 4.84984 4.93593 5.00681 5.01591 5.14039 5.25058 5.32298 5.47946 5.57759 5.63876 5.91258 6.06857 6.08327 6.31456 6.64034 6.71722 6.88980 7.29697 7.60978 8.84033 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010245 B = 0.003974 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.437148 B = 7044.233558 C = 7403.267895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.320 6.320 3 C 0.148 3.852 4 C -0.274 4.274 5 C 0.136 3.864 6 O -0.327 6.327 7 C 0.015 3.985 8 C 0.021 3.979 9 O -0.331 6.331 10 C 0.030 3.970 11 C -0.048 4.048 12 C -0.119 4.119 13 C 0.008 3.992 14 C -0.229 4.229 15 C 0.518 3.482 16 O -0.577 6.577 17 N -0.609 5.609 18 C 0.078 3.922 19 C 0.264 3.736 20 C -0.538 4.538 21 H 0.049 0.951 22 C 0.008 3.992 23 N -0.928 5.928 24 Si 0.964 3.036 25 H -0.269 1.269 26 H -0.267 1.267 27 H -0.283 1.283 28 H 0.125 0.875 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.169 0.831 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.028 0.972 37 H 0.068 0.932 38 H 0.125 0.875 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.020 0.980 45 H -0.003 1.003 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.729 -6.882 -18.018 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.233 6.233 3 C 0.102 3.898 4 C -0.293 4.293 5 C 0.090 3.910 6 O -0.241 6.241 7 C -0.079 4.079 8 C -0.024 4.024 9 O -0.246 6.246 10 C -0.064 4.064 11 C -0.067 4.067 12 C -0.121 4.121 13 C -0.012 4.012 14 C -0.249 4.249 15 C 0.310 3.690 16 O -0.461 6.461 17 N -0.340 5.340 18 C -0.064 4.064 19 C 0.142 3.858 20 C -0.577 4.577 21 H 0.067 0.933 22 C -0.191 4.191 23 N -0.568 5.568 24 Si 0.789 3.211 25 H -0.193 1.193 26 H -0.191 1.191 27 H -0.209 1.209 28 H 0.143 0.857 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.187 0.813 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.143 0.857 39 H 0.188 0.812 40 H 0.186 0.814 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.038 0.962 45 H 0.016 0.984 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.009 -6.104 -17.779 21.785 hybrid contribution -0.114 0.159 1.490 1.503 sum -11.124 -5.946 -16.289 20.601 Atomic orbital electron populations 1.23396 0.76463 1.05891 1.02090 1.85993 1.23391 1.25557 1.88368 1.18664 0.90726 0.84544 0.95912 1.21076 1.01494 0.89898 1.16799 1.18257 0.87936 0.86325 0.98473 1.86108 1.20965 1.28599 1.88414 1.23410 0.76478 1.05649 1.02317 1.18242 0.89952 0.85454 1.08749 1.86038 1.22238 1.26059 1.90274 1.23104 0.77698 1.04917 1.00731 1.20751 0.98923 0.90222 0.96798 1.18106 0.90399 0.93812 1.09745 1.22436 0.89757 0.94198 0.94768 1.22359 1.02302 1.02435 0.97845 1.17951 0.81457 0.85949 0.83604 1.90857 1.44138 1.40009 1.71049 1.48208 1.19765 1.31005 1.35026 1.21943 0.91581 0.90929 1.01974 1.18656 0.95037 0.87107 0.84980 1.21725 1.37867 1.03355 0.94747 0.93289 1.25821 0.95501 0.94910 1.02834 1.70053 1.44828 1.11522 1.30389 0.85417 0.78331 0.78324 0.79041 1.19284 1.19150 1.20925 0.85674 0.92765 0.90933 0.81338 0.90716 0.92251 0.86102 0.86148 0.95328 0.91349 0.85746 0.81164 0.81433 0.91233 0.91936 0.88672 0.96229 0.98445 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.32 -8.21 9.94 -90.82 -0.90 -9.11 16 3 C 0.15 4.60 6.70 22.85 0.15 4.75 16 4 C -0.27 -8.03 8.00 22.40 0.18 -7.85 16 5 C 0.14 4.80 6.71 22.69 0.15 4.95 16 6 O -0.33 -10.53 10.26 -77.37 -0.79 -11.32 16 7 C 0.02 0.30 9.81 113.37 1.11 1.41 16 8 C 0.02 0.81 6.69 22.51 0.15 0.96 16 9 O -0.33 -13.11 10.27 -80.20 -0.82 -13.94 16 10 C 0.03 0.99 9.81 113.37 1.11 2.11 16 11 C -0.05 -1.82 5.59 22.64 0.13 -1.69 16 12 C -0.12 -4.11 4.48 -20.06 -0.09 -4.20 16 13 C 0.01 0.23 9.34 23.79 0.22 0.45 16 14 C -0.23 -7.03 9.02 22.44 0.20 -6.83 16 15 C 0.52 22.26 6.56 85.12 0.56 22.81 16 16 O -0.58 -29.93 11.54 -4.49 -0.05 -29.98 16 17 N -0.61 -26.74 2.86 -861.65 -2.46 -29.20 16 18 C 0.08 2.40 10.17 127.77 1.30 3.70 16 19 C 0.26 14.66 5.16 85.63 0.44 15.10 16 20 C -0.54 -32.13 9.39 25.60 0.24 -31.88 16 21 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 22 C 0.01 0.48 5.46 84.65 0.46 0.94 16 23 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 24 Si 0.96 46.46 29.54 68.60 2.03 48.48 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 28 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 0.86 7.66 -2.39 -0.02 0.84 16 30 H 0.07 0.85 7.66 -2.38 -0.02 0.84 16 31 H 0.17 3.57 4.48 -2.91 -0.01 3.56 16 32 H 0.07 1.08 7.65 -2.39 -0.02 1.06 16 33 H 0.06 1.07 7.65 -2.39 -0.02 1.05 16 34 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.03 1.11 7.66 -2.39 -0.02 1.09 16 37 H 0.07 1.88 7.65 -2.39 -0.02 1.86 16 38 H 0.12 4.79 5.31 -2.91 -0.02 4.78 16 39 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.17 3.66 6.03 -2.91 -0.02 3.64 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 2.04 8.07 -2.38 -0.02 2.02 16 43 H 0.09 2.24 6.00 -2.39 -0.01 2.23 16 44 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 45 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 46 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -85.34 379.78 5.71 -79.63 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 1.00 Total: 16.63 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 7.43 Total: 6.11 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -2.18 Total: -86.50 kcal Atomic # 8 Polarization: -61.78 SS G_CDS: -2.57 Total: -64.35 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -85.34 5.71 -79.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491422544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.491 kcal (2) G-P(sol) polarization free energy of solvation -85.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds