Wall clock time and date at job start Tue Mar 31 2020 19:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42908 * 113.99556 * 2 1 4 4 C 1.52998 * 109.46551 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46701 * 185.00065 * 4 3 2 6 6 C 1.52999 * 109.47490 * 305.00065 * 4 3 2 7 7 C 1.53005 * 109.46980 * 185.00310 * 6 4 3 8 8 O 1.42901 * 109.46747 * 180.02562 * 7 6 4 9 9 N 1.46498 * 109.47312 * 65.00385 * 4 3 2 10 10 C 1.34777 * 120.00309 * 84.99776 * 9 4 3 11 11 O 1.21726 * 120.00083 * 359.97438 * 10 9 4 12 12 C 1.46251 * 120.00324 * 180.02562 * 10 9 4 13 13 C 1.35025 * 120.00402 * 173.21162 * 12 10 9 14 14 C 1.46962 * 119.99514 * 348.68321 * 13 12 10 15 15 C 1.40023 * 120.10028 * 316.40227 * 14 13 12 16 16 C 1.37607 * 119.89523 * 179.69809 * 15 14 13 17 17 C 1.39177 * 120.09695 * 0.60383 * 16 15 14 18 18 O 1.35573 * 119.89411 * 179.69711 * 17 16 15 19 19 C 1.34782 * 116.99735 * 174.33497 * 18 17 16 20 20 H 1.08003 * 120.00461 * 5.05912 * 19 18 17 21 21 C 1.38720 * 119.99859 * 185.06291 * 19 18 17 22 22 N 1.31505 * 120.00130 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00049 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46962 * 89.99551 * 23 21 19 25 25 H 1.48503 * 109.46916 * 209.99585 * 23 21 19 26 26 H 1.48495 * 109.46942 * 329.99685 * 23 21 19 27 27 C 1.39168 * 120.20693 * 359.66889 * 17 16 15 28 28 C 1.37594 * 120.10237 * 0.02943 * 27 17 16 29 29 H 1.08996 * 109.47457 * 59.99923 * 1 2 3 30 30 H 1.09006 * 109.46884 * 299.99639 * 1 2 3 31 31 H 1.09001 * 109.46653 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47022 * 300.00011 * 3 2 1 33 33 H 1.09001 * 109.47058 * 60.00572 * 3 2 1 34 34 H 1.09005 * 109.46873 * 305.00073 * 6 4 3 35 35 H 1.08994 * 109.47136 * 65.00343 * 6 4 3 36 36 H 1.08997 * 109.46808 * 299.99771 * 7 6 4 37 37 H 1.08994 * 109.47159 * 60.00047 * 7 6 4 38 38 H 0.96702 * 113.99746 * 180.02562 * 8 7 6 39 39 H 0.97000 * 120.00345 * 264.99516 * 9 4 3 40 40 H 1.08005 * 120.00256 * 353.21179 * 12 10 9 41 41 H 1.08000 * 120.00356 * 168.68622 * 13 12 10 42 42 H 1.08004 * 120.05677 * 359.97438 * 15 14 13 43 43 H 1.08001 * 119.95156 * 180.27738 * 16 15 14 44 44 H 0.97001 * 120.00329 * 180.02562 * 22 21 19 45 45 H 1.07998 * 119.95186 * 180.02562 * 27 17 16 46 46 H 1.08005 * 120.05680 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1766 0.0889 6 6 3.9790 0.3194 1.1806 7 6 5.5072 0.3008 1.2535 8 8 5.9215 -0.5079 2.3565 9 7 3.9756 0.5646 -1.2528 10 6 4.1644 1.3232 -2.3506 11 8 3.9686 2.5236 -2.3020 12 6 4.6033 0.7040 -3.6008 13 6 4.6607 1.4368 -4.7335 14 6 4.0538 2.7746 -4.7746 15 6 2.7897 2.9898 -4.2121 16 6 2.2280 4.2455 -4.2475 17 6 2.9091 5.2979 -4.8522 18 8 2.3492 6.5320 -4.8902 19 6 3.1060 7.5323 -5.3834 20 1 4.0787 7.3182 -5.8012 21 6 2.6356 8.8370 -5.3544 22 7 1.4512 9.0978 -4.8461 23 14 3.6842 10.2234 -6.0387 24 1 3.3800 10.4088 -7.4804 25 1 3.3853 11.4790 -5.3042 26 1 5.1207 9.8844 -5.8755 27 6 4.1632 5.0874 -5.4176 28 6 4.7354 3.8366 -5.3815 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8464 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 3.5762 0.7328 2.1053 35 1 3.6093 -0.6969 1.0455 36 1 5.9100 -0.1126 0.3289 37 1 5.8770 1.3171 1.3886 38 1 6.8809 -0.5649 2.4639 39 1 4.1313 -0.3920 -1.2917 40 1 4.8816 -0.3394 -3.6181 41 1 5.1526 1.0397 -5.6092 42 1 2.2582 2.1725 -3.7473 43 1 1.2550 4.4135 -3.8100 44 1 1.1221 10.0101 -4.8261 45 1 4.6882 5.9071 -5.8854 46 1 5.7089 3.6742 -5.8201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492139374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:49 Heat of formation + Delta-G solvation = -134.918986 kcal Electronic energy + Delta-G solvation = -28697.410706 eV Core-core repulsion = 24552.813695 eV Total energy + Delta-G solvation = -4144.597011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.22906 -40.53276 -39.17399 -38.14909 -37.88262 -36.11042 -34.58189 -33.93444 -32.54737 -31.81591 -29.81613 -29.32085 -27.44577 -27.02696 -24.99690 -23.97828 -23.49266 -22.63488 -21.59706 -20.55620 -19.76080 -18.89046 -18.34118 -18.19625 -17.54649 -16.98790 -16.64180 -16.37847 -16.36018 -16.25087 -15.99736 -15.67561 -15.45821 -15.38227 -14.86351 -14.74663 -14.55704 -14.43162 -14.22698 -13.74223 -13.56441 -13.47799 -13.22818 -12.98286 -12.87831 -12.69335 -12.62942 -12.34171 -12.21877 -12.12288 -12.03746 -11.97171 -11.23683 -10.97517 -10.90157 -10.72721 -10.59100 -10.37396 -10.02703 -9.56735 -8.54574 -8.48354 -6.15757 0.00805 0.72101 1.13696 1.33355 1.45293 1.51895 2.16944 2.32325 2.48754 2.83056 2.87423 3.14804 3.21418 3.52754 3.87793 3.99733 4.05406 4.07305 4.14091 4.17141 4.22836 4.32493 4.35965 4.49702 4.51628 4.53429 4.55058 4.60300 4.64099 4.74933 4.77704 4.83366 4.98789 5.06317 5.10297 5.19403 5.26812 5.28557 5.46936 5.57005 5.68811 5.73253 5.85968 6.02541 6.11540 6.25624 6.73888 6.87569 6.95488 7.46693 7.77821 8.74668 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013358 B = 0.002586 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.628037 B =10825.367340 C =11134.567265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.052 3.948 4 C 0.159 3.841 5 H 0.085 0.915 6 C -0.110 4.110 7 C 0.077 3.923 8 O -0.592 6.592 9 N -0.706 5.706 10 C 0.529 3.471 11 O -0.565 6.565 12 C -0.230 4.230 13 C 0.004 3.996 14 C -0.159 4.159 15 C 0.016 3.984 16 C -0.220 4.220 17 C 0.127 3.873 18 O -0.231 6.231 19 C -0.415 4.415 20 H 0.103 0.897 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.021 2.979 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.253 1.253 27 C -0.258 4.258 28 C -0.047 4.047 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.398 0.602 39 H 0.414 0.586 40 H 0.172 0.828 41 H 0.168 0.832 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.273 0.727 45 H 0.119 0.881 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.661 -23.612 8.491 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.053 3.947 5 H 0.103 0.897 6 C -0.148 4.148 7 C -0.001 4.001 8 O -0.400 6.400 9 N -0.358 5.358 10 C 0.319 3.681 11 O -0.446 6.446 12 C -0.251 4.251 13 C -0.015 4.015 14 C -0.159 4.159 15 C -0.002 4.002 16 C -0.240 4.240 17 C 0.077 3.923 18 O -0.138 6.138 19 C -0.491 4.491 20 H 0.120 0.880 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.840 3.160 24 H -0.185 1.185 25 H -0.195 1.195 26 H -0.177 1.177 27 C -0.278 4.278 28 C -0.065 4.065 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.248 0.752 39 H 0.251 0.749 40 H 0.189 0.811 41 H 0.185 0.815 42 H 0.134 0.866 43 H 0.117 0.883 44 H 0.082 0.918 45 H 0.137 0.863 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.633 -22.757 8.738 25.544 hybrid contribution 0.188 1.152 -0.133 1.175 sum 7.821 -21.605 8.606 24.536 Atomic orbital electron populations 1.22888 0.80096 1.03837 1.00191 1.87802 1.20714 1.27154 1.95474 1.22906 0.94070 0.85173 1.00433 1.20807 0.91629 0.98047 0.84219 0.89666 1.21552 0.94853 1.01467 0.96967 1.22147 0.94826 0.93966 0.89117 1.86405 1.29833 1.72394 1.51417 1.45861 1.68580 1.11898 1.09502 1.19079 0.76795 0.86618 0.85572 1.91008 1.52076 1.16488 1.85010 1.23061 1.08903 1.01989 0.91128 1.22564 0.90760 0.89945 0.98257 1.18861 0.95844 0.95294 1.05932 1.20621 0.94139 0.93936 0.91519 1.20155 1.01880 0.93025 1.08930 1.19994 0.92779 0.86030 0.93536 1.83875 1.41629 1.14212 1.74054 1.21884 1.01701 0.85559 1.39932 0.88016 1.26665 0.98188 1.00149 0.97126 1.70173 1.19479 1.21724 1.44594 0.84561 0.77793 0.75293 0.78366 1.18488 1.19522 1.17652 1.21083 0.97239 0.99532 1.09912 1.21178 0.98961 0.90786 0.95587 0.94778 0.93352 0.87801 0.94855 0.91640 0.90030 0.89639 0.92378 0.93876 0.75241 0.74922 0.81090 0.81474 0.86609 0.88284 0.91778 0.86280 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.39 -8.02 9.87 -148.98 -1.47 -9.49 16 3 C 0.05 1.16 5.74 71.98 0.41 1.57 16 4 C 0.16 3.21 2.37 44.99 0.11 3.31 16 5 H 0.09 2.09 7.58 -2.38 -0.02 2.07 16 6 C -0.11 -1.79 4.84 30.60 0.15 -1.65 16 7 C 0.08 1.13 6.93 71.98 0.50 1.63 16 8 O -0.59 -8.89 13.66 -148.98 -2.04 -10.93 16 9 N -0.71 -13.25 4.47 -446.91 -2.00 -15.24 16 10 C 0.53 13.38 6.74 86.33 0.58 13.97 16 11 O -0.57 -20.51 11.84 -4.43 -0.05 -20.56 16 12 C -0.23 -4.38 9.90 23.61 0.23 -4.15 16 13 C 0.00 0.09 9.80 23.82 0.23 0.32 16 14 C -0.16 -5.41 4.54 -20.13 -0.09 -5.50 16 15 C 0.02 0.64 6.59 22.55 0.15 0.78 16 16 C -0.22 -10.69 9.97 22.35 0.22 -10.47 16 17 C 0.13 6.90 6.66 22.72 0.15 7.05 16 18 O -0.23 -14.79 9.74 -20.31 -0.20 -14.98 16 19 C -0.41 -25.24 9.48 67.94 0.64 -24.60 16 20 H 0.10 5.69 5.18 -2.91 -0.02 5.67 16 21 C -0.02 -1.41 5.49 84.86 0.47 -0.94 16 22 N -0.92 -58.42 13.67 21.62 0.30 -58.12 16 23 Si 1.02 44.10 29.55 68.60 2.03 46.13 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 27 C -0.26 -12.09 9.14 22.34 0.20 -11.88 16 28 C -0.05 -1.74 9.78 22.55 0.22 -1.52 16 29 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.09 1.40 7.73 -2.39 -0.02 1.38 16 36 H 0.06 0.72 7.75 -2.39 -0.02 0.71 16 37 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.40 2.46 9.12 -74.06 -0.68 1.78 16 39 H 0.41 5.36 8.58 -92.71 -0.80 4.56 16 40 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.12 4.12 7.02 -2.91 -0.02 4.10 16 43 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 44 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 45 H 0.12 5.58 5.62 -2.91 -0.02 5.57 16 46 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -84.37 389.24 1.54 -82.83 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -0.46 Total: 30.75 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 5.43 Total: -30.38 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -1.70 Total: -73.36 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -3.76 Total: -55.96 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -84.37 1.54 -82.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492139374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.090 kcal (2) G-P(sol) polarization free energy of solvation -84.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds