Wall clock time and date at job start Tue Mar 31 2020 19:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42909 * 113.99789 * 2 1 4 4 C 1.52998 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47069 * 304.99708 * 4 3 2 6 6 O 1.42896 * 109.46918 * 64.99714 * 4 3 2 7 7 C 1.52996 * 109.47065 * 184.99729 * 4 3 2 8 8 C 1.53006 * 109.47200 * 174.99819 * 7 4 3 9 9 N 1.46491 * 109.47184 * 180.02562 * 8 7 4 10 10 C 1.34783 * 120.00149 * 180.02562 * 9 8 7 11 11 O 1.21720 * 119.99754 * 359.97438 * 10 9 8 12 12 C 1.46254 * 120.00211 * 180.02562 * 10 9 8 13 13 C 1.35024 * 119.99741 * 186.98126 * 12 10 9 14 14 C 1.46955 * 120.00243 * 10.95710 * 13 12 10 15 15 C 1.40017 * 120.10355 * 226.00587 * 14 13 12 16 16 C 1.37602 * 119.89826 * 179.79356 * 15 14 13 17 17 C 1.39177 * 120.10029 * 0.48531 * 16 15 14 18 18 O 1.35574 * 119.89819 * 179.77071 * 17 16 15 19 19 C 1.34779 * 116.99846 * 174.20145 * 18 17 16 20 20 H 1.07997 * 120.00295 * 5.06535 * 19 18 17 21 21 C 1.38715 * 119.99787 * 185.06328 * 19 18 17 22 22 N 1.31511 * 119.99903 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00074 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47300 * 89.99772 * 23 21 19 25 25 H 1.48507 * 109.47126 * 209.99836 * 23 21 19 26 26 H 1.48501 * 109.47126 * 329.99314 * 23 21 19 27 27 C 1.39170 * 120.20246 * 359.74075 * 17 16 15 28 28 C 1.37600 * 120.10304 * 0.02840 * 27 17 16 29 29 H 1.09001 * 109.47572 * 300.00544 * 1 2 3 30 30 H 1.09007 * 109.47107 * 60.00223 * 1 2 3 31 31 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47047 * 59.99783 * 3 2 1 33 33 H 1.08996 * 109.46924 * 299.99816 * 3 2 1 34 34 H 0.96701 * 114.00367 * 60.00605 * 6 4 3 35 35 H 1.09000 * 109.47211 * 55.00472 * 7 4 3 36 36 H 1.08998 * 109.47513 * 294.99717 * 7 4 3 37 37 H 1.08994 * 109.46599 * 59.99769 * 8 7 4 38 38 H 1.08998 * 109.46804 * 300.00331 * 8 7 4 39 39 H 0.96999 * 120.00504 * 0.02562 * 9 8 7 40 40 H 1.07997 * 120.00125 * 7.24622 * 12 10 9 41 41 H 1.07999 * 119.99294 * 190.96368 * 13 12 10 42 42 H 1.07999 * 120.04955 * 359.97438 * 15 14 13 43 43 H 1.08001 * 119.94899 * 180.23233 * 16 15 14 44 44 H 0.97005 * 119.99758 * 180.02562 * 22 21 19 45 45 H 1.08007 * 119.95108 * 180.02562 * 27 17 16 46 46 H 1.08004 * 120.04926 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8507 0.5688 0.8427 6 8 3.9657 0.5793 -1.2201 7 6 4.1571 2.5771 0.1263 8 6 5.6765 2.4477 0.2524 9 7 6.2717 3.7808 0.3733 10 6 7.6073 3.9138 0.4964 11 8 8.3188 2.9263 0.5075 12 6 8.2016 5.2447 0.6177 13 6 9.5439 5.3889 0.5991 14 6 10.3994 4.2561 0.2188 15 6 11.5299 3.9422 0.9831 16 6 12.3256 2.8780 0.6256 17 6 12.0139 2.1204 -0.4995 18 8 12.8034 1.0756 -0.8506 19 6 12.3836 0.3093 -1.8768 20 1 11.4994 0.5866 -2.4315 21 6 13.0872 -0.8357 -2.2205 22 7 12.6773 -1.5837 -3.2215 23 14 14.6161 -1.3158 -1.2607 24 1 14.2327 -2.1922 -0.1248 25 1 15.5528 -2.0442 -2.1537 26 1 15.2785 -0.0927 -0.7406 27 6 10.8940 2.4316 -1.2649 28 6 10.0898 3.4910 -0.9124 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8465 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.7191 1.0746 -2.0132 35 1 3.7602 3.0737 1.0117 36 1 3.9148 3.1646 -0.7593 37 1 6.0734 1.9510 -0.6329 38 1 5.9188 1.8602 1.1380 39 1 5.7048 4.5677 0.3648 40 1 7.5668 6.1116 0.7264 41 1 9.9889 6.3367 0.8638 42 1 11.7752 4.5326 1.8535 43 1 13.1956 2.6328 1.2167 44 1 13.1692 -2.3846 -3.4616 45 1 10.6557 1.8407 -2.1370 46 1 9.2207 3.7315 -1.5067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492315791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:37 Heat of formation + Delta-G solvation = -107.906312 kcal Electronic energy + Delta-G solvation = -27790.917346 eV Core-core repulsion = 23647.491692 eV Total energy + Delta-G solvation = -4143.425654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.80079 -39.07005 -38.72454 -37.18469 -36.59324 -34.86215 -33.06026 -32.26378 -31.88643 -30.13327 -29.19907 -28.10484 -26.49545 -25.23487 -24.02270 -22.55212 -21.90010 -21.72262 -20.83143 -19.18577 -17.86546 -17.48125 -17.11045 -16.98368 -16.59160 -16.45873 -15.99809 -15.66515 -14.96925 -14.84410 -14.60927 -14.33421 -14.08018 -13.86490 -13.72318 -13.48974 -13.34837 -13.16271 -12.80638 -12.55463 -12.44320 -12.38743 -12.22806 -12.10762 -11.80552 -11.56070 -11.35614 -11.12998 -10.91088 -10.77194 -10.62745 -10.40557 -10.12839 -10.10940 -9.50398 -9.39218 -9.19830 -8.94271 -8.71623 -7.97405 -6.97347 -6.36805 -4.00621 1.23263 2.36089 2.61967 3.04057 3.26398 3.30787 3.44681 3.50993 3.63597 4.08167 4.28507 4.36324 4.57444 4.64760 4.68305 4.76185 4.83260 4.93225 4.93793 4.96211 5.00089 5.12498 5.17142 5.19649 5.24868 5.28328 5.52081 5.56797 5.70217 5.78012 5.83709 5.94503 6.21397 6.26923 6.38034 6.51867 6.58216 6.67511 6.69617 6.95655 7.19542 7.32619 7.39804 7.45418 7.66588 7.71450 7.89989 8.11166 8.55390 8.98246 9.62032 10.70693 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009892 B = 0.002526 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.957619 B =11081.564056 C =13502.531749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.030 3.970 4 C 0.112 3.888 5 H 0.111 0.889 6 O -0.546 6.546 7 C -0.159 4.159 8 C 0.125 3.875 9 N -0.739 5.739 10 C 0.536 3.464 11 O -0.508 6.508 12 C -0.259 4.259 13 C 0.022 3.978 14 C -0.177 4.177 15 C -0.050 4.050 16 C -0.207 4.207 17 C 0.175 3.825 18 O -0.213 6.213 19 C -0.386 4.386 20 H 0.108 0.892 21 C 0.063 3.937 22 N -0.877 5.877 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.228 4.228 28 C 0.007 3.993 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.373 0.627 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.393 0.607 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.279 0.721 45 H 0.131 0.869 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.045 13.912 7.327 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C -0.047 4.047 4 C 0.052 3.948 5 H 0.128 0.872 6 O -0.350 6.350 7 C -0.198 4.198 8 C 0.001 3.999 9 N -0.392 5.392 10 C 0.325 3.675 11 O -0.383 6.383 12 C -0.280 4.280 13 C 0.002 3.998 14 C -0.178 4.178 15 C -0.068 4.068 16 C -0.226 4.226 17 C 0.122 3.878 18 O -0.118 6.118 19 C -0.462 4.462 20 H 0.125 0.875 21 C -0.140 4.140 22 N -0.515 5.515 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.247 4.247 28 C -0.011 4.011 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.220 0.780 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.227 0.773 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.090 0.910 45 H 0.148 0.852 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.906 12.240 7.684 25.415 hybrid contribution -0.557 0.807 -0.079 0.983 sum -21.463 13.047 7.605 26.243 Atomic orbital electron populations 1.22777 0.81068 1.03007 0.99813 1.87987 1.19550 1.27036 1.95325 1.23323 0.95061 0.85523 1.00819 1.21832 0.90049 0.93554 0.89375 0.87167 1.86728 1.80706 1.52507 1.15066 1.22416 0.96253 0.97675 1.03412 1.21155 0.90777 0.84766 1.03209 1.45966 1.07673 1.08600 1.76983 1.18500 0.81547 0.90489 0.76941 1.91022 1.59700 1.39907 1.47698 1.22659 0.95962 0.95743 1.13661 1.22338 0.92731 0.96935 0.87784 1.18352 0.98509 1.00597 1.00305 1.20604 0.92828 0.95862 0.97515 1.19991 1.03752 0.99951 0.98902 1.19270 0.89099 0.87493 0.91946 1.83496 1.44126 1.35593 1.48548 1.20828 1.13530 1.04543 1.07290 0.87490 1.24490 0.98920 0.94437 0.96200 1.69633 1.39982 1.14997 1.26870 0.86180 0.81719 0.79392 0.79608 1.19836 1.20783 1.18332 1.21076 0.98327 1.01356 1.03936 1.20597 0.94623 0.91971 0.93952 0.94147 0.94106 0.89420 0.92426 0.92959 0.78010 0.90257 0.90716 0.90492 0.91507 0.77336 0.86104 0.85917 0.87022 0.86657 0.91036 0.85183 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.69 10.67 -40.09 -0.43 -4.12 16 3 C 0.03 0.21 5.57 37.16 0.21 0.42 16 4 C 0.11 0.93 3.25 -26.73 -0.09 0.85 16 5 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 6 O -0.55 -5.81 12.84 -40.09 -0.51 -6.33 16 7 C -0.16 -1.06 5.01 -26.73 -0.13 -1.19 16 8 C 0.12 1.36 5.57 -4.04 -0.02 1.34 16 9 N -0.74 -7.89 5.55 -61.76 -0.34 -8.23 16 10 C 0.54 7.90 6.86 -13.04 -0.09 7.81 16 11 O -0.51 -10.15 12.34 5.17 0.06 -10.08 16 12 C -0.26 -3.15 9.92 -37.50 -0.37 -3.52 16 13 C 0.02 0.29 9.79 -37.20 -0.36 -0.07 16 14 C -0.18 -3.20 4.43 -105.03 -0.46 -3.66 16 15 C -0.05 -0.91 9.78 -39.15 -0.38 -1.29 16 16 C -0.21 -4.40 9.97 -39.46 -0.39 -4.80 16 17 C 0.17 4.34 6.66 -38.89 -0.26 4.08 16 18 O -0.21 -5.92 8.57 0.73 0.01 -5.92 16 19 C -0.39 -11.39 9.94 30.91 0.31 -11.08 16 20 H 0.11 3.24 5.41 -52.49 -0.28 2.96 16 21 C 0.06 1.83 5.49 -17.51 -0.10 1.73 16 22 N -0.88 -26.13 13.96 55.48 0.77 -25.36 16 23 Si 0.91 22.38 28.62 -169.99 -4.86 17.52 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.23 -5.40 9.14 -39.47 -0.36 -5.76 16 28 C 0.01 0.14 6.69 -39.14 -0.26 -0.12 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.37 2.54 9.05 45.56 0.41 2.95 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 1.05 7.82 -51.93 -0.41 0.64 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.39 2.77 8.45 -40.82 -0.34 2.43 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 44 H 0.28 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.13 3.25 5.62 -52.48 -0.29 2.95 16 46 H 0.10 1.88 7.27 -52.48 -0.38 1.50 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -36.53 390.39 -7.01 -43.55 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.93 Total: 7.06 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.66 Total: -13.97 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.43 Total: -33.59 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.87 Total: -26.44 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.86 Total: 17.52 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.53 -7.01 -43.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492315791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.360 kcal (2) G-P(sol) polarization free energy of solvation -36.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds