Wall clock time and date at job start Tue Mar 31 2020 19:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00248 * 2 1 4 4 C 1.52992 * 109.47555 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47427 * 54.99713 * 4 3 2 6 6 C 1.52999 * 109.47417 * 175.00248 * 4 3 2 7 7 N 1.46498 * 109.47070 * 182.02226 * 6 4 3 8 8 C 1.34779 * 119.99951 * 175.01823 * 7 6 4 9 9 O 1.21721 * 119.99990 * 0.02562 * 8 7 6 10 10 C 1.46251 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.35023 * 120.00018 * 173.17076 * 10 8 7 12 12 C 1.46960 * 120.00189 * 347.92147 * 11 10 8 13 13 C 1.40021 * 120.09959 * 314.18448 * 12 11 10 14 14 C 1.37600 * 119.89788 * 179.69764 * 13 12 11 15 15 C 1.39181 * 120.10153 * 0.59876 * 14 13 12 16 16 O 1.35567 * 119.90153 * 179.69656 * 15 14 13 17 17 C 1.34782 * 116.99954 * 185.80604 * 16 15 14 18 18 H 1.07994 * 119.99772 * 5.36243 * 17 16 15 19 19 C 1.38720 * 119.99677 * 185.35308 * 17 16 15 20 20 N 1.31511 * 120.00325 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99726 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47234 * 60.00135 * 21 19 17 23 23 H 1.48504 * 109.47070 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46921 * 300.00216 * 21 19 17 25 25 C 1.39183 * 120.19777 * 359.67513 * 15 14 13 26 26 C 1.37596 * 120.10313 * 0.02562 * 25 15 14 27 27 O 1.42907 * 109.47040 * 295.00179 * 4 3 2 28 28 C 1.42894 * 114.00204 * 95.03752 * 27 4 3 29 29 H 1.09004 * 109.47448 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47035 * 299.99975 * 1 2 3 31 31 H 1.09001 * 109.47126 * 59.99967 * 1 2 3 32 32 H 1.09005 * 109.47024 * 59.99600 * 3 2 1 33 33 H 1.09007 * 109.46959 * 300.00391 * 3 2 1 34 34 H 1.08996 * 109.46527 * 302.01923 * 6 4 3 35 35 H 1.08999 * 109.47047 * 62.02063 * 6 4 3 36 36 H 0.96998 * 120.00444 * 355.02555 * 7 6 4 37 37 H 1.07997 * 120.00064 * 353.18470 * 10 8 7 38 38 H 1.08005 * 120.00006 * 167.91095 * 11 10 8 39 39 H 1.07999 * 120.05118 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.95250 * 180.27490 * 14 13 12 41 41 H 0.96994 * 120.00399 * 179.97438 * 20 19 17 42 42 H 1.07995 * 119.94174 * 179.97438 * 25 15 14 43 43 H 1.08004 * 120.04690 * 180.02562 * 26 25 15 44 44 H 1.09008 * 109.47356 * 294.97146 * 28 27 4 45 45 H 1.09005 * 109.47403 * 54.96996 * 28 27 4 46 46 H 1.08996 * 109.47288 * 174.97068 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5686 -0.8427 6 6 4.1572 2.5770 -0.1263 7 7 5.6165 2.4574 -0.1755 8 6 6.3755 3.5509 -0.3866 9 8 5.8486 4.6380 -0.5360 10 6 7.8323 3.4317 -0.4352 11 6 8.5857 4.4970 -0.7825 12 6 7.9507 5.6878 -1.3643 13 6 6.9968 5.5495 -2.3800 14 6 6.4003 6.6669 -2.9175 15 6 6.7527 7.9339 -2.4617 16 8 6.1669 9.0323 -2.9984 17 6 6.6360 10.2318 -2.6012 18 1 7.4988 10.2867 -1.9539 19 6 6.0108 11.3957 -3.0240 20 7 4.9601 11.3287 -3.8120 21 14 6.6615 13.0581 -2.4741 22 1 8.0645 13.2172 -2.9337 23 1 5.8234 14.1357 -3.0586 24 1 6.6134 13.1429 -0.9923 25 6 7.7045 8.0764 -1.4562 26 6 8.3018 6.9644 -0.9086 27 8 3.9658 0.5792 1.2202 28 6 4.1566 -0.8342 1.1323 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8465 0.8900 33 1 1.6885 1.8465 -0.8900 34 1 3.8007 3.0529 -1.0397 35 1 3.8710 3.1818 0.7342 36 1 6.0365 1.5912 -0.0562 37 1 8.3056 2.4915 -0.1935 38 1 9.6551 4.4742 -0.6326 39 1 6.7265 4.5670 -2.7379 40 1 5.6612 6.5610 -3.6979 41 1 4.5227 12.1425 -4.1074 42 1 7.9752 9.0615 -1.1060 43 1 9.0400 7.0761 -0.1282 44 1 3.1996 -1.3187 0.9384 45 1 4.8481 -1.0577 0.3198 46 1 4.5676 -1.2044 2.0714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492495340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:21 Heat of formation + Delta-G solvation = -98.921596 kcal Electronic energy + Delta-G solvation = -27990.701135 eV Core-core repulsion = 23847.665087 eV Total energy + Delta-G solvation = -4143.036047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.87045 -39.12115 -38.57464 -37.38769 -36.47762 -34.58801 -33.02302 -32.13208 -31.39920 -30.09712 -28.26799 -27.43661 -26.55431 -25.60249 -25.16132 -22.88044 -21.82722 -21.72094 -20.87564 -19.22993 -17.91480 -17.45677 -17.26851 -17.01579 -16.63193 -16.18636 -15.70098 -15.41759 -14.94860 -14.86342 -14.54895 -14.46143 -14.24429 -14.08517 -13.67332 -13.52103 -13.18616 -13.09356 -12.87518 -12.68208 -12.43571 -12.35902 -12.15759 -12.10447 -11.66817 -11.55283 -11.35088 -11.28089 -10.97024 -10.67464 -10.61586 -10.38849 -10.14501 -9.89415 -9.49101 -9.40287 -9.13967 -8.94184 -8.68113 -7.93271 -6.85171 -6.43871 -3.99652 1.29343 2.44377 2.70150 3.02362 3.14938 3.17311 3.18726 3.36392 3.62582 3.68490 3.98889 4.54725 4.64001 4.70915 4.71209 4.95017 4.97954 5.05671 5.08933 5.12993 5.17428 5.24455 5.25219 5.28582 5.29186 5.35607 5.44125 5.54294 5.60960 5.74440 5.77208 5.87206 6.27513 6.35886 6.44580 6.51212 6.61643 6.70781 6.80879 6.83217 7.05784 7.14125 7.37666 7.46814 7.52421 7.69374 7.94563 8.02629 8.57132 9.01776 9.74202 10.74061 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.002231 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.925769 B =12548.276093 C =14013.078279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.041 3.959 4 C 0.083 3.917 5 H 0.076 0.924 6 C 0.126 3.874 7 N -0.731 5.731 8 C 0.540 3.460 9 O -0.512 6.512 10 C -0.263 4.263 11 C 0.026 3.974 12 C -0.183 4.183 13 C 0.003 3.997 14 C -0.200 4.200 15 C 0.169 3.831 16 O -0.173 6.173 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.247 4.247 26 C -0.043 4.043 27 O -0.376 6.376 28 C 0.031 3.969 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.397 0.603 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.271 0.729 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.053 0.947 45 H 0.039 0.961 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.303 -23.640 7.806 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.036 4.036 4 C 0.024 3.976 5 H 0.094 0.906 6 C 0.002 3.998 7 N -0.385 5.385 8 C 0.329 3.671 9 O -0.388 6.388 10 C -0.284 4.284 11 C 0.006 3.994 12 C -0.184 4.184 13 C -0.015 4.015 14 C -0.219 4.219 15 C 0.114 3.886 16 O -0.076 6.076 17 C -0.466 4.466 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.266 4.266 26 C -0.062 4.062 27 O -0.295 6.295 28 C -0.065 4.065 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.230 0.770 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.143 0.857 43 H 0.124 0.876 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.930 -22.678 7.573 23.987 hybrid contribution 0.136 0.291 0.322 0.455 sum -1.794 -22.387 7.895 23.806 Atomic orbital electron populations 1.22758 0.80695 1.02758 1.00277 1.87821 1.20043 1.27578 1.95524 1.23033 0.93464 0.85371 1.01733 1.22368 0.92029 0.94872 0.88336 0.90585 1.21230 0.81041 0.94233 1.03316 1.45771 1.05989 1.10962 1.75733 1.18480 0.87961 0.83782 0.76846 1.91006 1.74325 1.25722 1.47712 1.22602 0.92697 1.00221 1.12852 1.22336 0.98238 0.91342 0.87488 1.18289 1.04755 0.91987 1.03399 1.20430 0.91603 0.96176 0.93307 1.19994 1.06011 0.90059 1.05878 1.19535 0.90680 0.88072 0.90279 1.83921 1.53362 1.12069 1.58208 1.21331 1.13204 0.80246 1.31800 0.88995 1.25321 0.95715 0.99197 0.96343 1.70011 1.18872 1.29446 1.31182 0.85772 0.78747 0.79815 0.79061 1.19450 1.20281 1.19468 1.20963 1.03983 0.99024 1.02677 1.20736 0.97106 0.91369 0.96957 1.87944 1.87711 1.21249 1.32599 1.22859 1.00611 0.81239 1.01813 0.89615 0.93888 0.93866 0.91859 0.91781 0.89691 0.90737 0.76957 0.86146 0.86045 0.88117 0.86856 0.91926 0.85659 0.87608 0.92812 0.94239 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.55 9.29 -40.08 -0.37 -3.92 16 3 C 0.04 0.36 5.60 37.15 0.21 0.57 16 4 C 0.08 0.74 2.56 -26.74 -0.07 0.68 16 5 H 0.08 0.62 7.66 -51.93 -0.40 0.22 16 6 C 0.13 1.39 5.36 -4.04 -0.02 1.37 16 7 N -0.73 -8.38 5.47 -61.76 -0.34 -8.72 16 8 C 0.54 8.08 6.85 -13.04 -0.09 7.99 16 9 O -0.51 -10.06 12.43 5.17 0.06 -10.00 16 10 C -0.26 -3.35 9.90 -37.51 -0.37 -3.73 16 11 C 0.03 0.36 9.78 -37.19 -0.36 0.00 16 12 C -0.18 -3.41 4.41 -105.03 -0.46 -3.88 16 13 C 0.00 0.07 6.72 -39.15 -0.26 -0.20 16 14 C -0.20 -4.60 9.97 -39.46 -0.39 -5.00 16 15 C 0.17 4.33 6.66 -38.88 -0.26 4.07 16 16 O -0.17 -5.12 9.74 0.75 0.01 -5.11 16 17 C -0.39 -11.15 9.44 30.91 0.29 -10.86 16 18 H 0.09 2.43 5.27 -52.49 -0.28 2.16 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16 21 Si 0.94 20.83 29.55 -169.99 -5.02 15.80 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 C -0.25 -5.70 9.11 -39.46 -0.36 -6.06 16 26 C -0.04 -0.85 9.78 -39.15 -0.38 -1.24 16 27 O -0.38 -3.74 10.10 -40.08 -0.40 -4.14 16 28 C 0.03 0.23 10.71 101.05 1.08 1.31 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.40 3.53 8.33 -40.82 -0.34 3.19 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.10 1.81 7.29 -52.49 -0.38 1.43 16 40 H 0.11 2.53 8.06 -52.49 -0.42 2.11 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.13 2.86 5.69 -52.49 -0.30 2.56 16 43 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 44 H 0.05 0.42 6.91 -51.92 -0.36 0.06 16 45 H 0.04 0.24 7.98 -51.93 -0.41 -0.18 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -35.01 389.75 -6.55 -41.56 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.68 Total: 6.19 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -0.44 Total: -12.66 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.42 Total: -33.59 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.71 Total: -23.17 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.01 -6.55 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492495340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.365 kcal (2) G-P(sol) polarization free energy of solvation -35.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds