Wall clock time and date at job start Tue Mar 31 2020 19:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00248 * 2 1 4 4 C 1.52992 * 109.47555 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47427 * 54.99713 * 4 3 2 6 6 C 1.52999 * 109.47417 * 175.00248 * 4 3 2 7 7 N 1.46498 * 109.47070 * 182.02226 * 6 4 3 8 8 C 1.34779 * 119.99951 * 175.01823 * 7 6 4 9 9 O 1.21721 * 119.99990 * 0.02562 * 8 7 6 10 10 C 1.46251 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.35023 * 120.00018 * 173.17076 * 10 8 7 12 12 C 1.46960 * 120.00189 * 347.92147 * 11 10 8 13 13 C 1.40021 * 120.09959 * 314.18448 * 12 11 10 14 14 C 1.37600 * 119.89788 * 179.69764 * 13 12 11 15 15 C 1.39181 * 120.10153 * 0.59876 * 14 13 12 16 16 O 1.35567 * 119.90153 * 179.69656 * 15 14 13 17 17 C 1.34782 * 116.99954 * 185.80604 * 16 15 14 18 18 H 1.07994 * 119.99772 * 5.36243 * 17 16 15 19 19 C 1.38720 * 119.99677 * 185.35308 * 17 16 15 20 20 N 1.31511 * 120.00325 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99726 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47234 * 60.00135 * 21 19 17 23 23 H 1.48504 * 109.47070 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46921 * 300.00216 * 21 19 17 25 25 C 1.39183 * 120.19777 * 359.67513 * 15 14 13 26 26 C 1.37596 * 120.10313 * 0.02562 * 25 15 14 27 27 O 1.42907 * 109.47040 * 295.00179 * 4 3 2 28 28 C 1.42894 * 114.00204 * 95.03752 * 27 4 3 29 29 H 1.09004 * 109.47448 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47035 * 299.99975 * 1 2 3 31 31 H 1.09001 * 109.47126 * 59.99967 * 1 2 3 32 32 H 1.09005 * 109.47024 * 59.99600 * 3 2 1 33 33 H 1.09007 * 109.46959 * 300.00391 * 3 2 1 34 34 H 1.08996 * 109.46527 * 302.01923 * 6 4 3 35 35 H 1.08999 * 109.47047 * 62.02063 * 6 4 3 36 36 H 0.96998 * 120.00444 * 355.02555 * 7 6 4 37 37 H 1.07997 * 120.00064 * 353.18470 * 10 8 7 38 38 H 1.08005 * 120.00006 * 167.91095 * 11 10 8 39 39 H 1.07999 * 120.05118 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.95250 * 180.27490 * 14 13 12 41 41 H 0.96994 * 120.00399 * 179.97438 * 20 19 17 42 42 H 1.07995 * 119.94174 * 179.97438 * 25 15 14 43 43 H 1.08004 * 120.04690 * 180.02562 * 26 25 15 44 44 H 1.09008 * 109.47356 * 294.97146 * 28 27 4 45 45 H 1.09005 * 109.47403 * 54.96996 * 28 27 4 46 46 H 1.08996 * 109.47288 * 174.97068 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5686 -0.8427 6 6 4.1572 2.5770 -0.1263 7 7 5.6165 2.4574 -0.1755 8 6 6.3755 3.5509 -0.3866 9 8 5.8486 4.6380 -0.5360 10 6 7.8323 3.4317 -0.4352 11 6 8.5857 4.4970 -0.7825 12 6 7.9507 5.6878 -1.3643 13 6 6.9968 5.5495 -2.3800 14 6 6.4003 6.6669 -2.9175 15 6 6.7527 7.9339 -2.4617 16 8 6.1669 9.0323 -2.9984 17 6 6.6360 10.2318 -2.6012 18 1 7.4988 10.2867 -1.9539 19 6 6.0108 11.3957 -3.0240 20 7 4.9601 11.3287 -3.8120 21 14 6.6615 13.0581 -2.4741 22 1 8.0645 13.2172 -2.9337 23 1 5.8234 14.1357 -3.0586 24 1 6.6134 13.1429 -0.9923 25 6 7.7045 8.0764 -1.4562 26 6 8.3018 6.9644 -0.9086 27 8 3.9658 0.5792 1.2202 28 6 4.1566 -0.8342 1.1323 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8465 0.8900 33 1 1.6885 1.8465 -0.8900 34 1 3.8007 3.0529 -1.0397 35 1 3.8710 3.1818 0.7342 36 1 6.0365 1.5912 -0.0562 37 1 8.3056 2.4915 -0.1935 38 1 9.6551 4.4742 -0.6326 39 1 6.7265 4.5670 -2.7379 40 1 5.6612 6.5610 -3.6979 41 1 4.5227 12.1425 -4.1074 42 1 7.9752 9.0615 -1.1060 43 1 9.0400 7.0761 -0.1282 44 1 3.1996 -1.3187 0.9384 45 1 4.8481 -1.0577 0.3198 46 1 4.5676 -1.2044 2.0714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492495340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:20 Heat of formation + Delta-G solvation = -124.775774 kcal Electronic energy + Delta-G solvation = -27991.822256 eV Core-core repulsion = 23847.665087 eV Total energy + Delta-G solvation = -4144.157169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10998 -40.48534 -39.74549 -38.25803 -37.96595 -35.67601 -34.57957 -33.91540 -32.26957 -31.80643 -29.69992 -28.20171 -27.45468 -27.15034 -26.17635 -24.15706 -23.44840 -22.67942 -22.29336 -20.49997 -19.75836 -18.87199 -18.17705 -18.07526 -17.82534 -16.93791 -16.53754 -16.39526 -16.30140 -16.20700 -15.92851 -15.82633 -15.50821 -15.32639 -15.04670 -14.81285 -14.49681 -14.46615 -14.26129 -13.82849 -13.71023 -13.54515 -13.38244 -13.08153 -12.98630 -12.68844 -12.61470 -12.33589 -12.23039 -12.15362 -12.11891 -12.00937 -11.26158 -10.95878 -10.79887 -10.68110 -10.52318 -10.38416 -10.03389 -9.59167 -8.55646 -8.48035 -6.14710 0.03319 0.72538 1.11864 1.33861 1.47138 1.50920 2.16547 2.17947 2.48182 2.69065 2.87519 2.87638 3.23364 3.51900 3.77401 3.93477 4.02009 4.03724 4.10133 4.18449 4.20173 4.34045 4.43150 4.50987 4.52932 4.54393 4.56748 4.61216 4.63372 4.71584 4.78824 4.82513 4.85278 4.99489 5.06801 5.10707 5.27149 5.27728 5.47261 5.48735 5.69013 5.74087 5.85232 6.02956 6.08534 6.17342 6.26582 6.70299 6.96220 7.44873 7.78760 8.75446 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.002231 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.925769 B =12548.276093 C =14013.078279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.040 3.960 4 C 0.093 3.907 5 H 0.090 0.910 6 C 0.127 3.873 7 N -0.711 5.711 8 C 0.527 3.473 9 O -0.568 6.568 10 C -0.228 4.228 11 C 0.004 3.996 12 C -0.154 4.154 13 C 0.005 3.995 14 C -0.217 4.217 15 C 0.124 3.876 16 O -0.231 6.231 17 C -0.415 4.415 18 H 0.102 0.898 19 C -0.025 4.025 20 N -0.921 5.921 21 Si 1.021 2.979 22 H -0.255 1.255 23 H -0.270 1.270 24 H -0.258 1.258 25 C -0.256 4.256 26 C -0.051 4.051 27 O -0.395 6.395 28 C 0.028 3.972 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.414 0.586 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.273 0.727 42 H 0.119 0.881 43 H 0.147 0.853 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 -27.003 9.901 28.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.037 4.037 4 C 0.034 3.966 5 H 0.108 0.892 6 C 0.002 3.998 7 N -0.364 5.364 8 C 0.317 3.683 9 O -0.448 6.448 10 C -0.248 4.248 11 C -0.015 4.015 12 C -0.155 4.155 13 C -0.013 4.013 14 C -0.236 4.236 15 C 0.073 3.927 16 O -0.137 6.137 17 C -0.491 4.491 18 H 0.119 0.881 19 C -0.222 4.222 20 N -0.559 5.559 21 Si 0.840 3.160 22 H -0.179 1.179 23 H -0.195 1.195 24 H -0.183 1.183 25 C -0.276 4.276 26 C -0.069 4.069 27 O -0.314 6.314 28 C -0.068 4.068 29 H 0.119 0.881 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.251 0.749 37 H 0.191 0.809 38 H 0.187 0.813 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.137 0.863 43 H 0.164 0.836 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.653 -26.165 9.701 27.913 hybrid contribution -0.638 0.747 -0.149 0.994 sum 0.015 -25.418 9.552 27.153 Atomic orbital electron populations 1.22928 0.79480 1.03934 1.00697 1.87789 1.21408 1.27525 1.95610 1.23015 0.93425 0.85500 1.01796 1.22213 0.92018 0.93622 0.88715 0.89208 1.21194 0.80961 0.95476 1.02185 1.45635 1.06093 1.11047 1.73663 1.19104 0.89376 0.83570 0.76215 1.91015 1.75516 1.27965 1.50323 1.23052 0.90961 1.01528 1.09282 1.22579 1.00566 0.89342 0.89000 1.18881 1.01957 0.93773 1.00908 1.20690 0.91449 0.95827 0.93366 1.20195 1.06653 0.90531 1.06261 1.20028 0.92377 0.88063 0.92205 1.83884 1.55800 1.13088 1.60967 1.21826 1.14049 0.80816 1.32378 0.88086 1.26673 0.95874 1.03472 0.96187 1.70167 1.21220 1.30675 1.33857 0.84618 0.78592 0.73806 0.78986 1.17872 1.19481 1.18250 1.21103 1.03817 1.00225 1.02406 1.21174 0.97512 0.90696 0.97480 1.87919 1.87792 1.22709 1.32952 1.22991 1.00807 0.79784 1.03186 0.88116 0.93655 0.93287 0.92509 0.91131 0.90473 0.92501 0.74919 0.80900 0.81311 0.85986 0.87891 0.91772 0.86317 0.83576 0.93471 0.92550 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -6.78 9.29 -144.35 -1.34 -8.13 16 3 C 0.04 0.66 5.60 71.98 0.40 1.06 16 4 C 0.09 1.50 2.56 30.59 0.08 1.58 16 5 H 0.09 1.22 7.66 -2.39 -0.02 1.20 16 6 C 0.13 2.64 5.36 86.38 0.46 3.10 16 7 N -0.71 -14.06 5.47 -467.51 -2.56 -16.61 16 8 C 0.53 14.04 6.85 86.32 0.59 14.63 16 9 O -0.57 -21.68 12.43 -4.41 -0.05 -21.74 16 10 C -0.23 -4.46 9.90 23.61 0.23 -4.22 16 11 C 0.00 0.10 9.78 23.82 0.23 0.33 16 12 C -0.15 -5.35 4.41 -20.13 -0.09 -5.44 16 13 C 0.00 0.19 6.72 22.55 0.15 0.34 16 14 C -0.22 -10.53 9.97 22.35 0.22 -10.31 16 15 C 0.12 6.77 6.66 22.72 0.15 6.93 16 16 O -0.23 -14.84 9.74 -20.24 -0.20 -15.04 16 17 C -0.41 -25.36 9.44 67.94 0.64 -24.72 16 18 H 0.10 5.67 5.27 -2.91 -0.02 5.65 16 19 C -0.02 -1.46 5.49 84.86 0.47 -0.99 16 20 N -0.92 -58.59 13.67 21.62 0.30 -58.29 16 21 Si 1.02 44.31 29.55 68.60 2.03 46.34 16 22 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 25 C -0.26 -12.18 9.11 22.35 0.20 -11.98 16 26 C -0.05 -1.91 9.78 22.55 0.22 -1.69 16 27 O -0.39 -6.93 10.10 -144.35 -1.46 -8.38 16 28 C 0.03 0.34 10.71 113.37 1.21 1.55 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.41 5.45 8.33 -92.71 -0.77 4.67 16 37 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 38 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.12 4.19 7.29 -2.91 -0.02 4.17 16 40 H 0.10 5.01 8.06 -2.91 -0.02 4.99 16 41 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 42 H 0.12 5.65 5.69 -2.91 -0.02 5.64 16 43 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 44 H 0.05 0.63 6.91 -2.38 -0.02 0.62 16 45 H 0.06 0.48 7.98 -2.38 -0.02 0.46 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -84.82 389.75 3.37 -81.45 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.22 Total: 28.68 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 6.43 Total: -28.27 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -2.26 Total: -74.91 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -3.05 Total: -53.29 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -84.82 3.37 -81.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492495340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.324 kcal (2) G-P(sol) polarization free energy of solvation -84.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds