Wall clock time and date at job start Tue Mar 31 2020 19:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00328 * 2 1 4 4 C 1.53001 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47071 * 305.00319 * 4 3 2 6 6 C 1.52994 * 109.47369 * 184.99687 * 4 3 2 7 7 N 1.46504 * 109.47495 * 180.02562 * 6 4 3 8 8 C 1.34772 * 120.00606 * 180.02562 * 7 6 4 9 9 O 1.21721 * 119.99474 * 359.97438 * 8 7 6 10 10 C 1.46251 * 120.00400 * 180.02562 * 8 7 6 11 11 C 1.35024 * 120.00158 * 173.06793 * 10 8 7 12 12 C 1.46959 * 119.99972 * 348.87015 * 11 10 8 13 13 C 1.40028 * 120.09993 * 311.82228 * 12 11 10 14 14 C 1.37601 * 119.89483 * 179.69965 * 13 12 11 15 15 C 1.39173 * 120.10144 * 0.59067 * 14 13 12 16 16 O 1.35574 * 119.90009 * 179.69756 * 15 14 13 17 17 C 1.34776 * 117.00116 * 185.62203 * 16 15 14 18 18 H 1.08003 * 119.99890 * 354.90199 * 17 16 15 19 19 C 1.38720 * 120.00019 * 174.91044 * 17 16 15 20 20 N 1.31509 * 119.99882 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00131 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47027 * 89.99403 * 21 19 17 23 23 H 1.48500 * 109.46996 * 210.00013 * 21 19 17 24 24 H 1.48503 * 109.46944 * 329.99831 * 21 19 17 25 25 C 1.39177 * 120.20436 * 359.68411 * 15 14 13 26 26 C 1.37604 * 120.10114 * 0.02562 * 25 15 14 27 27 O 1.42905 * 109.46973 * 64.99782 * 4 3 2 28 28 C 1.42899 * 114.00225 * 270.00144 * 27 4 3 29 29 H 1.09006 * 109.46908 * 60.00085 * 1 2 3 30 30 H 1.08999 * 109.47712 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46940 * 300.00287 * 1 2 3 32 32 H 1.08998 * 109.47338 * 60.00036 * 3 2 1 33 33 H 1.09005 * 109.47062 * 299.99765 * 3 2 1 34 34 H 1.09000 * 109.47449 * 60.00156 * 6 4 3 35 35 H 1.08997 * 109.47539 * 300.00345 * 6 4 3 36 36 H 0.97006 * 119.99664 * 359.97438 * 7 6 4 37 37 H 1.08007 * 119.99914 * 353.06527 * 10 8 7 38 38 H 1.08003 * 119.99777 * 168.59075 * 11 10 8 39 39 H 1.08002 * 120.05239 * 359.97438 * 13 12 11 40 40 H 1.07998 * 119.94517 * 180.26976 * 14 13 12 41 41 H 0.96995 * 119.99826 * 179.97438 * 20 19 17 42 42 H 1.07998 * 119.95042 * 179.97438 * 25 15 14 43 43 H 1.08001 * 120.05290 * 180.02562 * 26 25 15 44 44 H 1.09003 * 109.46923 * 300.00555 * 28 27 4 45 45 H 1.09006 * 109.46863 * 59.99625 * 28 27 4 46 46 H 1.08993 * 109.47447 * 180.02562 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8508 0.5684 0.8426 6 6 4.1574 2.5767 0.1263 7 7 5.6178 2.4611 0.1263 8 6 6.3814 3.5669 0.2285 9 8 5.8576 4.6618 0.3203 10 6 7.8394 3.4515 0.2279 11 6 8.6046 4.5633 0.1889 12 6 7.9915 5.8677 -0.0981 13 6 7.1162 6.0089 -1.1819 14 6 6.5397 7.2307 -1.4430 15 6 6.8349 8.3279 -0.6393 16 8 6.2693 9.5313 -0.9041 17 6 6.6836 10.5783 -0.1634 18 1 7.3720 10.4228 0.6540 19 6 6.2255 11.8558 -0.4510 20 7 5.3875 12.0452 -1.4466 21 14 6.7992 13.3069 0.5760 22 1 8.0300 13.8819 -0.0237 23 1 5.7345 14.3416 0.6089 24 1 7.0890 12.8507 1.9591 25 6 7.7087 8.1936 0.4355 26 6 8.2854 6.9743 0.7079 27 8 3.9658 0.5790 -1.2202 28 6 4.0472 -0.8466 -1.1648 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8292 3.0386 1.0574 35 1 3.8421 3.1929 -0.7157 36 1 6.0352 1.5885 0.0535 37 1 8.3040 2.4770 0.2587 38 1 9.6666 4.4946 0.3732 39 1 6.8905 5.1592 -1.8092 40 1 5.8611 7.3396 -2.2761 41 1 5.0669 12.9383 -1.6474 42 1 7.9353 9.0478 1.0563 43 1 8.9631 6.8708 1.5425 44 1 4.7578 -1.1402 -0.3921 45 1 3.0652 -1.2577 -0.9305 46 1 4.3810 -1.2292 -2.1292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492495341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:25 Heat of formation + Delta-G solvation = -98.762900 kcal Electronic energy + Delta-G solvation = -28006.889732 eV Core-core repulsion = 23863.860566 eV Total energy + Delta-G solvation = -4143.029166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.86068 -39.12688 -38.57240 -37.37115 -36.46539 -34.59088 -33.01730 -32.11820 -31.39177 -30.08079 -28.26953 -27.46140 -26.52113 -25.60062 -25.16007 -22.87335 -21.82181 -21.71141 -20.86615 -19.22624 -17.89666 -17.46384 -17.27043 -17.02596 -16.62890 -16.21083 -15.70215 -15.42103 -14.96100 -14.76854 -14.52447 -14.45425 -14.27894 -14.04320 -13.69151 -13.52835 -13.23112 -12.99818 -12.91346 -12.67423 -12.48111 -12.32106 -12.14833 -12.12703 -11.67598 -11.54511 -11.30281 -11.28547 -10.97562 -10.64994 -10.59500 -10.39924 -10.16011 -9.87297 -9.48067 -9.34746 -9.14282 -8.93425 -8.67762 -7.92800 -6.84334 -6.42400 -3.98306 1.31887 2.45571 2.69221 3.01376 3.15636 3.16709 3.20859 3.37455 3.62210 3.68010 3.99879 4.53395 4.63365 4.69881 4.72070 4.93382 4.96851 5.06437 5.07842 5.14203 5.18403 5.24265 5.25475 5.27846 5.30518 5.37814 5.44098 5.57571 5.61821 5.74400 5.77995 5.89037 6.28240 6.37400 6.44810 6.51313 6.62334 6.68867 6.82722 6.84430 7.07245 7.15627 7.39631 7.48101 7.53990 7.69839 7.96081 8.04399 8.57443 9.03379 9.76198 10.75663 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.002218 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.406431 B =12618.201169 C =13954.973582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.039 3.961 4 C 0.083 3.917 5 H 0.074 0.926 6 C 0.128 3.872 7 N -0.730 5.730 8 C 0.539 3.461 9 O -0.511 6.511 10 C -0.260 4.260 11 C 0.024 3.976 12 C -0.181 4.181 13 C 0.000 4.000 14 C -0.198 4.198 15 C 0.169 3.831 16 O -0.174 6.174 17 C -0.389 4.389 18 H 0.093 0.907 19 C 0.038 3.962 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.267 1.267 25 C -0.247 4.247 26 C -0.045 4.045 27 O -0.375 6.375 28 C 0.030 3.970 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.397 0.603 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.270 0.730 42 H 0.126 0.874 43 H 0.105 0.895 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.237 -25.376 3.926 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.038 4.038 4 C 0.025 3.975 5 H 0.092 0.908 6 C 0.004 3.996 7 N -0.384 5.384 8 C 0.329 3.671 9 O -0.387 6.387 10 C -0.281 4.281 11 C 0.005 3.995 12 C -0.182 4.182 13 C -0.018 4.018 14 C -0.217 4.217 15 C 0.114 3.886 16 O -0.077 6.077 17 C -0.466 4.466 18 H 0.111 0.889 19 C -0.166 4.166 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.266 4.266 26 C -0.063 4.063 27 O -0.294 6.294 28 C -0.067 4.067 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.231 0.769 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.080 0.920 42 H 0.143 0.857 43 H 0.124 0.876 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.798 -24.332 3.555 24.749 hybrid contribution 0.084 0.142 0.784 0.801 sum -2.714 -24.190 4.339 24.726 Atomic orbital electron populations 1.22762 0.80708 1.02762 1.00293 1.87818 1.20058 1.27590 1.95517 1.23079 0.93588 0.85374 1.01765 1.22351 0.91914 0.94879 0.88405 0.90784 1.21197 0.81031 0.94166 1.03253 1.45753 1.05790 1.09861 1.76990 1.18478 0.88003 0.83785 0.76834 1.91006 1.74632 1.25419 1.47666 1.22626 0.92561 0.98914 1.13967 1.22340 0.98111 0.91856 0.87210 1.18287 1.06113 0.92481 1.01279 1.20440 0.91879 0.94820 0.94709 1.20005 1.06891 0.91883 1.02951 1.19523 0.90100 0.86985 0.91986 1.83909 1.55495 1.12939 1.55345 1.21381 1.28389 0.84110 1.12683 0.88943 1.25318 0.96326 0.97909 0.97062 1.70024 1.29331 1.22992 1.27228 0.85702 0.78428 0.79817 0.79430 1.19862 1.20275 1.19171 1.20957 1.05203 0.98331 1.02100 1.20715 0.97105 0.91595 0.96893 1.87960 1.87733 1.20128 1.33568 1.22875 1.01078 0.80784 1.01929 0.93823 0.89609 0.93914 0.91894 0.91749 0.90052 0.90412 0.76925 0.86136 0.86030 0.88041 0.86832 0.92010 0.85671 0.87650 0.94391 0.92455 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.45 8.83 -40.08 -0.35 -3.80 16 3 C 0.04 0.33 5.60 37.16 0.21 0.54 16 4 C 0.08 0.74 2.58 -26.73 -0.07 0.67 16 5 H 0.07 0.58 7.79 -51.93 -0.40 0.18 16 6 C 0.13 1.40 5.37 -4.04 -0.02 1.38 16 7 N -0.73 -8.36 5.44 -61.76 -0.34 -8.70 16 8 C 0.54 8.07 6.95 -13.04 -0.09 7.98 16 9 O -0.51 -10.04 12.48 5.17 0.06 -9.97 16 10 C -0.26 -3.31 9.92 -37.51 -0.37 -3.68 16 11 C 0.02 0.35 9.77 -37.19 -0.36 -0.02 16 12 C -0.18 -3.38 4.34 -105.03 -0.46 -3.84 16 13 C 0.00 0.00 6.77 -39.14 -0.27 -0.26 16 14 C -0.20 -4.62 9.97 -39.47 -0.39 -5.01 16 15 C 0.17 4.35 6.66 -38.89 -0.26 4.09 16 16 O -0.17 -5.18 9.74 0.74 0.01 -5.18 16 17 C -0.39 -11.20 9.48 30.91 0.29 -10.91 16 18 H 0.09 2.46 5.18 -52.48 -0.27 2.19 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 21 Si 0.94 20.91 29.55 -169.99 -5.02 15.88 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 C -0.25 -5.71 9.14 -39.46 -0.36 -6.07 16 26 C -0.04 -0.88 9.78 -39.14 -0.38 -1.27 16 27 O -0.38 -3.79 10.09 -40.08 -0.40 -4.19 16 28 C 0.03 0.22 10.71 101.05 1.08 1.31 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.40 3.53 8.33 -40.82 -0.34 3.19 16 37 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 38 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.10 1.89 7.46 -52.49 -0.39 1.50 16 40 H 0.11 2.58 8.06 -52.49 -0.42 2.16 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.13 2.86 5.62 -52.49 -0.29 2.57 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.04 0.23 8.09 -51.93 -0.42 -0.19 16 45 H 0.06 0.45 6.40 -51.93 -0.33 0.12 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -35.16 389.22 -6.52 -41.68 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.66 Total: 6.21 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.43 Total: -12.81 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.42 Total: -33.69 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.69 Total: -23.14 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.16 -6.52 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492495341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.086 kcal (2) G-P(sol) polarization free energy of solvation -35.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds