Wall clock time and date at job start Tue Mar 31 2020 19:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00328 * 2 1 4 4 C 1.53001 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47071 * 305.00319 * 4 3 2 6 6 C 1.52994 * 109.47369 * 184.99687 * 4 3 2 7 7 N 1.46504 * 109.47495 * 180.02562 * 6 4 3 8 8 C 1.34772 * 120.00606 * 180.02562 * 7 6 4 9 9 O 1.21721 * 119.99474 * 359.97438 * 8 7 6 10 10 C 1.46251 * 120.00400 * 180.02562 * 8 7 6 11 11 C 1.35024 * 120.00158 * 173.06793 * 10 8 7 12 12 C 1.46959 * 119.99972 * 348.87015 * 11 10 8 13 13 C 1.40028 * 120.09993 * 311.82228 * 12 11 10 14 14 C 1.37601 * 119.89483 * 179.69965 * 13 12 11 15 15 C 1.39173 * 120.10144 * 0.59067 * 14 13 12 16 16 O 1.35574 * 119.90009 * 179.69756 * 15 14 13 17 17 C 1.34776 * 117.00116 * 185.62203 * 16 15 14 18 18 H 1.08003 * 119.99890 * 354.90199 * 17 16 15 19 19 C 1.38720 * 120.00019 * 174.91044 * 17 16 15 20 20 N 1.31509 * 119.99882 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00131 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47027 * 89.99403 * 21 19 17 23 23 H 1.48500 * 109.46996 * 210.00013 * 21 19 17 24 24 H 1.48503 * 109.46944 * 329.99831 * 21 19 17 25 25 C 1.39177 * 120.20436 * 359.68411 * 15 14 13 26 26 C 1.37604 * 120.10114 * 0.02562 * 25 15 14 27 27 O 1.42905 * 109.46973 * 64.99782 * 4 3 2 28 28 C 1.42899 * 114.00225 * 270.00144 * 27 4 3 29 29 H 1.09006 * 109.46908 * 60.00085 * 1 2 3 30 30 H 1.08999 * 109.47712 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46940 * 300.00287 * 1 2 3 32 32 H 1.08998 * 109.47338 * 60.00036 * 3 2 1 33 33 H 1.09005 * 109.47062 * 299.99765 * 3 2 1 34 34 H 1.09000 * 109.47449 * 60.00156 * 6 4 3 35 35 H 1.08997 * 109.47539 * 300.00345 * 6 4 3 36 36 H 0.97006 * 119.99664 * 359.97438 * 7 6 4 37 37 H 1.08007 * 119.99914 * 353.06527 * 10 8 7 38 38 H 1.08003 * 119.99777 * 168.59075 * 11 10 8 39 39 H 1.08002 * 120.05239 * 359.97438 * 13 12 11 40 40 H 1.07998 * 119.94517 * 180.26976 * 14 13 12 41 41 H 0.96995 * 119.99826 * 179.97438 * 20 19 17 42 42 H 1.07998 * 119.95042 * 179.97438 * 25 15 14 43 43 H 1.08001 * 120.05290 * 180.02562 * 26 25 15 44 44 H 1.09003 * 109.46923 * 300.00555 * 28 27 4 45 45 H 1.09006 * 109.46863 * 59.99625 * 28 27 4 46 46 H 1.08993 * 109.47447 * 180.02562 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8508 0.5684 0.8426 6 6 4.1574 2.5767 0.1263 7 7 5.6178 2.4611 0.1263 8 6 6.3814 3.5669 0.2285 9 8 5.8576 4.6618 0.3203 10 6 7.8394 3.4515 0.2279 11 6 8.6046 4.5633 0.1889 12 6 7.9915 5.8677 -0.0981 13 6 7.1162 6.0089 -1.1819 14 6 6.5397 7.2307 -1.4430 15 6 6.8349 8.3279 -0.6393 16 8 6.2693 9.5313 -0.9041 17 6 6.6836 10.5783 -0.1634 18 1 7.3720 10.4228 0.6540 19 6 6.2255 11.8558 -0.4510 20 7 5.3875 12.0452 -1.4466 21 14 6.7992 13.3069 0.5760 22 1 8.0300 13.8819 -0.0237 23 1 5.7345 14.3416 0.6089 24 1 7.0890 12.8507 1.9591 25 6 7.7087 8.1936 0.4355 26 6 8.2854 6.9743 0.7079 27 8 3.9658 0.5790 -1.2202 28 6 4.0472 -0.8466 -1.1648 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8292 3.0386 1.0574 35 1 3.8421 3.1929 -0.7157 36 1 6.0352 1.5885 0.0535 37 1 8.3040 2.4770 0.2587 38 1 9.6666 4.4946 0.3732 39 1 6.8905 5.1592 -1.8092 40 1 5.8611 7.3396 -2.2761 41 1 5.0669 12.9383 -1.6474 42 1 7.9353 9.0478 1.0563 43 1 8.9631 6.8708 1.5425 44 1 4.7578 -1.1402 -0.3921 45 1 3.0652 -1.2577 -0.9305 46 1 4.3810 -1.2292 -2.1292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492495341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:24 Heat of formation + Delta-G solvation = -124.739492 kcal Electronic energy + Delta-G solvation = -28008.016162 eV Core-core repulsion = 23863.860566 eV Total energy + Delta-G solvation = -4144.155595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.09534 -40.48710 -39.75738 -38.25527 -37.94986 -35.67710 -34.57807 -33.91360 -32.25923 -31.80953 -29.70437 -28.22177 -27.45429 -27.12988 -26.17577 -24.14859 -23.45973 -22.67231 -22.28902 -20.49428 -19.75801 -18.87957 -18.18504 -18.07291 -17.82551 -16.95586 -16.52910 -16.37224 -16.29743 -16.23193 -15.88145 -15.83642 -15.50810 -15.25590 -15.06833 -14.86869 -14.49855 -14.47901 -14.22521 -13.86301 -13.71248 -13.56196 -13.37916 -13.06831 -12.97180 -12.70918 -12.60640 -12.36578 -12.20361 -12.15242 -12.12178 -11.99717 -11.22012 -10.96067 -10.80293 -10.66553 -10.50737 -10.38669 -10.02269 -9.60719 -8.56937 -8.47504 -6.14641 0.05801 0.71881 1.09696 1.34016 1.45849 1.52513 2.17084 2.18061 2.49232 2.69345 2.87170 2.87231 3.23287 3.51733 3.77446 3.94094 4.01873 4.03605 4.10475 4.17815 4.19580 4.33963 4.43326 4.51041 4.52437 4.55043 4.56057 4.61192 4.64092 4.73454 4.78210 4.82768 4.85804 5.01744 5.07260 5.11026 5.27312 5.27978 5.47479 5.49389 5.68849 5.73691 5.84550 6.03480 6.08035 6.18447 6.26374 6.71121 6.96470 7.45619 7.79248 8.75957 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.002218 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.406431 B =12618.201169 C =13954.973582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.038 3.962 4 C 0.093 3.907 5 H 0.092 0.908 6 C 0.128 3.872 7 N -0.711 5.711 8 C 0.526 3.474 9 O -0.568 6.568 10 C -0.225 4.225 11 C 0.003 3.997 12 C -0.150 4.150 13 C 0.000 4.000 14 C -0.216 4.216 15 C 0.124 3.876 16 O -0.232 6.232 17 C -0.415 4.415 18 H 0.103 0.897 19 C -0.026 4.026 20 N -0.922 5.922 21 Si 1.023 2.977 22 H -0.261 1.261 23 H -0.270 1.270 24 H -0.253 1.253 25 C -0.254 4.254 26 C -0.051 4.051 27 O -0.396 6.396 28 C 0.027 3.973 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.414 0.586 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.273 0.727 42 H 0.120 0.880 43 H 0.148 0.852 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 -29.193 6.030 29.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.039 4.039 4 C 0.035 3.965 5 H 0.110 0.890 6 C 0.003 3.997 7 N -0.364 5.364 8 C 0.317 3.683 9 O -0.448 6.448 10 C -0.245 4.245 11 C -0.017 4.017 12 C -0.151 4.151 13 C -0.018 4.018 14 C -0.236 4.236 15 C 0.073 3.927 16 O -0.139 6.139 17 C -0.491 4.491 18 H 0.120 0.880 19 C -0.223 4.223 20 N -0.560 5.560 21 Si 0.841 3.159 22 H -0.185 1.185 23 H -0.195 1.195 24 H -0.176 1.176 25 C -0.273 4.273 26 C -0.068 4.068 27 O -0.316 6.316 28 C -0.068 4.068 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.251 0.749 37 H 0.192 0.808 38 H 0.188 0.812 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.166 0.834 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.375 -28.277 5.664 28.841 hybrid contribution -0.661 0.732 0.135 0.995 sum -1.036 -27.545 5.799 28.168 Atomic orbital electron populations 1.22931 0.79512 1.03942 1.00687 1.87787 1.21392 1.27471 1.95598 1.23053 0.93518 0.85533 1.01804 1.22220 0.91927 0.93632 0.88765 0.89043 1.21175 0.80917 0.95369 1.02217 1.45619 1.05923 1.09972 1.74887 1.19108 0.89450 0.83594 0.76186 1.91014 1.75811 1.27623 1.50335 1.23077 0.90823 1.00906 1.09740 1.22581 1.00509 0.89234 0.89349 1.18871 1.02876 0.94717 0.98639 1.20669 0.91737 0.93767 0.95625 1.20183 1.07628 0.92901 1.02840 1.19998 0.92103 0.86591 0.94007 1.83876 1.58254 1.14343 1.57393 1.21884 1.29100 0.84770 1.13301 0.88009 1.26686 0.96218 1.00895 0.98466 1.70180 1.31908 1.23879 1.30029 0.84542 0.78233 0.75204 0.77906 1.18538 1.19510 1.17620 1.21103 1.05033 0.99945 1.01265 1.21161 0.97215 0.90403 0.98068 1.87931 1.87846 1.21628 1.34148 1.22993 1.01346 0.79369 1.03135 0.93843 0.88089 0.93136 0.90881 0.92814 0.90168 0.92799 0.74900 0.80832 0.81230 0.86320 0.88128 0.91793 0.86215 0.83447 0.92589 0.93025 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -6.54 8.83 -144.34 -1.27 -7.81 16 3 C 0.04 0.62 5.60 71.98 0.40 1.02 16 4 C 0.09 1.49 2.58 30.59 0.08 1.57 16 5 H 0.09 1.16 7.79 -2.39 -0.02 1.14 16 6 C 0.13 2.65 5.37 86.38 0.46 3.11 16 7 N -0.71 -14.09 5.44 -467.51 -2.54 -16.63 16 8 C 0.53 14.07 6.95 86.33 0.60 14.67 16 9 O -0.57 -21.71 12.48 -4.42 -0.06 -21.77 16 10 C -0.23 -4.42 9.92 23.61 0.23 -4.18 16 11 C 0.00 0.06 9.77 23.82 0.23 0.29 16 12 C -0.15 -5.25 4.34 -20.13 -0.09 -5.34 16 13 C 0.00 0.01 6.77 22.55 0.15 0.16 16 14 C -0.22 -10.70 9.97 22.34 0.22 -10.48 16 15 C 0.12 6.81 6.66 22.72 0.15 6.96 16 16 O -0.23 -15.02 9.74 -20.26 -0.20 -15.22 16 17 C -0.41 -25.44 9.48 67.94 0.64 -24.80 16 18 H 0.10 5.73 5.18 -2.91 -0.02 5.72 16 19 C -0.03 -1.51 5.49 84.86 0.47 -1.04 16 20 N -0.92 -58.84 13.67 21.62 0.30 -58.54 16 21 Si 1.02 44.42 29.55 68.60 2.03 46.44 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 24 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 25 C -0.25 -12.10 9.14 22.35 0.20 -11.90 16 26 C -0.05 -1.90 9.78 22.55 0.22 -1.68 16 27 O -0.40 -7.20 10.09 -144.34 -1.46 -8.66 16 28 C 0.03 0.34 10.71 113.37 1.21 1.56 16 29 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.41 5.48 8.33 -92.70 -0.77 4.70 16 37 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.12 4.29 7.46 -2.91 -0.02 4.27 16 40 H 0.10 5.04 8.06 -2.91 -0.02 5.01 16 41 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 42 H 0.12 5.69 5.62 -2.91 -0.02 5.68 16 43 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 44 H 0.06 0.49 8.09 -2.39 -0.02 0.47 16 45 H 0.05 0.71 6.40 -2.38 -0.02 0.70 16 46 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -85.43 389.22 3.47 -81.96 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.22 Total: 28.78 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 6.45 Total: -28.55 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -2.25 Total: -75.17 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -2.98 Total: -53.46 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -85.43 3.47 -81.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492495341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.780 kcal (2) G-P(sol) polarization free energy of solvation -85.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds