Wall clock time and date at job start Tue Mar 31 2020 19:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00258 * 2 1 4 4 C 1.52995 * 109.47179 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46969 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47369 * 55.00312 * 5 4 3 7 7 C 1.53009 * 109.46815 * 174.99770 * 5 4 3 8 8 O 1.42899 * 109.47286 * 54.99845 * 7 5 4 9 9 N 1.46498 * 109.47090 * 294.99672 * 5 4 3 10 10 C 1.34770 * 120.00106 * 155.00328 * 9 5 4 11 11 O 1.21726 * 119.99829 * 359.97438 * 10 9 5 12 12 C 1.46253 * 120.00035 * 180.02562 * 10 9 5 13 13 C 1.35032 * 120.00019 * 173.21134 * 12 10 9 14 14 C 1.46963 * 119.99830 * 348.68314 * 13 12 10 15 15 C 1.40021 * 120.09815 * 316.40718 * 14 13 12 16 16 C 1.37598 * 119.89557 * 179.70006 * 15 14 13 17 17 C 1.39177 * 120.10037 * 0.59570 * 16 15 14 18 18 O 1.35568 * 119.90135 * 179.69719 * 17 16 15 19 19 C 1.34783 * 117.00384 * 174.34118 * 18 17 16 20 20 H 1.07998 * 119.99670 * 5.05793 * 19 18 17 21 21 C 1.38716 * 120.00269 * 185.06483 * 19 18 17 22 22 N 1.31506 * 119.99983 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00035 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47205 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46956 * 119.99663 * 23 21 19 26 26 H 1.48496 * 109.47022 * 239.99665 * 23 21 19 27 27 C 1.39174 * 120.20527 * 359.67775 * 17 16 15 28 28 C 1.37605 * 120.09900 * 0.02562 * 27 17 16 29 29 H 1.08996 * 109.47216 * 60.00093 * 1 2 3 30 30 H 1.09004 * 109.47022 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46898 * 299.99968 * 1 2 3 32 32 H 1.09001 * 109.47125 * 300.00033 * 3 2 1 33 33 H 1.08998 * 109.46744 * 59.99825 * 3 2 1 34 34 H 1.09005 * 109.47383 * 299.99682 * 4 3 2 35 35 H 1.08993 * 109.47527 * 59.99686 * 4 3 2 36 36 H 1.08999 * 109.46665 * 174.99497 * 7 5 4 37 37 H 1.09000 * 109.47153 * 294.99428 * 7 5 4 38 38 H 0.96697 * 114.00076 * 179.97438 * 8 7 5 39 39 H 0.97004 * 119.99846 * 334.99944 * 9 5 4 40 40 H 1.07993 * 120.00075 * 353.20705 * 12 10 9 41 41 H 1.08002 * 119.99999 * 168.68232 * 13 12 10 42 42 H 1.07999 * 120.05599 * 359.97438 * 15 14 13 43 43 H 1.07999 * 119.95475 * 180.27376 * 16 15 14 44 44 H 0.97005 * 120.00037 * 180.02562 * 22 21 19 45 45 H 1.07994 * 119.95887 * 179.97438 * 27 17 16 46 46 H 1.08002 * 120.05290 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1578 2.5823 0.0000 6 1 3.7675 3.1534 0.8423 7 6 5.6781 2.4635 0.1251 8 8 6.1770 1.6181 -0.9133 9 7 3.8228 3.2666 -1.2513 10 6 3.8023 4.6133 -1.2983 11 8 4.0617 5.2611 -0.3009 12 6 3.4672 5.2964 -2.5473 13 6 3.3121 6.6377 -2.5627 14 6 3.2320 7.3827 -1.2984 15 6 2.4526 6.8931 -0.2432 16 6 2.3855 7.5908 0.9409 17 6 3.0808 8.7877 1.0862 18 8 3.0068 9.4749 2.2525 19 6 3.7934 10.5628 2.3727 20 1 4.3826 10.8986 1.5322 21 6 3.8464 11.2509 3.5760 22 7 3.1287 10.8422 4.5993 23 14 4.9372 12.7582 3.7427 24 1 5.6370 13.0075 2.4569 25 1 4.1030 13.9369 4.0895 26 1 5.9389 12.5282 4.8145 27 6 3.8521 9.2811 0.0381 28 6 3.9301 8.5870 -1.1475 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 3.8575 0.6435 0.8892 35 1 3.8568 0.6438 -0.8907 36 1 6.1283 3.4523 0.0364 37 1 5.9305 2.0351 1.0952 38 1 7.1363 1.4978 -0.8958 39 1 3.6157 2.7503 -2.0460 40 1 3.3440 4.7281 -3.4573 41 1 3.2470 7.1630 -3.5041 42 1 1.9086 5.9671 -0.3568 43 1 1.7882 7.2119 1.7570 44 1 3.1654 11.3236 5.4406 45 1 4.3897 10.2104 0.1550 46 1 4.5292 8.9704 -1.9603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492589008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:59 Heat of formation + Delta-G solvation = -107.629801 kcal Electronic energy + Delta-G solvation = -28515.469201 eV Core-core repulsion = 24372.055538 eV Total energy + Delta-G solvation = -4143.413664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.99828 -38.88091 -38.20163 -37.35376 -36.37394 -34.91474 -33.04626 -32.19818 -31.70609 -30.12323 -28.83728 -27.79977 -26.46024 -25.44866 -23.79737 -23.03002 -21.81862 -21.24735 -20.56986 -19.28381 -17.93323 -17.71119 -17.18311 -16.66764 -16.65926 -16.28919 -15.91653 -15.24213 -14.92017 -14.70523 -14.58060 -14.26861 -14.05457 -13.83150 -13.77762 -13.47109 -13.32380 -13.09143 -12.87139 -12.54411 -12.47220 -12.17984 -12.01343 -11.70164 -11.58736 -11.35003 -11.32463 -11.22388 -11.01229 -10.69012 -10.60616 -10.40970 -10.20717 -9.92213 -9.48738 -9.40586 -9.16221 -8.96519 -8.70024 -7.92124 -6.86464 -6.46427 -4.02126 1.24969 2.42082 2.69939 3.12940 3.14354 3.19413 3.30717 3.43143 3.62507 3.96539 4.12512 4.69346 4.71074 4.77147 4.80543 5.04406 5.08611 5.09178 5.13513 5.20243 5.24310 5.26191 5.28161 5.35156 5.39447 5.46471 5.61928 5.65235 5.73588 5.75261 5.84431 5.97510 6.24946 6.33484 6.44556 6.56441 6.60273 6.78701 6.88444 7.03318 7.12481 7.36074 7.40695 7.45180 7.50114 7.70369 7.91954 8.00521 8.54885 8.99491 9.71517 10.71535 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.002510 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.729119 B =11154.007552 C =11522.621954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.059 3.941 4 C -0.118 4.118 5 C 0.154 3.846 6 H 0.103 0.897 7 C 0.064 3.936 8 O -0.570 6.570 9 N -0.725 5.725 10 C 0.540 3.460 11 O -0.514 6.514 12 C -0.266 4.266 13 C 0.026 3.974 14 C -0.188 4.188 15 C 0.013 3.987 16 C -0.203 4.203 17 C 0.171 3.829 18 O -0.173 6.173 19 C -0.389 4.389 20 H 0.094 0.906 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.251 4.251 28 C -0.042 4.042 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.377 0.623 39 H 0.398 0.602 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.270 0.730 45 H 0.126 0.874 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 -18.128 -12.955 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.017 4.017 4 C -0.156 4.156 5 C 0.048 3.952 6 H 0.121 0.879 7 C -0.015 4.015 8 O -0.375 6.375 9 N -0.378 5.378 10 C 0.330 3.670 11 O -0.391 6.391 12 C -0.287 4.287 13 C 0.007 3.993 14 C -0.189 4.189 15 C -0.005 4.005 16 C -0.223 4.223 17 C 0.117 3.883 18 O -0.076 6.076 19 C -0.465 4.465 20 H 0.112 0.888 21 C -0.166 4.166 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.270 4.270 28 C -0.060 4.060 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.224 0.776 39 H 0.232 0.768 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.118 0.882 43 H 0.131 0.869 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.086 -17.794 -11.892 21.402 hybrid contribution 0.958 0.694 -0.187 1.198 sum 0.872 -17.100 -12.078 20.954 Atomic orbital electron populations 1.22737 0.80952 1.02632 1.00183 1.87844 1.19785 1.28205 1.95490 1.22583 0.93943 0.84468 1.00738 1.21659 0.92939 0.96315 1.04722 1.20901 0.92651 0.92596 0.89004 0.87917 1.22631 0.94670 0.94140 0.90019 1.86433 1.26988 1.70531 1.53586 1.46004 1.72333 1.06580 1.12910 1.18518 0.77614 0.81522 0.89371 1.90995 1.47798 1.64369 1.35932 1.22600 1.13224 0.95722 0.97187 1.22335 0.86947 0.93080 0.96956 1.18287 1.07639 0.98015 0.94995 1.20420 0.94365 0.94720 0.91036 1.19996 1.07460 0.96009 0.98788 1.19521 0.91898 0.90424 0.86503 1.83904 1.56351 1.37119 1.30202 1.21441 1.23103 1.02857 0.99138 0.88848 1.25324 0.97707 0.99318 0.94237 1.70032 1.37890 1.39205 1.02323 0.85635 0.79093 0.79759 0.78881 1.19041 1.20109 1.20114 1.20953 1.07854 1.03576 0.94606 1.20747 0.96249 0.92730 0.96288 0.94042 0.89699 0.93957 0.93019 0.93070 0.89872 0.89741 0.92523 0.92883 0.77636 0.76839 0.86202 0.86138 0.88171 0.86903 0.92013 0.85675 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.16 10.70 -35.23 -0.38 -4.54 16 3 C 0.06 0.57 5.83 37.15 0.22 0.79 16 4 C -0.12 -1.10 4.84 -26.73 -0.13 -1.23 16 5 C 0.15 1.65 2.37 -67.93 -0.16 1.49 16 6 H 0.10 1.28 7.58 -51.93 -0.39 0.89 16 7 C 0.06 0.66 6.85 37.16 0.25 0.92 16 8 O -0.57 -5.28 12.83 -35.23 -0.45 -5.73 16 9 N -0.73 -8.00 4.47 -55.25 -0.25 -8.25 16 10 C 0.54 7.72 6.74 -13.04 -0.09 7.64 16 11 O -0.51 -9.60 11.84 5.17 0.06 -9.54 16 12 C -0.27 -3.34 9.90 -37.50 -0.37 -3.71 16 13 C 0.03 0.37 9.80 -37.19 -0.36 0.00 16 14 C -0.19 -3.44 4.54 -105.03 -0.48 -3.92 16 15 C 0.01 0.26 6.59 -39.15 -0.26 0.00 16 16 C -0.20 -4.62 9.97 -39.47 -0.39 -5.01 16 17 C 0.17 4.34 6.66 -38.89 -0.26 4.08 16 18 O -0.17 -5.08 9.74 0.74 0.01 -5.07 16 19 C -0.39 -11.07 9.48 30.91 0.29 -10.78 16 20 H 0.09 2.47 5.18 -52.49 -0.27 2.20 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 23 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 27 C -0.25 -5.70 9.14 -39.46 -0.36 -6.06 16 28 C -0.04 -0.81 9.78 -39.14 -0.38 -1.19 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.48 7.75 -51.93 -0.40 0.08 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.82 7.73 -51.93 -0.40 0.41 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.38 2.06 9.12 45.56 0.42 2.47 16 39 H 0.40 3.57 8.58 -40.82 -0.35 3.22 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.10 1.78 7.02 -52.49 -0.37 1.42 16 43 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.13 2.83 5.62 -52.49 -0.29 2.53 16 46 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -34.75 389.24 -6.72 -41.47 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.85 Total: 9.44 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.46 Total: -14.64 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.51 Total: -32.94 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.76 Total: -24.88 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.75 -6.72 -41.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492589008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.160 kcal (2) G-P(sol) polarization free energy of solvation -34.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds