Wall clock time and date at job start Tue Mar 31 2020 19:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00258 * 2 1 4 4 C 1.52995 * 109.47179 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46969 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47369 * 55.00312 * 5 4 3 7 7 C 1.53009 * 109.46815 * 174.99770 * 5 4 3 8 8 O 1.42899 * 109.47286 * 54.99845 * 7 5 4 9 9 N 1.46498 * 109.47090 * 294.99672 * 5 4 3 10 10 C 1.34770 * 120.00106 * 155.00328 * 9 5 4 11 11 O 1.21726 * 119.99829 * 359.97438 * 10 9 5 12 12 C 1.46253 * 120.00035 * 180.02562 * 10 9 5 13 13 C 1.35032 * 120.00019 * 173.21134 * 12 10 9 14 14 C 1.46963 * 119.99830 * 348.68314 * 13 12 10 15 15 C 1.40021 * 120.09815 * 316.40718 * 14 13 12 16 16 C 1.37598 * 119.89557 * 179.70006 * 15 14 13 17 17 C 1.39177 * 120.10037 * 0.59570 * 16 15 14 18 18 O 1.35568 * 119.90135 * 179.69719 * 17 16 15 19 19 C 1.34783 * 117.00384 * 174.34118 * 18 17 16 20 20 H 1.07998 * 119.99670 * 5.05793 * 19 18 17 21 21 C 1.38716 * 120.00269 * 185.06483 * 19 18 17 22 22 N 1.31506 * 119.99983 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00035 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47205 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46956 * 119.99663 * 23 21 19 26 26 H 1.48496 * 109.47022 * 239.99665 * 23 21 19 27 27 C 1.39174 * 120.20527 * 359.67775 * 17 16 15 28 28 C 1.37605 * 120.09900 * 0.02562 * 27 17 16 29 29 H 1.08996 * 109.47216 * 60.00093 * 1 2 3 30 30 H 1.09004 * 109.47022 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46898 * 299.99968 * 1 2 3 32 32 H 1.09001 * 109.47125 * 300.00033 * 3 2 1 33 33 H 1.08998 * 109.46744 * 59.99825 * 3 2 1 34 34 H 1.09005 * 109.47383 * 299.99682 * 4 3 2 35 35 H 1.08993 * 109.47527 * 59.99686 * 4 3 2 36 36 H 1.08999 * 109.46665 * 174.99497 * 7 5 4 37 37 H 1.09000 * 109.47153 * 294.99428 * 7 5 4 38 38 H 0.96697 * 114.00076 * 179.97438 * 8 7 5 39 39 H 0.97004 * 119.99846 * 334.99944 * 9 5 4 40 40 H 1.07993 * 120.00075 * 353.20705 * 12 10 9 41 41 H 1.08002 * 119.99999 * 168.68232 * 13 12 10 42 42 H 1.07999 * 120.05599 * 359.97438 * 15 14 13 43 43 H 1.07999 * 119.95475 * 180.27376 * 16 15 14 44 44 H 0.97005 * 120.00037 * 180.02562 * 22 21 19 45 45 H 1.07994 * 119.95887 * 179.97438 * 27 17 16 46 46 H 1.08002 * 120.05290 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1578 2.5823 0.0000 6 1 3.7675 3.1534 0.8423 7 6 5.6781 2.4635 0.1251 8 8 6.1770 1.6181 -0.9133 9 7 3.8228 3.2666 -1.2513 10 6 3.8023 4.6133 -1.2983 11 8 4.0617 5.2611 -0.3009 12 6 3.4672 5.2964 -2.5473 13 6 3.3121 6.6377 -2.5627 14 6 3.2320 7.3827 -1.2984 15 6 2.4526 6.8931 -0.2432 16 6 2.3855 7.5908 0.9409 17 6 3.0808 8.7877 1.0862 18 8 3.0068 9.4749 2.2525 19 6 3.7934 10.5628 2.3727 20 1 4.3826 10.8986 1.5322 21 6 3.8464 11.2509 3.5760 22 7 3.1287 10.8422 4.5993 23 14 4.9372 12.7582 3.7427 24 1 5.6370 13.0075 2.4569 25 1 4.1030 13.9369 4.0895 26 1 5.9389 12.5282 4.8145 27 6 3.8521 9.2811 0.0381 28 6 3.9301 8.5870 -1.1475 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 3.8575 0.6435 0.8892 35 1 3.8568 0.6438 -0.8907 36 1 6.1283 3.4523 0.0364 37 1 5.9305 2.0351 1.0952 38 1 7.1363 1.4978 -0.8958 39 1 3.6157 2.7503 -2.0460 40 1 3.3440 4.7281 -3.4573 41 1 3.2470 7.1630 -3.5041 42 1 1.9086 5.9671 -0.3568 43 1 1.7882 7.2119 1.7570 44 1 3.1654 11.3236 5.4406 45 1 4.3897 10.2104 0.1550 46 1 4.5292 8.9704 -1.9603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492589008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:59 Heat of formation + Delta-G solvation = -134.817178 kcal Electronic energy + Delta-G solvation = -28516.648135 eV Core-core repulsion = 24372.055538 eV Total energy + Delta-G solvation = -4144.592597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21295 -40.51736 -39.15099 -38.39693 -37.79656 -35.86973 -34.58337 -33.93441 -32.72187 -31.81259 -29.88502 -29.12046 -27.41519 -27.13337 -24.94887 -23.99900 -23.49323 -22.65677 -21.56735 -20.55875 -19.75001 -18.88908 -18.52902 -17.96831 -17.47638 -17.17637 -16.74734 -16.39636 -16.33806 -16.08200 -16.03021 -15.59933 -15.45409 -15.29968 -14.83885 -14.64357 -14.57186 -14.49925 -14.22209 -13.88159 -13.68189 -13.55965 -13.30663 -13.02900 -12.74730 -12.65287 -12.34512 -12.29441 -12.22324 -12.13131 -12.09468 -11.99752 -11.23093 -11.04877 -10.92587 -10.66808 -10.62337 -10.37595 -10.02573 -9.54456 -8.54749 -8.48465 -6.15697 0.00462 0.72563 1.13426 1.33346 1.44456 1.52519 2.16680 2.33398 2.49850 2.71164 2.87290 3.21500 3.37226 3.53124 3.90291 3.93278 4.02663 4.03876 4.09771 4.17217 4.19649 4.32939 4.42089 4.47506 4.50377 4.52939 4.55638 4.60331 4.65492 4.77348 4.79412 4.84589 4.96257 5.06207 5.10486 5.16307 5.26923 5.28254 5.46882 5.58859 5.69051 5.73430 5.85872 6.02819 6.17572 6.25779 6.73052 6.83564 6.95546 7.46274 7.77921 8.74740 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.002510 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.729119 B =11154.007552 C =11522.621954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.060 3.940 4 C -0.105 4.105 5 C 0.152 3.848 6 H 0.081 0.919 7 C 0.072 3.928 8 O -0.574 6.574 9 N -0.706 5.706 10 C 0.528 3.472 11 O -0.566 6.566 12 C -0.232 4.232 13 C 0.005 3.995 14 C -0.159 4.159 15 C 0.016 3.984 16 C -0.220 4.220 17 C 0.127 3.873 18 O -0.231 6.231 19 C -0.414 4.414 20 H 0.102 0.898 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.021 2.979 24 H -0.251 1.251 25 H -0.266 1.266 26 H -0.268 1.268 27 C -0.259 4.259 28 C -0.048 4.048 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.031 0.969 37 H 0.066 0.934 38 H 0.395 0.605 39 H 0.413 0.587 40 H 0.170 0.830 41 H 0.167 0.833 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.273 0.727 45 H 0.119 0.881 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 -20.028 -17.229 26.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.017 4.017 4 C -0.143 4.143 5 C 0.047 3.953 6 H 0.099 0.901 7 C -0.008 4.008 8 O -0.382 6.382 9 N -0.359 5.359 10 C 0.319 3.681 11 O -0.446 6.446 12 C -0.252 4.252 13 C -0.015 4.015 14 C -0.160 4.160 15 C -0.002 4.002 16 C -0.240 4.240 17 C 0.077 3.923 18 O -0.138 6.138 19 C -0.490 4.490 20 H 0.119 0.881 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.840 3.160 24 H -0.174 1.174 25 H -0.190 1.190 26 H -0.194 1.194 27 C -0.278 4.278 28 C -0.066 4.066 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.244 0.756 39 H 0.249 0.751 40 H 0.187 0.813 41 H 0.184 0.816 42 H 0.138 0.862 43 H 0.119 0.881 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.882 -19.782 -16.255 25.619 hybrid contribution 0.633 0.784 0.780 1.274 sum 1.515 -18.998 -15.475 24.550 Atomic orbital electron populations 1.22920 0.79659 1.03873 1.00667 1.87813 1.21286 1.28462 1.95583 1.22573 0.94082 0.84389 1.00644 1.21524 0.92655 0.95074 1.05033 1.20889 0.93265 0.93032 0.88162 0.90138 1.22436 0.94001 0.93214 0.91113 1.86380 1.28818 1.69932 1.53073 1.45872 1.70568 1.05826 1.13590 1.19059 0.77117 0.82360 0.89546 1.91006 1.50138 1.65587 1.37868 1.23053 1.09057 0.95340 0.97747 1.22559 0.89202 0.93482 0.96208 1.18856 1.03910 0.97030 0.96182 1.20655 0.94483 0.94746 0.90310 1.20177 1.07674 0.95967 1.00156 1.20005 0.94080 0.91638 0.86616 1.83873 1.58694 1.38675 1.32518 1.21913 1.23730 1.03337 1.00001 0.88062 1.26657 0.99232 1.02838 0.93421 1.70180 1.40822 1.41677 1.03223 0.84502 0.76960 0.75086 0.79447 1.17409 1.19039 1.19350 1.21081 1.07497 1.03855 0.95411 1.21174 0.96530 0.92971 0.95944 0.93108 0.88194 0.93918 0.92365 0.93934 0.89581 0.89325 0.95064 0.91559 0.75572 0.75066 0.81261 0.81558 0.86213 0.88081 0.91779 0.86360 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.96 10.70 -148.98 -1.59 -9.56 16 3 C 0.06 1.05 5.83 71.98 0.42 1.47 16 4 C -0.11 -1.75 4.84 30.59 0.15 -1.60 16 5 C 0.15 3.05 2.37 45.00 0.11 3.16 16 6 H 0.08 2.03 7.58 -2.39 -0.02 2.01 16 7 C 0.07 1.37 6.85 71.99 0.49 1.87 16 8 O -0.57 -9.09 12.83 -148.98 -1.91 -11.00 16 9 N -0.71 -13.44 4.47 -446.91 -2.00 -15.43 16 10 C 0.53 13.49 6.74 86.33 0.58 14.07 16 11 O -0.57 -20.53 11.84 -4.43 -0.05 -20.58 16 12 C -0.23 -4.48 9.90 23.62 0.23 -4.24 16 13 C 0.00 0.11 9.80 23.82 0.23 0.34 16 14 C -0.16 -5.42 4.54 -20.13 -0.09 -5.51 16 15 C 0.02 0.64 6.59 22.55 0.15 0.78 16 16 C -0.22 -10.60 9.97 22.34 0.22 -10.38 16 17 C 0.13 6.89 6.66 22.72 0.15 7.04 16 18 O -0.23 -14.75 9.74 -20.26 -0.20 -14.95 16 19 C -0.41 -25.18 9.48 67.93 0.64 -24.53 16 20 H 0.10 5.68 5.18 -2.91 -0.02 5.67 16 21 C -0.02 -1.42 5.49 84.86 0.47 -0.95 16 22 N -0.92 -58.26 13.67 21.62 0.30 -57.97 16 23 Si 1.02 44.15 29.55 68.60 2.03 46.17 16 24 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 C -0.26 -12.16 9.14 22.35 0.20 -11.95 16 28 C -0.05 -1.79 9.78 22.55 0.22 -1.57 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.93 7.75 -2.39 -0.02 0.91 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.09 1.45 7.73 -2.39 -0.02 1.43 16 36 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.39 3.25 9.12 -74.06 -0.68 2.58 16 39 H 0.41 5.58 8.58 -92.71 -0.80 4.79 16 40 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.12 4.11 7.02 -2.91 -0.02 4.09 16 43 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 44 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 45 H 0.12 5.58 5.62 -2.91 -0.02 5.56 16 46 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -83.93 389.24 1.54 -82.38 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: -0.46 Total: 31.35 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 5.43 Total: -30.41 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -1.70 Total: -73.40 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -3.76 Total: -56.09 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -83.93 1.54 -82.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492589008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.434 kcal (2) G-P(sol) polarization free energy of solvation -83.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds