Wall clock time and date at job start Tue Mar 31 2020 18:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46492 * 119.99819 * 2 1 4 4 C 1.53006 * 109.47057 * 270.00036 * 3 2 1 5 5 O 1.42895 * 109.47430 * 64.99950 * 4 3 2 6 6 C 1.42892 * 114.00239 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47346 * 180.02562 * 6 5 4 8 8 O 1.42906 * 109.47209 * 64.99769 * 7 6 5 9 9 C 1.34776 * 119.99723 * 179.97438 * 2 1 3 10 10 O 1.21727 * 119.99965 * 179.97438 * 9 2 1 11 11 C 1.46257 * 120.00207 * 359.97438 * 9 2 1 12 12 C 1.35029 * 119.99770 * 173.17572 * 11 9 2 13 13 C 1.46956 * 119.99992 * 348.51286 * 12 11 9 14 14 C 1.40025 * 120.10103 * 316.61180 * 13 12 11 15 15 C 1.37606 * 119.89738 * 179.79192 * 14 13 12 16 16 C 1.39178 * 120.09874 * 0.48570 * 15 14 13 17 17 O 1.35572 * 119.89634 * 179.76708 * 16 15 14 18 18 C 1.34789 * 116.99715 * 174.34320 * 17 16 15 19 19 H 1.07998 * 120.00152 * 5.06028 * 18 17 16 20 20 C 1.38715 * 119.99665 * 185.05865 * 18 17 16 21 21 N 1.31510 * 120.00324 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46931 * 89.99914 * 22 20 18 24 24 H 1.48495 * 109.46763 * 209.99951 * 22 20 18 25 25 H 1.48498 * 109.46739 * 329.99713 * 22 20 18 26 26 C 1.39174 * 120.20452 * 359.74124 * 16 15 14 27 27 C 1.37603 * 120.10270 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47057 * 269.99779 * 1 2 3 29 29 H 1.08995 * 109.47501 * 29.99844 * 1 2 3 30 30 H 1.09005 * 109.47211 * 150.00160 * 1 2 3 31 31 H 1.08994 * 109.47471 * 30.00059 * 3 2 1 32 32 H 1.09005 * 109.47021 * 150.00148 * 3 2 1 33 33 H 1.08996 * 109.46813 * 185.00516 * 4 3 2 34 34 H 1.09005 * 109.46934 * 304.99912 * 4 3 2 35 35 H 1.08995 * 109.47171 * 300.00069 * 6 5 4 36 36 H 1.08997 * 109.47298 * 59.99891 * 6 5 4 37 37 H 1.08993 * 109.47572 * 185.00004 * 7 6 5 38 38 H 1.09002 * 109.46838 * 304.99984 * 7 6 5 39 39 H 0.96694 * 114.00176 * 180.02562 * 8 7 6 40 40 H 1.07995 * 119.99853 * 352.90062 * 11 9 2 41 41 H 1.07990 * 119.99750 * 168.51151 * 12 11 9 42 42 H 1.07994 * 120.05374 * 359.97438 * 14 13 12 43 43 H 1.07997 * 119.94939 * 180.23385 * 15 14 13 44 44 H 0.96997 * 120.00430 * 179.97438 * 21 20 18 45 45 H 1.07999 * 119.95033 * 180.02562 * 26 16 15 46 46 H 1.07995 * 120.05421 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 8 1.2060 1.9935 -2.0815 6 6 1.3323 2.4163 -3.4405 7 6 -0.0566 2.6906 -4.0206 8 8 -0.6498 3.7950 -3.3346 9 6 2.1388 -1.1672 0.0005 10 8 3.3561 -1.1673 0.0001 11 6 1.4075 -2.4338 0.0017 12 6 2.0755 -3.5991 -0.1368 13 6 3.4890 -3.5926 -0.5387 14 6 3.9233 -2.7452 -1.5653 15 6 5.2486 -2.7393 -1.9354 16 6 6.1550 -3.5813 -1.2978 17 8 7.4589 -3.5756 -1.6689 18 6 8.3067 -4.3255 -0.9369 19 1 7.9254 -4.9587 -0.1495 20 6 9.6690 -4.2839 -1.1951 21 7 10.1333 -3.5134 -2.1543 22 14 10.8439 -5.3237 -0.1812 23 1 11.0140 -6.6502 -0.8267 24 1 12.1604 -4.6421 -0.0960 25 1 10.2911 -5.5052 1.1851 26 6 5.7271 -4.4288 -0.2801 27 6 4.4046 -4.4380 0.0999 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 3.0732 2.6063 -1.4438 34 1 2.9642 0.9130 -1.9816 35 1 1.9299 3.3268 -3.4837 36 1 1.8206 1.6334 -4.0208 37 1 0.0325 2.9269 -5.0808 38 1 -0.6830 1.8072 -3.8967 39 1 -1.5341 4.0254 -3.6506 40 1 0.3338 -2.4373 0.1177 41 1 1.5709 -4.5359 0.0479 42 1 3.2197 -2.0950 -2.0639 43 1 5.5852 -2.0833 -2.7245 44 1 11.0859 -3.4840 -2.3346 45 1 6.4340 -5.0802 0.2121 46 1 4.0732 -5.0961 0.8894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492768868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:57 Heat of formation + Delta-G solvation = -93.441872 kcal Electronic energy + Delta-G solvation = -28586.136743 eV Core-core repulsion = 24443.338314 eV Total energy + Delta-G solvation = -4142.798429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.93980 -38.81841 -38.30128 -36.86986 -36.41801 -35.12430 -33.10743 -32.14774 -30.95109 -30.10435 -29.11165 -27.89583 -26.35921 -25.42866 -23.95432 -22.73334 -22.08143 -21.67964 -20.42191 -18.42367 -17.97747 -17.87008 -17.38701 -16.81566 -16.64635 -16.29925 -15.68069 -15.12136 -14.81152 -14.60328 -14.46684 -14.40711 -14.07408 -13.78837 -13.46489 -13.27629 -13.18046 -12.87870 -12.83062 -12.52604 -12.44082 -12.21598 -12.06514 -11.98524 -11.68828 -11.67984 -11.30948 -11.13700 -10.98753 -10.62730 -10.59942 -10.41161 -10.39690 -9.78640 -9.43824 -9.34095 -9.12869 -8.68363 -8.54322 -7.88838 -6.83905 -6.44547 -4.00305 1.27520 2.43852 2.72417 3.14340 3.15875 3.17290 3.20196 3.46471 3.68834 3.91191 3.98292 4.71202 4.75827 4.83154 4.86300 4.98144 5.11408 5.13315 5.15875 5.18342 5.28073 5.28973 5.31379 5.37234 5.47316 5.49390 5.59550 5.67680 5.75507 5.77924 5.82100 5.87543 6.26088 6.33765 6.45585 6.59350 6.67755 6.81415 7.00865 7.05818 7.14120 7.27636 7.37998 7.47092 7.51939 7.61523 7.94092 8.02314 8.55654 9.01280 9.73374 10.73418 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.002506 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.425211 B =11168.548055 C =12299.024397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.616 5.616 3 C 0.123 3.877 4 C 0.045 3.955 5 O -0.378 6.378 6 C 0.061 3.939 7 C 0.079 3.921 8 O -0.567 6.567 9 C 0.539 3.461 10 O -0.514 6.514 11 C -0.266 4.266 12 C 0.025 3.975 13 C -0.187 4.187 14 C 0.013 3.987 15 C -0.203 4.203 16 C 0.171 3.829 17 O -0.174 6.174 18 C -0.389 4.389 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.250 4.250 27 C -0.042 4.042 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.377 0.623 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.270 0.730 45 H 0.126 0.874 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.541 8.766 0.134 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.351 5.351 3 C 0.000 4.000 4 C -0.033 4.033 5 O -0.298 6.298 6 C -0.016 4.016 7 C 0.001 3.999 8 O -0.372 6.372 9 C 0.331 3.669 10 O -0.390 6.390 11 C -0.287 4.287 12 C 0.005 3.995 13 C -0.188 4.188 14 C -0.005 4.005 15 C -0.222 4.222 16 C 0.116 3.884 17 O -0.076 6.076 18 C -0.465 4.465 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.270 4.270 27 C -0.060 4.060 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.224 0.776 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.117 0.883 43 H 0.130 0.870 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.111 8.914 0.271 22.917 hybrid contribution 0.133 -0.393 0.063 0.420 sum -20.978 8.521 0.334 22.645 Atomic orbital electron populations 1.21744 0.79769 1.03370 1.00906 1.47726 1.06845 1.05550 1.74939 1.21397 0.98780 0.85259 0.94558 1.23016 0.86103 0.99525 0.94627 1.87888 1.29686 1.87618 1.24565 1.22503 0.96137 0.98890 0.84077 1.22192 0.93866 0.89310 0.94484 1.86567 1.35541 1.51409 1.63674 1.18553 0.87644 0.84110 0.76577 1.90982 1.13013 1.86652 1.48371 1.22698 0.99428 0.92442 1.14102 1.22348 0.93300 0.96518 0.87312 1.18295 0.92498 1.04652 1.03386 1.20417 0.93949 0.92458 0.93722 1.19986 0.92454 1.04087 1.05705 1.19517 0.85529 0.91974 0.91343 1.83907 1.12705 1.60848 1.50135 1.21392 0.86988 1.22412 1.15755 0.88900 1.25321 0.96556 0.97529 0.97175 1.70021 1.14607 1.36184 1.28733 0.85700 0.79144 0.79059 0.79480 1.19849 1.20238 1.19132 1.20951 0.96354 1.05935 1.03727 1.20745 0.92716 0.95709 0.96848 0.93476 0.90496 0.91286 0.90180 0.88263 0.92555 0.92504 0.92744 0.91881 0.92292 0.92782 0.77638 0.85972 0.86138 0.88261 0.86962 0.91981 0.85667 0.87619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 9.92 59.85 0.59 1.38 16 2 N -0.62 -7.74 2.84 -183.29 -0.52 -8.26 16 3 C 0.12 1.47 5.81 -4.04 -0.02 1.44 16 4 C 0.04 0.53 6.28 37.16 0.23 0.77 16 5 O -0.38 -4.41 9.13 -40.08 -0.37 -4.77 16 6 C 0.06 0.58 6.32 37.16 0.23 0.82 16 7 C 0.08 0.60 7.43 37.16 0.28 0.88 16 8 O -0.57 -4.86 13.63 -40.08 -0.55 -5.41 16 9 C 0.54 8.38 6.63 -13.04 -0.09 8.30 16 10 O -0.51 -10.13 11.76 5.16 0.06 -10.07 16 11 C -0.27 -3.55 9.02 -37.50 -0.34 -3.88 16 12 C 0.02 0.36 9.80 -37.19 -0.36 -0.01 16 13 C -0.19 -3.52 4.54 -105.03 -0.48 -4.00 16 14 C 0.01 0.27 6.60 -39.14 -0.26 0.01 16 15 C -0.20 -4.69 9.97 -39.46 -0.39 -5.09 16 16 C 0.17 4.39 6.66 -38.89 -0.26 4.13 16 17 O -0.17 -5.13 9.74 0.71 0.01 -5.12 16 18 C -0.39 -11.17 9.48 30.91 0.29 -10.87 16 19 H 0.09 2.47 5.18 -52.49 -0.27 2.20 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 22 Si 0.94 20.88 29.55 -169.99 -5.02 15.85 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 C -0.25 -5.77 9.14 -39.47 -0.36 -6.13 16 27 C -0.04 -0.82 9.78 -39.14 -0.38 -1.21 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.71 7.11 -51.93 -0.37 0.34 16 30 H 0.07 0.57 6.20 -51.93 -0.32 0.25 16 31 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.10 1.31 7.42 -51.93 -0.39 0.93 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.38 1.39 9.12 45.56 0.42 1.80 16 40 H 0.12 1.22 6.34 -52.49 -0.33 0.89 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.10 1.85 7.01 -52.49 -0.37 1.48 16 43 H 0.11 2.53 8.06 -52.49 -0.42 2.10 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.13 2.86 5.62 -52.49 -0.29 2.56 16 46 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 386.08 15.07 5.82 5.82 Total: -1.00 -36.01 386.08 -6.93 -42.94 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.71 Total: 6.41 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -1.41 Total: -12.48 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.24 Total: -33.16 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.84 Total: -25.38 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.01 -6.93 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492768868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.503 kcal (2) G-P(sol) polarization free energy of solvation -36.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds