Wall clock time and date at job start Tue Mar 31 2020 18:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46492 * 119.99819 * 2 1 4 4 C 1.53006 * 109.47057 * 270.00036 * 3 2 1 5 5 O 1.42895 * 109.47430 * 64.99950 * 4 3 2 6 6 C 1.42892 * 114.00239 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47346 * 180.02562 * 6 5 4 8 8 O 1.42906 * 109.47209 * 64.99769 * 7 6 5 9 9 C 1.34776 * 119.99723 * 179.97438 * 2 1 3 10 10 O 1.21727 * 119.99965 * 179.97438 * 9 2 1 11 11 C 1.46257 * 120.00207 * 359.97438 * 9 2 1 12 12 C 1.35029 * 119.99770 * 173.17572 * 11 9 2 13 13 C 1.46956 * 119.99992 * 348.51286 * 12 11 9 14 14 C 1.40025 * 120.10103 * 316.61180 * 13 12 11 15 15 C 1.37606 * 119.89738 * 179.79192 * 14 13 12 16 16 C 1.39178 * 120.09874 * 0.48570 * 15 14 13 17 17 O 1.35572 * 119.89634 * 179.76708 * 16 15 14 18 18 C 1.34789 * 116.99715 * 174.34320 * 17 16 15 19 19 H 1.07998 * 120.00152 * 5.06028 * 18 17 16 20 20 C 1.38715 * 119.99665 * 185.05865 * 18 17 16 21 21 N 1.31510 * 120.00324 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46931 * 89.99914 * 22 20 18 24 24 H 1.48495 * 109.46763 * 209.99951 * 22 20 18 25 25 H 1.48498 * 109.46739 * 329.99713 * 22 20 18 26 26 C 1.39174 * 120.20452 * 359.74124 * 16 15 14 27 27 C 1.37603 * 120.10270 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47057 * 269.99779 * 1 2 3 29 29 H 1.08995 * 109.47501 * 29.99844 * 1 2 3 30 30 H 1.09005 * 109.47211 * 150.00160 * 1 2 3 31 31 H 1.08994 * 109.47471 * 30.00059 * 3 2 1 32 32 H 1.09005 * 109.47021 * 150.00148 * 3 2 1 33 33 H 1.08996 * 109.46813 * 185.00516 * 4 3 2 34 34 H 1.09005 * 109.46934 * 304.99912 * 4 3 2 35 35 H 1.08995 * 109.47171 * 300.00069 * 6 5 4 36 36 H 1.08997 * 109.47298 * 59.99891 * 6 5 4 37 37 H 1.08993 * 109.47572 * 185.00004 * 7 6 5 38 38 H 1.09002 * 109.46838 * 304.99984 * 7 6 5 39 39 H 0.96694 * 114.00176 * 180.02562 * 8 7 6 40 40 H 1.07995 * 119.99853 * 352.90062 * 11 9 2 41 41 H 1.07990 * 119.99750 * 168.51151 * 12 11 9 42 42 H 1.07994 * 120.05374 * 359.97438 * 14 13 12 43 43 H 1.07997 * 119.94939 * 180.23385 * 15 14 13 44 44 H 0.96997 * 120.00430 * 179.97438 * 21 20 18 45 45 H 1.07999 * 119.95033 * 180.02562 * 26 16 15 46 46 H 1.07995 * 120.05421 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 8 1.2060 1.9935 -2.0815 6 6 1.3323 2.4163 -3.4405 7 6 -0.0566 2.6906 -4.0206 8 8 -0.6498 3.7950 -3.3346 9 6 2.1388 -1.1672 0.0005 10 8 3.3561 -1.1673 0.0001 11 6 1.4075 -2.4338 0.0017 12 6 2.0755 -3.5991 -0.1368 13 6 3.4890 -3.5926 -0.5387 14 6 3.9233 -2.7452 -1.5653 15 6 5.2486 -2.7393 -1.9354 16 6 6.1550 -3.5813 -1.2978 17 8 7.4589 -3.5756 -1.6689 18 6 8.3067 -4.3255 -0.9369 19 1 7.9254 -4.9587 -0.1495 20 6 9.6690 -4.2839 -1.1951 21 7 10.1333 -3.5134 -2.1543 22 14 10.8439 -5.3237 -0.1812 23 1 11.0140 -6.6502 -0.8267 24 1 12.1604 -4.6421 -0.0960 25 1 10.2911 -5.5052 1.1851 26 6 5.7271 -4.4288 -0.2801 27 6 4.4046 -4.4380 0.0999 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 3.0732 2.6063 -1.4438 34 1 2.9642 0.9130 -1.9816 35 1 1.9299 3.3268 -3.4837 36 1 1.8206 1.6334 -4.0208 37 1 0.0325 2.9269 -5.0808 38 1 -0.6830 1.8072 -3.8967 39 1 -1.5341 4.0254 -3.6506 40 1 0.3338 -2.4373 0.1177 41 1 1.5709 -4.5359 0.0479 42 1 3.2197 -2.0950 -2.0639 43 1 5.5852 -2.0833 -2.7245 44 1 11.0859 -3.4840 -2.3346 45 1 6.4340 -5.0802 0.2121 46 1 4.0732 -5.0961 0.8894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492768868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:56 Heat of formation + Delta-G solvation = -120.370162 kcal Electronic energy + Delta-G solvation = -28587.304441 eV Core-core repulsion = 24443.338314 eV Total energy + Delta-G solvation = -4143.966127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22317 -40.50206 -39.23509 -38.27054 -37.38275 -36.26418 -34.63704 -33.97268 -31.90243 -31.81186 -30.03790 -29.30958 -27.48823 -27.21921 -25.16094 -23.63942 -23.41977 -23.22013 -21.80154 -19.97502 -19.44881 -18.77704 -18.60145 -18.34595 -17.58760 -17.34752 -16.74384 -16.37485 -16.24654 -16.17964 -15.70816 -15.53501 -15.44362 -15.20530 -14.96215 -14.50139 -14.45085 -14.35839 -13.94902 -13.70619 -13.61417 -13.55987 -13.36787 -13.11664 -12.99283 -12.86502 -12.63330 -12.47405 -12.34506 -12.16348 -12.10700 -11.92290 -11.24249 -10.98124 -10.94641 -10.72739 -10.54075 -10.37277 -9.75910 -9.41551 -8.55546 -8.48745 -6.16075 -0.01582 0.71157 1.12257 1.33131 1.45089 1.51795 2.16760 2.18115 2.44792 2.66897 2.86796 3.20386 3.38804 3.51939 3.82200 4.00844 4.01095 4.10857 4.15653 4.16608 4.18952 4.23447 4.34350 4.44810 4.50422 4.53851 4.54739 4.60863 4.71782 4.76362 4.78887 4.81220 4.87436 5.04776 5.05783 5.10506 5.23764 5.27940 5.42981 5.62899 5.69179 5.72457 5.85023 6.02091 6.12878 6.24632 6.55702 6.92329 6.95096 7.38165 7.77169 8.74386 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.002506 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.425211 B =11168.548055 C =12299.024397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.609 5.609 3 C 0.122 3.878 4 C 0.051 3.949 5 O -0.384 6.384 6 C 0.050 3.950 7 C 0.083 3.917 8 O -0.590 6.590 9 C 0.524 3.476 10 O -0.568 6.568 11 C -0.234 4.234 12 C 0.006 3.994 13 C -0.160 4.160 14 C 0.017 3.983 15 C -0.220 4.220 16 C 0.128 3.872 17 O -0.231 6.231 18 C -0.415 4.415 19 H 0.103 0.897 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.022 2.978 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.253 1.253 26 C -0.259 4.259 27 C -0.047 4.047 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.397 0.603 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.273 0.727 45 H 0.120 0.880 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.130 8.076 1.954 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.342 5.342 3 C -0.002 4.002 4 C -0.026 4.026 5 O -0.303 6.303 6 C -0.027 4.027 7 C 0.005 3.995 8 O -0.399 6.399 9 C 0.316 3.684 10 O -0.449 6.449 11 C -0.254 4.254 12 C -0.013 4.013 13 C -0.160 4.160 14 C -0.002 4.002 15 C -0.240 4.240 16 C 0.077 3.923 17 O -0.137 6.137 18 C -0.491 4.491 19 H 0.120 0.880 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.840 3.160 23 H -0.184 1.184 24 H -0.195 1.195 25 H -0.177 1.177 26 C -0.278 4.278 27 C -0.065 4.065 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.247 0.753 40 H 0.188 0.812 41 H 0.187 0.813 42 H 0.132 0.868 43 H 0.118 0.882 44 H 0.082 0.918 45 H 0.138 0.862 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -25.834 8.254 2.093 27.201 hybrid contribution 0.987 0.075 -0.468 1.095 sum -24.847 8.329 1.624 26.257 Atomic orbital electron populations 1.21989 0.77152 1.04391 1.02580 1.47844 1.08461 1.04909 1.72963 1.21420 0.98443 0.85760 0.94554 1.22861 0.86416 0.98975 0.94385 1.87863 1.29151 1.87656 1.25656 1.22736 0.97943 0.98782 0.83216 1.22207 0.92502 0.89464 0.95322 1.86504 1.37257 1.51689 1.64452 1.19166 0.87301 0.85741 0.76147 1.90984 1.15408 1.87517 1.50965 1.23128 1.01439 0.90545 1.10321 1.22602 0.90567 0.99182 0.88938 1.18865 0.95140 1.01355 1.00669 1.20604 0.92696 0.92709 0.94163 1.20150 0.93855 1.04129 1.05839 1.19992 0.84902 0.94007 0.93421 1.83876 1.14401 1.63189 1.52251 1.21887 0.87781 1.22985 1.16422 0.88009 1.26676 0.98112 0.98939 0.98452 1.70174 1.15120 1.39172 1.31491 0.84552 0.76194 0.77252 0.77962 1.18422 1.19503 1.17704 1.21094 0.98103 1.05453 1.03136 1.21182 0.91198 0.96502 0.97605 0.91358 0.90298 0.89550 0.87846 0.90250 0.91836 0.95130 0.93137 0.91667 0.89996 0.92113 0.75299 0.81157 0.81295 0.86765 0.88208 0.91764 0.86188 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 9.92 127.77 1.27 2.38 16 2 N -0.61 -13.58 2.84 -852.00 -2.42 -16.00 16 3 C 0.12 2.76 5.81 86.38 0.50 3.26 16 4 C 0.05 1.21 6.28 71.98 0.45 1.66 16 5 O -0.38 -8.41 9.13 -144.34 -1.32 -9.73 16 6 C 0.05 0.90 6.32 71.98 0.45 1.36 16 7 C 0.08 1.07 7.43 71.98 0.53 1.61 16 8 O -0.59 -8.86 13.63 -144.34 -1.97 -10.83 16 9 C 0.52 14.85 6.63 86.33 0.57 15.43 16 10 O -0.57 -22.13 11.76 -4.43 -0.05 -22.18 16 11 C -0.23 -4.97 9.02 23.62 0.21 -4.75 16 12 C 0.01 0.15 9.80 23.82 0.23 0.38 16 13 C -0.16 -5.63 4.54 -20.13 -0.09 -5.72 16 14 C 0.02 0.67 6.60 22.55 0.15 0.82 16 15 C -0.22 -10.86 9.97 22.35 0.22 -10.63 16 16 C 0.13 7.00 6.66 22.72 0.15 7.15 16 17 O -0.23 -14.87 9.74 -20.37 -0.20 -15.07 16 18 C -0.41 -25.43 9.48 67.93 0.64 -24.78 16 19 H 0.10 5.74 5.18 -2.91 -0.02 5.72 16 20 C -0.02 -1.45 5.49 84.86 0.47 -0.98 16 21 N -0.92 -58.71 13.67 21.62 0.30 -58.41 16 22 Si 1.02 44.43 29.55 68.60 2.03 46.46 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 25 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 26 C -0.26 -12.29 9.14 22.34 0.20 -12.08 16 27 C -0.05 -1.77 9.78 22.55 0.22 -1.55 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 1.13 7.11 -2.39 -0.02 1.11 16 30 H 0.09 0.91 6.20 -2.38 -0.01 0.89 16 31 H 0.10 1.85 8.07 -2.39 -0.02 1.84 16 32 H 0.08 2.13 7.42 -2.38 -0.02 2.12 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.40 1.99 9.12 -74.06 -0.68 1.31 16 40 H 0.17 2.06 6.34 -2.91 -0.02 2.04 16 41 H 0.17 2.53 8.06 -2.92 -0.02 2.50 16 42 H 0.11 4.20 7.01 -2.91 -0.02 4.18 16 43 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 44 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 45 H 0.12 5.69 5.62 -2.91 -0.02 5.68 16 46 H 0.15 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -87.14 386.08 2.90 -84.24 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.33 Total: 27.97 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 6.20 Total: -26.46 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -2.12 Total: -74.41 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -3.54 Total: -57.80 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -87.14 2.90 -84.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492768868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.129 kcal (2) G-P(sol) polarization free energy of solvation -87.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds