Wall clock time and date at job start Tue Mar 31 2020 19:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99886 * 2 1 4 4 O 1.42904 * 109.47069 * 74.99596 * 3 2 1 5 5 C 1.42902 * 113.99563 * 75.00382 * 4 3 2 6 6 C 1.53005 * 109.46976 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47051 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.46990 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00065 * 179.97438 * 8 7 6 10 10 O 1.21726 * 120.00073 * 359.97438 * 9 8 7 11 11 C 1.46258 * 120.00322 * 179.97438 * 9 8 7 12 12 C 1.35015 * 120.00185 * 179.97438 * 11 9 8 13 13 C 1.46966 * 119.99859 * 179.72327 * 12 11 9 14 14 C 1.40020 * 120.10099 * 359.72646 * 13 12 11 15 15 C 1.37601 * 119.89632 * 179.78802 * 14 13 12 16 16 C 1.39173 * 120.10087 * 0.48795 * 15 14 13 17 17 O 1.35568 * 119.90002 * 179.76457 * 16 15 14 18 18 C 1.34779 * 117.00070 * 174.42258 * 17 16 15 19 19 H 1.07996 * 120.00296 * 5.05680 * 18 17 16 20 20 C 1.38728 * 119.99880 * 185.05920 * 18 17 16 21 21 N 1.31504 * 119.99788 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47005 * 59.99702 * 22 20 18 24 24 H 1.48497 * 109.47002 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47212 * 299.99834 * 22 20 18 26 26 C 1.39182 * 120.20443 * 359.74007 * 16 15 14 27 27 C 1.37597 * 120.10073 * 0.02562 * 26 16 15 28 28 H 1.09007 * 109.46551 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47233 * 300.00018 * 1 2 3 30 30 H 1.08999 * 109.47404 * 60.00546 * 1 2 3 31 31 H 1.09002 * 109.47009 * 314.99898 * 3 2 1 32 32 H 1.09001 * 109.47197 * 194.99784 * 3 2 1 33 33 H 1.09002 * 109.47543 * 59.99705 * 5 4 3 34 34 H 1.09003 * 109.47379 * 299.99598 * 5 4 3 35 35 H 1.08997 * 109.46792 * 59.99773 * 6 5 4 36 36 H 1.09003 * 109.46783 * 300.00017 * 6 5 4 37 37 H 1.09000 * 109.47095 * 59.99600 * 7 6 5 38 38 H 1.09000 * 109.46745 * 299.99703 * 7 6 5 39 39 H 0.97004 * 120.00076 * 359.97438 * 8 7 6 40 40 H 1.08007 * 119.99439 * 359.72456 * 11 9 8 41 41 H 1.07994 * 120.00134 * 359.72623 * 12 11 9 42 42 H 1.08001 * 120.05478 * 0.02562 * 14 13 12 43 43 H 1.08000 * 119.94685 * 180.22931 * 15 14 13 44 44 H 0.97004 * 119.99826 * 180.02562 * 21 20 18 45 45 H 1.07995 * 119.94818 * 179.97438 * 26 16 15 46 46 H 1.07996 * 120.05582 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8853 1.8825 1.3014 5 6 2.7911 1.3427 2.2658 6 6 2.5697 2.0306 3.6145 7 6 3.5399 1.4531 4.6469 8 7 3.3276 2.1113 5.9383 9 6 4.0744 1.7611 7.0041 10 8 4.9251 0.8974 6.8939 11 6 3.8628 2.4186 8.2933 12 6 4.6106 2.0673 9.3612 13 6 4.4021 2.7324 10.6550 14 6 3.4324 3.7346 10.7813 15 6 3.2377 4.3514 11.9958 16 6 4.0098 3.9877 13.0951 17 8 3.8178 4.6014 14.2886 18 6 4.5141 4.1262 15.3401 19 1 5.2479 3.3473 15.1943 20 6 4.2883 4.6375 16.6098 21 7 3.3951 5.5862 16.7872 22 14 5.2530 3.9783 18.0673 23 1 6.7037 4.2025 17.8430 24 1 4.8284 4.6851 19.3023 25 1 4.9941 2.5236 18.2151 26 6 4.9781 2.9954 12.9732 27 6 5.1765 2.3697 11.7639 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.4941 1.9330 -0.7267 32 1 3.0648 1.2337 -0.2659 33 1 3.8162 1.5116 1.9361 34 1 2.6149 0.2721 2.3705 35 1 1.5446 1.8620 3.9444 36 1 2.7462 3.1011 3.5095 37 1 4.5649 1.6220 4.3167 38 1 3.3638 0.3825 4.7519 39 1 2.6494 2.7993 6.0263 40 1 3.1110 3.1881 8.3900 41 1 5.3620 1.2977 9.2645 42 1 2.8356 4.0203 9.9277 43 1 2.4875 5.1219 12.0950 44 1 3.2375 5.9440 17.6750 45 1 5.5751 2.7167 13.8289 46 1 5.9283 1.6001 11.6700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493397407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:08 Heat of formation + Delta-G solvation = -127.844140 kcal Electronic energy + Delta-G solvation = -26058.681581 eV Core-core repulsion = 21914.391358 eV Total energy + Delta-G solvation = -4144.290223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.67985 -39.32425 -39.10552 -37.06721 -36.85565 -35.40302 -33.21343 -32.36473 -31.96369 -30.43145 -28.45502 -27.92481 -26.39678 -25.62265 -24.64986 -23.06044 -22.19361 -21.98366 -20.73266 -19.30190 -18.17180 -17.82047 -17.37417 -17.13973 -17.03614 -16.61911 -16.05043 -15.89028 -14.95906 -14.86216 -14.75259 -14.67923 -14.42614 -14.25886 -13.88677 -13.81852 -13.49285 -13.33559 -13.03360 -12.60710 -12.44762 -12.30125 -12.01801 -11.92847 -11.79189 -11.71847 -11.61434 -11.38397 -11.10762 -11.07912 -10.71014 -10.68813 -10.54755 -10.38005 -9.81469 -9.60798 -9.50305 -9.16644 -8.84894 -8.38397 -7.11703 -6.65275 -4.20233 1.07008 2.13447 2.55779 2.88622 3.04055 3.05695 3.08065 3.27999 3.45076 3.58051 3.82272 4.48251 4.50953 4.54316 4.57713 4.74396 4.77611 4.91315 4.92178 4.95906 5.03814 5.04781 5.07562 5.13062 5.24682 5.27292 5.31897 5.52972 5.59953 5.66867 5.68224 5.74052 6.01109 6.11779 6.23040 6.32504 6.46669 6.48814 6.60839 6.70827 6.79038 6.91504 7.12758 7.23510 7.27881 7.52928 7.63787 7.79893 8.32843 8.79371 9.46253 10.51243 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.038950 B = 0.001285 C = 0.001261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.693201 B =21785.922809 C =22203.616614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.405 6.405 3 C 0.214 3.786 4 O -0.401 6.401 5 C 0.066 3.934 6 C -0.131 4.131 7 C 0.124 3.876 8 N -0.734 5.734 9 C 0.556 3.444 10 O -0.559 6.559 11 C -0.284 4.284 12 C 0.039 3.961 13 C -0.200 4.200 14 C -0.043 4.043 15 C -0.199 4.199 16 C 0.167 3.833 17 O -0.162 6.162 18 C -0.394 4.394 19 H 0.097 0.903 20 C 0.043 3.957 21 N -0.852 5.852 22 Si 0.944 3.056 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.267 1.267 26 C -0.242 4.242 27 C -0.035 4.035 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.401 0.599 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.275 0.725 45 H 0.131 0.869 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 -6.507 -27.445 28.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.326 6.326 3 C 0.099 3.901 4 O -0.322 6.322 5 C -0.010 4.010 6 C -0.169 4.169 7 C 0.000 4.000 8 N -0.386 5.386 9 C 0.348 3.652 10 O -0.440 6.440 11 C -0.305 4.305 12 C 0.019 3.981 13 C -0.201 4.201 14 C -0.061 4.061 15 C -0.219 4.219 16 C 0.110 3.890 17 O -0.063 6.063 18 C -0.470 4.470 19 H 0.114 0.886 20 C -0.164 4.164 21 N -0.485 5.485 22 Si 0.768 3.232 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.192 1.192 26 C -0.261 4.261 27 C -0.053 4.053 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.235 0.765 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.085 0.915 45 H 0.149 0.851 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.264 -6.786 -27.185 28.209 hybrid contribution 0.078 0.105 0.631 0.644 sum -3.186 -6.681 -26.555 27.567 Atomic orbital electron populations 1.22781 0.80345 1.02858 1.00523 1.88013 1.20990 1.29599 1.93953 1.23949 0.98711 0.82748 0.84667 1.87982 1.60926 1.62268 1.21031 1.22383 0.92500 0.97904 0.88260 1.21693 1.00716 1.01374 0.93075 1.21089 0.99032 0.97373 0.82501 1.45799 1.40463 1.42649 1.09697 1.18422 0.80304 0.82039 0.84443 1.90778 1.34607 1.33098 1.85493 1.22420 1.07790 1.07623 0.92625 1.22287 0.92698 0.92491 0.90610 1.18469 1.04229 1.04033 0.93342 1.20883 0.95467 0.93825 0.95938 1.20148 1.04063 1.05938 0.91721 1.19617 0.92101 0.90037 0.87232 1.83901 1.58904 1.50013 1.13481 1.21434 1.19620 1.21723 0.84183 0.88583 1.25389 0.96896 0.95991 0.98103 1.70003 1.30377 1.24016 1.24064 0.85720 0.79352 0.79108 0.78995 1.19244 1.20071 1.19232 1.21099 1.03804 1.02461 0.98775 1.20990 0.96070 0.96547 0.91689 0.89657 0.93197 0.93887 0.89050 0.89048 0.92699 0.92165 0.90383 0.90346 0.91446 0.91426 0.76465 0.85852 0.85929 0.86399 0.86130 0.91540 0.85121 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.89 101.05 1.10 1.27 16 2 O -0.41 -3.12 10.76 -59.04 -0.64 -3.75 16 3 C 0.21 1.26 7.07 101.05 0.71 1.98 16 4 O -0.40 -3.12 10.40 -59.04 -0.61 -3.74 16 5 C 0.07 0.46 5.82 37.16 0.22 0.67 16 6 C -0.13 -0.88 5.70 -26.73 -0.15 -1.03 16 7 C 0.12 1.10 5.67 -4.04 -0.02 1.08 16 8 N -0.73 -7.44 5.55 -61.76 -0.34 -7.78 16 9 C 0.56 7.77 7.74 -13.04 -0.10 7.67 16 10 O -0.56 -9.81 16.23 5.17 0.08 -9.72 16 11 C -0.28 -3.85 9.41 -37.51 -0.35 -4.20 16 12 C 0.04 0.59 9.45 -37.19 -0.35 0.24 16 13 C -0.20 -3.40 5.87 -105.02 -0.62 -4.02 16 14 C -0.04 -0.73 9.40 -39.15 -0.37 -1.10 16 15 C -0.20 -3.97 9.97 -39.47 -0.39 -4.37 16 16 C 0.17 3.82 6.66 -38.88 -0.26 3.56 16 17 O -0.16 -4.40 9.74 0.75 0.01 -4.39 16 18 C -0.39 -10.46 9.48 30.91 0.29 -10.17 16 19 H 0.10 2.34 5.18 -52.49 -0.27 2.06 16 20 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 21 N -0.85 -23.79 13.67 55.48 0.76 -23.03 16 22 Si 0.94 19.46 29.55 -169.99 -5.02 14.44 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 C -0.24 -5.00 9.14 -39.47 -0.36 -5.36 16 27 C -0.03 -0.62 9.78 -39.14 -0.38 -1.00 16 28 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 29 H 0.05 0.29 8.03 -51.93 -0.42 -0.12 16 30 H 0.04 0.17 8.11 -51.93 -0.42 -0.25 16 31 H 0.09 0.37 8.01 -51.93 -0.42 -0.05 16 32 H 0.09 0.40 8.01 -51.93 -0.42 -0.02 16 33 H 0.05 0.32 8.11 -51.93 -0.42 -0.10 16 34 H 0.06 0.44 8.03 -51.93 -0.42 0.02 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.40 3.02 8.45 -40.82 -0.34 2.67 16 40 H 0.12 1.42 6.07 -52.48 -0.32 1.11 16 41 H 0.12 1.86 7.52 -52.49 -0.39 1.46 16 42 H 0.12 1.62 6.16 -52.49 -0.32 1.30 16 43 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.13 2.67 5.62 -52.49 -0.29 2.37 16 46 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 397.22 15.07 5.99 5.99 Total: -1.00 -32.46 397.22 -7.47 -39.93 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.55 Total: 5.81 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -1.13 Total: -13.76 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.42 Total: -30.81 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.16 Total: -21.60 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.46 -7.47 -39.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493397407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.914 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds