Wall clock time and date at job start Tue Mar 31 2020 19:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99886 * 2 1 4 4 O 1.42904 * 109.47069 * 74.99596 * 3 2 1 5 5 C 1.42902 * 113.99563 * 75.00382 * 4 3 2 6 6 C 1.53005 * 109.46976 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47051 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.46990 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00065 * 179.97438 * 8 7 6 10 10 O 1.21726 * 120.00073 * 359.97438 * 9 8 7 11 11 C 1.46258 * 120.00322 * 179.97438 * 9 8 7 12 12 C 1.35015 * 120.00185 * 179.97438 * 11 9 8 13 13 C 1.46966 * 119.99859 * 179.72327 * 12 11 9 14 14 C 1.40020 * 120.10099 * 359.72646 * 13 12 11 15 15 C 1.37601 * 119.89632 * 179.78802 * 14 13 12 16 16 C 1.39173 * 120.10087 * 0.48795 * 15 14 13 17 17 O 1.35568 * 119.90002 * 179.76457 * 16 15 14 18 18 C 1.34779 * 117.00070 * 174.42258 * 17 16 15 19 19 H 1.07996 * 120.00296 * 5.05680 * 18 17 16 20 20 C 1.38728 * 119.99880 * 185.05920 * 18 17 16 21 21 N 1.31504 * 119.99788 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47005 * 59.99702 * 22 20 18 24 24 H 1.48497 * 109.47002 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47212 * 299.99834 * 22 20 18 26 26 C 1.39182 * 120.20443 * 359.74007 * 16 15 14 27 27 C 1.37597 * 120.10073 * 0.02562 * 26 16 15 28 28 H 1.09007 * 109.46551 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47233 * 300.00018 * 1 2 3 30 30 H 1.08999 * 109.47404 * 60.00546 * 1 2 3 31 31 H 1.09002 * 109.47009 * 314.99898 * 3 2 1 32 32 H 1.09001 * 109.47197 * 194.99784 * 3 2 1 33 33 H 1.09002 * 109.47543 * 59.99705 * 5 4 3 34 34 H 1.09003 * 109.47379 * 299.99598 * 5 4 3 35 35 H 1.08997 * 109.46792 * 59.99773 * 6 5 4 36 36 H 1.09003 * 109.46783 * 300.00017 * 6 5 4 37 37 H 1.09000 * 109.47095 * 59.99600 * 7 6 5 38 38 H 1.09000 * 109.46745 * 299.99703 * 7 6 5 39 39 H 0.97004 * 120.00076 * 359.97438 * 8 7 6 40 40 H 1.08007 * 119.99439 * 359.72456 * 11 9 8 41 41 H 1.07994 * 120.00134 * 359.72623 * 12 11 9 42 42 H 1.08001 * 120.05478 * 0.02562 * 14 13 12 43 43 H 1.08000 * 119.94685 * 180.22931 * 15 14 13 44 44 H 0.97004 * 119.99826 * 180.02562 * 21 20 18 45 45 H 1.07995 * 119.94818 * 179.97438 * 26 16 15 46 46 H 1.07996 * 120.05582 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8853 1.8825 1.3014 5 6 2.7911 1.3427 2.2658 6 6 2.5697 2.0306 3.6145 7 6 3.5399 1.4531 4.6469 8 7 3.3276 2.1113 5.9383 9 6 4.0744 1.7611 7.0041 10 8 4.9251 0.8974 6.8939 11 6 3.8628 2.4186 8.2933 12 6 4.6106 2.0673 9.3612 13 6 4.4021 2.7324 10.6550 14 6 3.4324 3.7346 10.7813 15 6 3.2377 4.3514 11.9958 16 6 4.0098 3.9877 13.0951 17 8 3.8178 4.6014 14.2886 18 6 4.5141 4.1262 15.3401 19 1 5.2479 3.3473 15.1943 20 6 4.2883 4.6375 16.6098 21 7 3.3951 5.5862 16.7872 22 14 5.2530 3.9783 18.0673 23 1 6.7037 4.2025 17.8430 24 1 4.8284 4.6851 19.3023 25 1 4.9941 2.5236 18.2151 26 6 4.9781 2.9954 12.9732 27 6 5.1765 2.3697 11.7639 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.4941 1.9330 -0.7267 32 1 3.0648 1.2337 -0.2659 33 1 3.8162 1.5116 1.9361 34 1 2.6149 0.2721 2.3705 35 1 1.5446 1.8620 3.9444 36 1 2.7462 3.1011 3.5095 37 1 4.5649 1.6220 4.3167 38 1 3.3638 0.3825 4.7519 39 1 2.6494 2.7993 6.0263 40 1 3.1110 3.1881 8.3900 41 1 5.3620 1.2977 9.2645 42 1 2.8356 4.0203 9.9277 43 1 2.4875 5.1219 12.0950 44 1 3.2375 5.9440 17.6750 45 1 5.5751 2.7167 13.8289 46 1 5.9283 1.6001 11.6700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493397407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:07 Heat of formation + Delta-G solvation = -149.765110 kcal Electronic energy + Delta-G solvation = -26059.632146 eV Core-core repulsion = 21914.391358 eV Total energy + Delta-G solvation = -4145.240788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91934 -40.59265 -39.83612 -38.50883 -37.56461 -36.25775 -34.72884 -34.00657 -32.79667 -31.95693 -29.79320 -28.42645 -27.59178 -26.96161 -25.28450 -24.25098 -23.64295 -22.72791 -22.03258 -20.62767 -19.72408 -18.84620 -18.34901 -18.21067 -17.86290 -17.17975 -16.88817 -16.68182 -16.43333 -16.32977 -15.95969 -15.63732 -15.57113 -15.45079 -15.15938 -14.78753 -14.62148 -14.50536 -14.26024 -14.10051 -13.59138 -13.30990 -13.17332 -12.98981 -12.85063 -12.67542 -12.56033 -12.54554 -12.22506 -12.22429 -12.13715 -11.82964 -11.21188 -11.18982 -11.10187 -10.99722 -10.87659 -10.57583 -10.08393 -9.88399 -8.67253 -8.51566 -6.17853 -0.23774 0.59381 1.14394 1.36231 1.47686 1.51908 2.13563 2.16010 2.37682 2.77719 2.87163 2.89500 3.18578 3.43286 3.79662 3.94834 3.95206 4.03510 4.09181 4.09798 4.29687 4.32387 4.36187 4.38022 4.48303 4.48898 4.51087 4.54128 4.59120 4.65809 4.69799 4.85942 4.95483 5.03422 5.08354 5.09170 5.20459 5.29277 5.34337 5.46374 5.59771 5.64641 5.78436 5.82340 5.97741 6.11376 6.24602 6.60353 6.92706 7.28455 7.69738 8.70236 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.038950 B = 0.001285 C = 0.001261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.693201 B =21785.922809 C =22203.616614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.427 6.427 3 C 0.206 3.794 4 O -0.415 6.415 5 C 0.065 3.935 6 C -0.118 4.118 7 C 0.124 3.876 8 N -0.715 5.715 9 C 0.549 3.451 10 O -0.596 6.596 11 C -0.245 4.245 12 C 0.015 3.985 13 C -0.171 4.171 14 C -0.038 4.038 15 C -0.207 4.207 16 C 0.129 3.871 17 O -0.220 6.220 18 C -0.419 4.419 19 H 0.105 0.895 20 C -0.016 4.016 21 N -0.913 5.913 22 Si 1.017 2.983 23 H -0.257 1.257 24 H -0.271 1.271 25 H -0.257 1.257 26 C -0.249 4.249 27 C -0.040 4.040 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.417 0.583 40 H 0.153 0.847 41 H 0.124 0.876 42 H 0.161 0.839 43 H 0.123 0.877 44 H 0.275 0.725 45 H 0.125 0.875 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 -7.568 -30.884 31.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.348 6.348 3 C 0.092 3.908 4 O -0.336 6.336 5 C -0.012 4.012 6 C -0.155 4.155 7 C 0.000 4.000 8 N -0.367 5.367 9 C 0.341 3.659 10 O -0.479 6.479 11 C -0.266 4.266 12 C -0.005 4.005 13 C -0.172 4.172 14 C -0.055 4.055 15 C -0.226 4.226 16 C 0.077 3.923 17 O -0.125 6.125 18 C -0.495 4.495 19 H 0.123 0.877 20 C -0.215 4.215 21 N -0.550 5.550 22 Si 0.836 3.164 23 H -0.181 1.181 24 H -0.196 1.196 25 H -0.182 1.182 26 C -0.268 4.268 27 C -0.058 4.058 28 H 0.110 0.890 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.255 0.745 40 H 0.171 0.829 41 H 0.142 0.858 42 H 0.179 0.821 43 H 0.141 0.859 44 H 0.084 0.916 45 H 0.142 0.858 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.223 -7.858 -30.719 31.872 hybrid contribution 0.006 0.247 0.985 1.015 sum -3.217 -7.612 -29.734 30.861 Atomic orbital electron populations 1.22891 0.79530 1.03527 1.00924 1.87984 1.22064 1.30717 1.94014 1.24251 0.99793 0.82487 0.84219 1.87955 1.61272 1.62580 1.21820 1.22390 0.93006 0.97432 0.88365 1.21554 1.00096 1.01605 0.92290 1.21142 0.99550 0.97008 0.82252 1.45704 1.39535 1.42187 1.09279 1.18546 0.80325 0.81750 0.85326 1.90782 1.36306 1.34731 1.86102 1.22767 1.06068 1.05985 0.91747 1.22171 0.94466 0.93768 0.90095 1.18794 1.02255 1.02356 0.93803 1.21295 0.95445 0.92828 0.95960 1.20423 1.03800 1.06276 0.92081 1.20203 0.93681 0.91346 0.87098 1.83881 1.61271 1.52563 1.14768 1.21865 1.20256 1.22431 0.84907 0.87744 1.26590 0.97943 0.96159 1.00844 1.70140 1.33470 1.26752 1.24647 0.84664 0.78052 0.78703 0.74963 1.18106 1.19568 1.18154 1.21200 1.03372 1.02330 0.99915 1.21319 0.96896 0.96881 0.90752 0.88976 0.93857 0.92389 0.87264 0.87731 0.91700 0.92963 0.90101 0.89464 0.91752 0.92210 0.74545 0.82918 0.85783 0.82149 0.85909 0.91590 0.85770 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.89 113.37 1.23 1.49 16 2 O -0.43 -5.94 10.76 -126.21 -1.36 -7.30 16 3 C 0.21 2.03 7.07 113.37 0.80 2.83 16 4 O -0.42 -5.57 10.40 -126.21 -1.31 -6.88 16 5 C 0.06 0.75 5.82 71.98 0.42 1.17 16 6 C -0.12 -1.22 5.70 30.60 0.17 -1.05 16 7 C 0.12 1.84 5.67 86.38 0.49 2.33 16 8 N -0.72 -11.63 5.55 -467.50 -2.60 -14.22 16 9 C 0.55 13.24 7.74 86.33 0.67 13.91 16 10 O -0.60 -19.30 16.23 -4.43 -0.07 -19.37 16 11 C -0.25 -5.46 9.41 23.61 0.22 -5.24 16 12 C 0.01 0.39 9.45 23.82 0.23 0.62 16 13 C -0.17 -5.29 5.87 -20.12 -0.12 -5.41 16 14 C -0.04 -1.16 9.40 22.55 0.21 -0.95 16 15 C -0.21 -8.19 9.97 22.34 0.22 -7.96 16 16 C 0.13 6.13 6.66 22.72 0.15 6.28 16 17 O -0.22 -12.73 9.74 -20.22 -0.20 -12.93 16 18 C -0.42 -23.58 9.48 67.94 0.64 -22.94 16 19 H 0.11 5.36 5.18 -2.91 -0.02 5.35 16 20 C -0.02 -0.90 5.49 84.86 0.47 -0.44 16 21 N -0.91 -54.30 13.67 21.62 0.30 -54.00 16 22 Si 1.02 41.40 29.55 68.60 2.03 43.43 16 23 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 24 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 25 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 26 C -0.25 -10.43 9.14 22.34 0.20 -10.23 16 27 C -0.04 -1.37 9.78 22.55 0.22 -1.15 16 28 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.04 0.45 8.03 -2.39 -0.02 0.43 16 30 H 0.06 0.36 8.11 -2.39 -0.02 0.34 16 31 H 0.11 0.63 8.01 -2.39 -0.02 0.61 16 32 H 0.11 0.69 8.01 -2.39 -0.02 0.67 16 33 H 0.06 0.61 8.11 -2.39 -0.02 0.59 16 34 H 0.05 0.68 8.03 -2.39 -0.02 0.66 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.42 4.22 8.45 -92.71 -0.78 3.44 16 40 H 0.15 2.51 6.07 -2.91 -0.02 2.49 16 41 H 0.12 3.36 7.52 -2.91 -0.02 3.33 16 42 H 0.16 3.53 6.16 -2.91 -0.02 3.51 16 43 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 44 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.12 5.26 5.62 -2.91 -0.02 5.24 16 46 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -75.66 397.22 3.24 -72.42 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.22 Total: 25.59 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 6.24 Total: -26.73 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: -2.30 Total: -68.22 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -2.94 Total: -46.48 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -75.66 3.24 -72.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493397407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.349 kcal (2) G-P(sol) polarization free energy of solvation -75.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds