Wall clock time and date at job start Tue Mar 31 2020 19:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99952 * 2 1 4 4 O 1.42902 * 109.46877 * 75.00379 * 3 2 1 5 5 C 1.42892 * 114.00456 * 74.99679 * 4 3 2 6 6 C 1.53000 * 109.47244 * 180.02562 * 5 4 3 7 7 C 1.53008 * 109.46969 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.46632 * 179.97438 * 7 6 5 9 9 C 1.34785 * 119.99521 * 179.97438 * 8 7 6 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31506 * 119.99512 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00019 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47192 * 89.99431 * 22 20 18 24 24 H 1.48503 * 109.47066 * 209.99637 * 22 20 18 25 25 H 1.48500 * 109.47078 * 329.99517 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.09001 * 109.47020 * 59.99574 * 1 2 3 29 29 H 1.08998 * 109.46718 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47117 * 299.99929 * 1 2 3 31 31 H 1.08996 * 109.47130 * 314.99911 * 3 2 1 32 32 H 1.08998 * 109.47229 * 194.99788 * 3 2 1 33 33 H 1.09004 * 109.46941 * 59.99893 * 5 4 3 34 34 H 1.09005 * 109.47220 * 300.00515 * 5 4 3 35 35 H 1.08992 * 109.47168 * 60.00150 * 6 5 4 36 36 H 1.09003 * 109.46680 * 299.99665 * 6 5 4 37 37 H 1.08992 * 109.47442 * 59.99841 * 7 6 5 38 38 H 1.09003 * 109.46758 * 299.99142 * 7 6 5 39 39 H 0.96995 * 120.00513 * 359.97438 * 8 7 6 40 40 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 41 41 H 1.07997 * 120.00191 * 168.68069 * 12 11 9 42 42 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 43 43 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 44 44 H 0.97008 * 119.99650 * 180.02562 * 21 20 18 45 45 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 46 46 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 8 1.8855 1.8824 1.3014 5 6 2.7911 1.3425 2.2659 6 6 2.5690 2.0296 3.6148 7 6 3.5392 1.4519 4.6473 8 7 3.3268 2.1102 5.9387 9 6 4.0737 1.7597 7.0045 10 8 4.9242 0.8961 6.8942 11 6 3.8576 2.4127 8.2953 12 6 4.5026 1.9660 9.3942 13 6 5.2218 0.6851 9.3542 14 6 4.6364 -0.4302 8.7424 15 6 5.3154 -1.6263 8.7031 16 6 6.5778 -1.7314 9.2797 17 8 7.2412 -2.9132 9.2428 18 6 8.5044 -2.9207 9.7129 19 1 8.9155 -2.0330 10.1707 20 6 9.2764 -4.0685 9.6090 21 7 10.5086 -4.0759 10.0681 22 14 8.5655 -5.6036 8.8168 23 1 8.8447 -5.5827 7.3584 24 1 9.1888 -6.8074 9.4230 25 1 7.0977 -5.6410 9.0393 26 6 7.1614 -0.6271 9.8936 27 6 6.4921 0.5746 9.9326 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.4942 1.9330 -0.7266 32 1 3.0649 1.2337 -0.2659 33 1 3.8163 1.5115 1.9361 34 1 2.6149 0.2719 2.3704 35 1 1.5439 1.8602 3.9443 36 1 2.7450 3.1002 3.5105 37 1 4.5641 1.6215 4.3176 38 1 3.3635 0.3812 4.7516 39 1 2.6488 2.7982 6.0267 40 1 3.1821 3.2521 8.3695 41 1 4.4901 2.5502 10.3025 42 1 3.6551 -0.3505 8.2983 43 1 4.8664 -2.4860 8.2282 44 1 11.0486 -4.8785 9.9951 45 1 8.1410 -0.7134 10.3400 46 1 6.9460 1.4311 10.4088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493397410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:12 Heat of formation + Delta-G solvation = -107.244488 kcal Electronic energy + Delta-G solvation = -27419.381851 eV Core-core repulsion = 23275.984896 eV Total energy + Delta-G solvation = -4143.396955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.84115 -39.28623 -38.84503 -37.05147 -36.60895 -35.21137 -33.08392 -32.31662 -31.91895 -30.19442 -28.41191 -27.86980 -26.37030 -25.31771 -24.56410 -22.88261 -21.93791 -21.88033 -20.88629 -19.20962 -17.83466 -17.73232 -17.37940 -17.26619 -16.87215 -16.53090 -15.95548 -15.80916 -14.83866 -14.81733 -14.69802 -14.47141 -14.24576 -13.91554 -13.79261 -13.67262 -13.42717 -13.22109 -12.84612 -12.56369 -12.36800 -12.22929 -12.19400 -12.07304 -11.93165 -11.55895 -11.41430 -11.30740 -10.93873 -10.75238 -10.65222 -10.61481 -10.30112 -10.13309 -9.54096 -9.45784 -9.20987 -9.02329 -8.74147 -8.00098 -6.96864 -6.40745 -4.04494 1.18580 2.34374 2.62906 2.96297 3.24340 3.28586 3.35723 3.42962 3.52583 3.59260 4.25804 4.56332 4.61389 4.63199 4.65703 4.81973 4.85125 4.90984 4.98123 5.01983 5.09620 5.15531 5.16221 5.18493 5.23617 5.31059 5.41239 5.54618 5.68261 5.77523 5.77538 5.81611 6.19434 6.27005 6.30633 6.37360 6.46615 6.51644 6.68040 6.78204 6.93693 7.19387 7.32911 7.39668 7.61576 7.68765 7.86092 8.07816 8.48968 8.94531 9.59042 10.66585 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010186 B = 0.002242 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.181689 B =12487.361810 C =14699.207084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.404 6.404 3 C 0.214 3.786 4 O -0.402 6.402 5 C 0.065 3.935 6 C -0.128 4.128 7 C 0.124 3.876 8 N -0.736 5.736 9 C 0.538 3.462 10 O -0.511 6.511 11 C -0.264 4.264 12 C 0.026 3.974 13 C -0.181 4.181 14 C 0.010 3.990 15 C -0.202 4.202 16 C 0.177 3.823 17 O -0.213 6.213 18 C -0.387 4.387 19 H 0.108 0.892 20 C 0.063 3.937 21 N -0.877 5.877 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.238 4.238 27 C -0.043 4.043 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.396 0.604 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.280 0.720 45 H 0.132 0.868 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.060 15.064 -14.632 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.324 6.324 3 C 0.099 3.901 4 O -0.323 6.323 5 C -0.012 4.012 6 C -0.166 4.166 7 C 0.000 4.000 8 N -0.390 5.390 9 C 0.328 3.672 10 O -0.388 6.388 11 C -0.285 4.285 12 C 0.006 3.994 13 C -0.182 4.182 14 C -0.008 4.008 15 C -0.222 4.222 16 C 0.124 3.876 17 O -0.117 6.117 18 C -0.463 4.463 19 H 0.125 0.875 20 C -0.141 4.141 21 N -0.515 5.515 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.257 4.257 27 C -0.062 4.062 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.230 0.770 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.121 0.879 43 H 0.132 0.868 44 H 0.090 0.910 45 H 0.150 0.850 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.289 14.019 -14.726 28.027 hybrid contribution -0.402 -0.071 -0.449 0.607 sum -19.692 13.948 -15.175 28.506 Atomic orbital electron populations 1.22772 0.80443 1.02850 1.00402 1.88031 1.20903 1.29556 1.93933 1.23943 0.98750 0.82736 0.84633 1.87960 1.60992 1.62311 1.21051 1.22398 0.92538 0.98025 0.88205 1.21675 1.00604 1.01170 0.93168 1.21088 0.99045 0.97494 0.82422 1.45928 1.40257 1.42832 1.09972 1.18506 0.81435 0.82640 0.84615 1.90998 1.32796 1.30492 1.84477 1.22612 1.08114 1.05102 0.92669 1.22354 0.88697 0.92268 0.96075 1.18361 0.97213 0.93124 1.09530 1.20445 0.97503 0.91019 0.91881 1.20003 0.95089 0.98683 1.08408 1.19274 0.91237 0.85169 0.91954 1.83504 1.27493 1.27827 1.72887 1.20828 0.85154 1.01977 1.38298 0.87469 1.24495 0.94483 0.98653 0.96432 1.69629 1.07349 1.30141 1.44336 0.86177 0.80392 0.80755 0.79581 1.19828 1.20765 1.18308 1.21069 1.02861 0.93262 1.08509 1.20795 0.93241 0.96273 0.95853 0.93961 0.89659 0.93265 0.89114 0.89027 0.92624 0.92067 0.90563 0.90567 0.91394 0.91277 0.77022 0.86024 0.85870 0.87922 0.86841 0.91020 0.85024 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.89 101.05 1.10 1.30 16 2 O -0.40 -3.56 10.76 -59.04 -0.64 -4.20 16 3 C 0.21 1.48 7.07 101.05 0.71 2.19 16 4 O -0.40 -3.47 10.40 -59.04 -0.61 -4.08 16 5 C 0.07 0.53 5.82 37.16 0.22 0.74 16 6 C -0.13 -0.96 5.70 -26.73 -0.15 -1.11 16 7 C 0.12 1.24 5.67 -4.04 -0.02 1.21 16 8 N -0.74 -7.58 5.55 -61.75 -0.34 -7.92 16 9 C 0.54 7.60 6.77 -13.04 -0.09 7.51 16 10 O -0.51 -9.67 12.17 5.18 0.06 -9.61 16 11 C -0.26 -3.16 9.90 -37.50 -0.37 -3.53 16 12 C 0.03 0.35 9.80 -37.19 -0.36 -0.02 16 13 C -0.18 -3.26 4.54 -105.03 -0.48 -3.74 16 14 C 0.01 0.19 6.59 -39.15 -0.26 -0.07 16 15 C -0.20 -4.42 9.97 -39.47 -0.39 -4.81 16 16 C 0.18 4.34 6.66 -38.88 -0.26 4.08 16 17 O -0.21 -5.85 8.57 0.74 0.01 -5.85 16 18 C -0.39 -11.20 9.94 30.91 0.31 -10.89 16 19 H 0.11 3.16 5.41 -52.49 -0.28 2.88 16 20 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16 21 N -0.88 -25.68 13.96 55.48 0.77 -24.90 16 22 Si 0.91 22.17 28.62 -169.99 -4.86 17.31 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 26 C -0.24 -5.42 9.14 -39.47 -0.36 -5.78 16 27 C -0.04 -0.83 9.78 -39.15 -0.38 -1.22 16 28 H 0.04 0.20 8.11 -51.93 -0.42 -0.22 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.32 8.03 -51.93 -0.42 -0.09 16 31 H 0.09 0.44 8.01 -51.93 -0.42 0.02 16 32 H 0.09 0.51 8.01 -51.93 -0.42 0.10 16 33 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 34 H 0.06 0.54 8.03 -51.93 -0.42 0.12 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.40 2.82 8.45 -40.82 -0.34 2.47 16 40 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.10 1.78 7.02 -52.48 -0.37 1.42 16 43 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 44 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.13 3.11 5.62 -52.49 -0.29 2.81 16 46 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 391.18 15.07 5.89 5.89 Total: -1.00 -34.43 391.18 -7.35 -41.77 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.74 Total: 4.01 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -0.89 Total: -12.42 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.43 Total: -32.83 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -1.18 Total: -23.73 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.86 Total: 17.31 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.43 -7.35 -41.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493397410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.470 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds