Wall clock time and date at job start Tue Mar 31 2020 19:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99952 * 2 1 4 4 O 1.42902 * 109.46877 * 75.00379 * 3 2 1 5 5 C 1.42892 * 114.00456 * 74.99679 * 4 3 2 6 6 C 1.53000 * 109.47244 * 180.02562 * 5 4 3 7 7 C 1.53008 * 109.46969 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.46632 * 179.97438 * 7 6 5 9 9 C 1.34785 * 119.99521 * 179.97438 * 8 7 6 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31506 * 119.99512 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00019 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47192 * 89.99431 * 22 20 18 24 24 H 1.48503 * 109.47066 * 209.99637 * 22 20 18 25 25 H 1.48500 * 109.47078 * 329.99517 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.09001 * 109.47020 * 59.99574 * 1 2 3 29 29 H 1.08998 * 109.46718 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47117 * 299.99929 * 1 2 3 31 31 H 1.08996 * 109.47130 * 314.99911 * 3 2 1 32 32 H 1.08998 * 109.47229 * 194.99788 * 3 2 1 33 33 H 1.09004 * 109.46941 * 59.99893 * 5 4 3 34 34 H 1.09005 * 109.47220 * 300.00515 * 5 4 3 35 35 H 1.08992 * 109.47168 * 60.00150 * 6 5 4 36 36 H 1.09003 * 109.46680 * 299.99665 * 6 5 4 37 37 H 1.08992 * 109.47442 * 59.99841 * 7 6 5 38 38 H 1.09003 * 109.46758 * 299.99142 * 7 6 5 39 39 H 0.96995 * 120.00513 * 359.97438 * 8 7 6 40 40 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 41 41 H 1.07997 * 120.00191 * 168.68069 * 12 11 9 42 42 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 43 43 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 44 44 H 0.97008 * 119.99650 * 180.02562 * 21 20 18 45 45 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 46 46 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 8 1.8855 1.8824 1.3014 5 6 2.7911 1.3425 2.2659 6 6 2.5690 2.0296 3.6148 7 6 3.5392 1.4519 4.6473 8 7 3.3268 2.1102 5.9387 9 6 4.0737 1.7597 7.0045 10 8 4.9242 0.8961 6.8942 11 6 3.8576 2.4127 8.2953 12 6 4.5026 1.9660 9.3942 13 6 5.2218 0.6851 9.3542 14 6 4.6364 -0.4302 8.7424 15 6 5.3154 -1.6263 8.7031 16 6 6.5778 -1.7314 9.2797 17 8 7.2412 -2.9132 9.2428 18 6 8.5044 -2.9207 9.7129 19 1 8.9155 -2.0330 10.1707 20 6 9.2764 -4.0685 9.6090 21 7 10.5086 -4.0759 10.0681 22 14 8.5655 -5.6036 8.8168 23 1 8.8447 -5.5827 7.3584 24 1 9.1888 -6.8074 9.4230 25 1 7.0977 -5.6410 9.0393 26 6 7.1614 -0.6271 9.8936 27 6 6.4921 0.5746 9.9326 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.4942 1.9330 -0.7266 32 1 3.0649 1.2337 -0.2659 33 1 3.8163 1.5115 1.9361 34 1 2.6149 0.2719 2.3704 35 1 1.5439 1.8602 3.9443 36 1 2.7450 3.1002 3.5105 37 1 4.5641 1.6215 4.3176 38 1 3.3635 0.3812 4.7516 39 1 2.6488 2.7982 6.0267 40 1 3.1821 3.2521 8.3695 41 1 4.4901 2.5502 10.3025 42 1 3.6551 -0.3505 8.2983 43 1 4.8664 -2.4860 8.2282 44 1 11.0486 -4.8785 9.9951 45 1 8.1410 -0.7134 10.3400 46 1 6.9460 1.4311 10.4088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493397410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:11 Heat of formation + Delta-G solvation = -131.656531 kcal Electronic energy + Delta-G solvation = -27420.440437 eV Core-core repulsion = 23275.984896 eV Total energy + Delta-G solvation = -4144.455541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.15676 -40.48418 -39.85852 -38.38190 -37.53279 -36.19490 -34.64421 -34.09302 -32.80123 -31.85494 -29.85036 -28.44590 -27.51264 -26.90556 -25.27363 -24.04834 -23.57501 -22.74138 -22.26363 -20.45933 -19.68919 -19.12703 -18.35348 -18.10857 -17.87883 -17.18476 -16.86805 -16.70016 -16.55242 -16.09561 -15.87914 -15.67812 -15.53485 -15.21145 -15.10131 -14.83377 -14.61486 -14.32697 -14.25973 -14.24167 -13.97058 -13.72181 -13.12470 -12.99945 -12.85189 -12.65790 -12.54438 -12.49299 -12.28131 -12.21636 -11.96072 -11.84703 -11.33823 -11.19600 -11.03354 -10.90695 -10.70937 -10.44285 -10.04481 -9.59128 -8.60882 -8.52285 -6.23062 -0.02968 0.68190 1.09140 1.28020 1.34445 1.49474 2.19158 2.26316 2.48417 2.78938 2.79614 2.88959 3.04546 3.22879 3.91397 3.93304 4.02150 4.07609 4.08627 4.13622 4.20438 4.29117 4.35037 4.46674 4.49552 4.52792 4.53502 4.58462 4.59058 4.69512 4.78346 4.84608 4.93615 5.07656 5.08230 5.19048 5.22515 5.40962 5.45111 5.52710 5.67903 5.76676 5.77945 5.83151 5.90281 6.22710 6.26328 6.72383 6.81866 7.45233 7.57822 8.59264 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010186 B = 0.002242 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.181689 B =12487.361810 C =14699.207084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.429 6.429 3 C 0.206 3.794 4 O -0.412 6.412 5 C 0.063 3.937 6 C -0.112 4.112 7 C 0.125 3.875 8 N -0.715 5.715 9 C 0.525 3.475 10 O -0.568 6.568 11 C -0.226 4.226 12 C 0.000 4.000 13 C -0.151 4.151 14 C 0.011 3.989 15 C -0.210 4.210 16 C 0.132 3.868 17 O -0.245 6.245 18 C -0.400 4.400 19 H 0.082 0.918 20 C 0.010 3.990 21 N -0.920 5.920 22 Si 0.970 3.030 23 H -0.268 1.268 24 H -0.262 1.262 25 H -0.265 1.265 26 C -0.253 4.253 27 C -0.053 4.053 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.417 0.583 40 H 0.176 0.824 41 H 0.168 0.832 42 H 0.125 0.875 43 H 0.116 0.884 44 H 0.285 0.715 45 H 0.109 0.891 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.711 18.290 -15.747 33.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.350 6.350 3 C 0.092 3.908 4 O -0.332 6.332 5 C -0.014 4.014 6 C -0.150 4.150 7 C 0.000 4.000 8 N -0.368 5.368 9 C 0.315 3.685 10 O -0.449 6.449 11 C -0.246 4.246 12 C -0.019 4.019 13 C -0.152 4.152 14 C -0.008 4.008 15 C -0.229 4.229 16 C 0.083 3.917 17 O -0.152 6.152 18 C -0.476 4.476 19 H 0.100 0.900 20 C -0.188 4.188 21 N -0.561 5.561 22 Si 0.792 3.208 23 H -0.193 1.193 24 H -0.186 1.186 25 H -0.190 1.190 26 C -0.272 4.272 27 C -0.071 4.071 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.131 0.869 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.254 0.746 40 H 0.194 0.806 41 H 0.186 0.814 42 H 0.143 0.857 43 H 0.134 0.866 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -23.019 17.324 -15.860 32.887 hybrid contribution 0.392 -0.615 -0.271 0.777 sum -22.627 16.709 -16.131 32.425 Atomic orbital electron populations 1.22894 0.79449 1.03492 1.01018 1.88000 1.22187 1.30750 1.94016 1.24247 0.99681 0.82534 0.84300 1.87935 1.61124 1.62480 1.21708 1.22387 0.92863 0.97388 0.88716 1.21517 1.00083 1.01536 0.91887 1.21049 0.99140 0.96817 0.82959 1.45774 1.39479 1.42366 1.09194 1.19115 0.80998 0.82159 0.86207 1.91002 1.35343 1.33108 1.85424 1.23082 1.05981 1.04950 0.90572 1.22582 0.89400 0.90985 0.98943 1.18939 0.96138 0.95039 1.05040 1.20742 0.98214 0.90331 0.91485 1.20244 0.94343 1.00141 1.08177 1.19752 0.92488 0.85290 0.94207 1.83450 1.26903 1.29450 1.75375 1.20753 0.86411 1.01633 1.38848 0.90047 1.25289 0.94845 1.01538 0.97160 1.69705 1.08525 1.31345 1.46479 0.85236 0.79157 0.77586 0.78815 1.19295 1.18638 1.18956 1.21118 1.02451 0.94693 1.08932 1.21161 0.93814 0.95836 0.96268 0.92242 0.89136 0.93696 0.86930 0.88128 0.92179 0.93379 0.89761 0.89187 0.92721 0.92957 0.74577 0.80649 0.81440 0.85681 0.86563 0.90485 0.87289 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.89 113.37 1.23 1.54 16 2 O -0.43 -7.13 10.76 -126.21 -1.36 -8.48 16 3 C 0.21 2.53 7.07 113.37 0.80 3.33 16 4 O -0.41 -6.32 10.40 -126.21 -1.31 -7.63 16 5 C 0.06 0.94 5.82 71.98 0.42 1.35 16 6 C -0.11 -1.38 5.70 30.60 0.17 -1.21 16 7 C 0.12 2.25 5.67 86.38 0.49 2.74 16 8 N -0.71 -11.92 5.55 -467.49 -2.60 -14.51 16 9 C 0.52 12.82 6.77 86.32 0.58 13.40 16 10 O -0.57 -20.51 12.17 -4.40 -0.05 -20.56 16 11 C -0.23 -4.00 9.90 23.62 0.23 -3.77 16 12 C 0.00 0.00 9.80 23.82 0.23 0.24 16 13 C -0.15 -5.05 4.54 -20.13 -0.09 -5.14 16 14 C 0.01 0.39 6.59 22.55 0.15 0.54 16 15 C -0.21 -9.39 9.97 22.35 0.22 -9.17 16 16 C 0.13 6.86 6.66 22.72 0.15 7.01 16 17 O -0.24 -14.36 8.57 -20.28 -0.17 -14.54 16 18 C -0.40 -24.92 9.94 67.94 0.68 -24.24 16 19 H 0.08 5.29 5.41 -2.91 -0.02 5.27 16 20 C 0.01 0.62 5.49 84.86 0.47 1.09 16 21 N -0.92 -56.68 13.96 21.62 0.30 -56.38 16 22 Si 0.97 47.71 28.62 68.60 1.96 49.67 16 23 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 26 C -0.25 -12.14 9.14 22.34 0.20 -11.94 16 27 C -0.05 -1.99 9.78 22.55 0.22 -1.77 16 28 H 0.06 0.45 8.11 -2.39 -0.02 0.43 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.04 0.53 8.03 -2.39 -0.02 0.51 16 31 H 0.11 0.84 8.01 -2.39 -0.02 0.82 16 32 H 0.10 0.99 8.01 -2.39 -0.02 0.97 16 33 H 0.06 0.82 8.11 -2.39 -0.02 0.80 16 34 H 0.05 0.83 8.03 -2.38 -0.02 0.81 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.42 3.67 8.45 -92.71 -0.78 2.88 16 40 H 0.18 1.37 8.06 -2.91 -0.02 1.34 16 41 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.13 4.03 7.02 -2.91 -0.02 4.01 16 43 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 44 H 0.29 16.06 8.31 -92.70 -0.77 15.29 16 45 H 0.11 5.64 5.62 -2.91 -0.02 5.63 16 46 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -81.98 391.18 3.15 -78.83 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.21 Total: 19.61 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 6.17 Total: -26.00 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -2.29 Total: -70.89 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -2.90 Total: -51.22 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.96 Total: 49.67 kcal Total: -81.98 3.15 -78.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493397410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.828 kcal (2) G-P(sol) polarization free energy of solvation -81.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds