Wall clock time and date at job start Tue Mar 31 2020 19:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00202 * 2 1 4 4 C 1.53001 * 109.47089 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47389 * 65.00283 * 4 3 2 6 6 C 1.36781 * 119.99783 * 265.58505 * 5 4 3 7 7 H 1.08002 * 120.00107 * 142.15442 * 6 5 4 8 8 C 1.39068 * 120.00073 * 322.14206 * 6 5 4 9 9 N 1.31364 * 119.99984 * 344.50158 * 8 6 5 10 10 Si 1.86793 * 119.99814 * 164.49280 * 8 6 5 11 11 H 1.48498 * 109.47326 * 90.01049 * 10 8 6 12 12 H 1.48506 * 109.47084 * 210.00519 * 10 8 6 13 13 H 1.48496 * 109.47653 * 330.00270 * 10 8 6 14 14 C 1.34779 * 120.00323 * 85.57581 * 5 4 3 15 15 O 1.21806 * 119.99638 * 4.63843 * 14 5 4 16 16 C 1.41610 * 120.00046 * 184.63013 * 14 5 4 17 17 C 1.35312 * 119.99532 * 172.83739 * 16 14 5 18 18 C 1.46686 * 120.00498 * 346.94237 * 17 16 14 19 19 C 1.40079 * 120.15641 * 316.91711 * 18 17 16 20 20 C 1.36538 * 120.05442 * 179.97438 * 19 18 17 21 21 C 1.39192 * 120.39494 * 0.02562 * 20 19 18 22 22 O 1.35732 * 119.83745 * 179.97438 * 21 20 19 23 23 C 1.42896 * 117.00306 * 359.97438 * 22 21 20 24 24 C 1.38768 * 120.32115 * 359.97438 * 21 20 19 25 25 C 1.38390 * 119.93474 * 359.72189 * 24 21 20 26 26 O 1.35690 * 120.19292 * 180.29559 * 25 24 21 27 27 C 1.42894 * 117.00183 * 0.25966 * 26 25 24 28 28 H 1.09000 * 109.46833 * 59.99874 * 1 2 3 29 29 H 1.09002 * 109.46795 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46974 * 300.00155 * 1 2 3 31 31 H 1.09002 * 109.46943 * 60.00114 * 3 2 1 32 32 H 1.08996 * 109.47096 * 299.99918 * 3 2 1 33 33 H 1.08999 * 109.47279 * 304.99483 * 4 3 2 34 34 H 1.09001 * 109.46870 * 184.99911 * 4 3 2 35 35 H 0.96996 * 120.00115 * 179.97438 * 9 8 6 36 36 H 1.08000 * 120.00203 * 352.56196 * 16 14 5 37 37 H 1.08000 * 119.99903 * 166.94379 * 17 16 14 38 38 H 1.07993 * 119.96986 * 359.97438 * 19 18 17 39 39 H 1.07998 * 119.80317 * 179.97438 * 20 19 18 40 40 H 1.09003 * 109.47547 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.47334 * 299.99895 * 23 22 21 42 42 H 1.08999 * 109.47771 * 60.00087 * 23 22 21 43 43 H 1.07998 * 120.03039 * 180.02562 * 24 21 20 44 44 H 1.08998 * 109.47267 * 299.99468 * 27 26 25 45 45 H 1.09002 * 109.47294 * 59.99769 * 27 26 25 46 46 H 1.08999 * 109.47108 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1847 -0.7867 -1.3082 7 1 3.9116 -1.3379 -2.1959 8 6 4.7479 -1.4503 -0.2235 9 7 5.3552 -0.7680 0.7206 10 14 4.6406 -3.3116 -0.1091 11 1 5.8214 -3.9174 -0.7752 12 1 4.6147 -3.7191 1.3188 13 1 3.4004 -3.7782 -0.7795 14 6 4.1777 1.3238 -2.3457 15 8 4.0746 2.5354 -2.2734 16 6 4.5088 0.7137 -3.5800 17 6 4.5681 1.4583 -4.7082 18 6 4.0196 2.8187 -4.7190 19 6 2.7857 3.0848 -4.1117 20 6 2.2773 4.3519 -4.1225 21 6 2.9781 5.3867 -4.7355 22 8 2.4619 6.6420 -4.7400 23 6 1.1983 6.8262 -4.0988 24 6 4.2018 5.1410 -5.3420 25 6 4.7326 3.8630 -5.3335 26 8 5.9316 3.6182 -5.9197 27 6 6.5971 4.7289 -6.5241 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0902 35 1 5.7477 -1.2308 1.4773 36 1 4.7182 -0.3451 -3.6200 37 1 5.0194 1.0509 -5.6009 38 1 2.2361 2.2870 -3.6345 39 1 1.3255 4.5524 -3.6534 40 1 0.9011 7.8722 -4.1749 41 1 0.4497 6.2000 -4.5842 42 1 1.2796 6.5469 -3.0483 43 1 4.7417 5.9475 -5.8159 44 1 5.9671 5.1465 -7.3094 45 1 6.7904 5.4912 -5.7694 46 1 7.5418 4.3962 -6.9542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493479731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:41 Heat of formation + Delta-G solvation = -79.534185 kcal Electronic energy + Delta-G solvation = -29977.301536 eV Core-core repulsion = 25835.106190 eV Total energy + Delta-G solvation = -4142.195346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.21532 -38.90777 -38.65189 -37.11531 -36.18711 -34.65723 -32.67289 -31.54583 -30.20417 -29.67332 -28.61827 -27.12740 -26.72869 -25.83263 -24.74061 -23.52595 -21.97823 -21.48476 -20.16537 -18.74150 -18.43606 -16.79489 -16.58633 -16.30993 -15.86989 -15.73227 -15.45271 -15.35747 -15.30186 -14.85203 -14.54552 -14.44737 -14.33502 -13.77802 -13.63160 -13.05626 -12.87242 -12.70693 -12.40283 -12.26335 -12.03742 -11.95090 -11.68858 -11.53841 -11.37645 -11.15407 -11.07085 -10.98654 -10.91593 -10.65546 -10.60072 -10.36050 -10.27317 -9.98362 -9.12754 -8.97841 -8.83989 -8.41114 -8.00265 -7.40154 -7.01144 -6.30304 -3.96664 1.43173 1.93881 2.53383 3.19350 3.26145 3.31485 3.33624 3.61981 4.14866 4.28777 4.48912 4.59914 4.95191 5.05487 5.16859 5.18295 5.19858 5.23041 5.27241 5.35918 5.45865 5.50442 5.55785 5.65049 5.70584 5.80105 5.84873 5.94680 5.99036 6.05709 6.07977 6.23365 6.37274 6.42625 6.61088 6.70786 6.77827 6.91530 6.97849 7.17079 7.32425 7.37430 7.51768 7.53868 7.80014 7.83543 8.04150 8.42326 9.14169 9.58654 10.01786 10.69885 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.003914 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.398512 B = 7152.715101 C = 8682.615160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.055 3.945 4 C 0.109 3.891 5 N -0.415 5.415 6 C -0.315 4.315 7 H 0.089 0.911 8 C 0.045 3.955 9 N -0.863 5.863 10 Si 0.919 3.081 11 H -0.279 1.279 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.482 3.518 15 O -0.600 6.600 16 C -0.165 4.165 17 C -0.066 4.066 18 C -0.098 4.098 19 C 0.045 3.955 20 C -0.250 4.250 21 C 0.159 3.841 22 O -0.322 6.322 23 C 0.030 3.970 24 C -0.256 4.256 25 C 0.168 3.832 26 O -0.308 6.308 27 C 0.028 3.972 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.119 0.881 34 H 0.070 0.930 35 H 0.269 0.731 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.127 0.873 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 8.155 -8.634 13.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.023 4.023 4 C -0.015 4.015 5 N -0.130 5.130 6 C -0.443 4.443 7 H 0.107 0.893 8 C -0.160 4.160 9 N -0.501 5.501 10 Si 0.746 3.254 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.276 3.724 15 O -0.490 6.490 16 C -0.186 4.186 17 C -0.087 4.087 18 C -0.099 4.099 19 C 0.026 3.974 20 C -0.269 4.269 21 C 0.114 3.886 22 O -0.236 6.236 23 C -0.065 4.065 24 C -0.275 4.275 25 C 0.122 3.878 26 O -0.221 6.221 27 C -0.067 4.067 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.136 0.864 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.145 0.855 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.798 8.494 -8.421 13.292 hybrid contribution -0.404 -0.592 0.508 0.878 sum -6.203 7.902 -7.913 12.788 Atomic orbital electron populations 1.22642 0.83517 1.01725 0.98755 1.88147 1.17278 1.27783 1.95011 1.23022 0.96637 0.84207 0.98399 1.21526 0.88916 0.99358 0.91731 1.43399 1.54308 1.06986 1.08323 1.19341 1.39433 0.82223 1.03313 0.89337 1.25363 0.94180 1.00114 0.96382 1.69791 1.32393 1.36494 1.11378 0.86061 0.78733 0.82939 0.77678 1.20477 1.20853 1.19259 1.17284 0.82300 0.86713 0.86145 1.90717 1.58234 1.13755 1.86265 1.22286 1.02888 1.00436 0.92969 1.21837 0.97264 0.91983 0.97607 1.18060 0.95562 0.92633 1.03644 1.20384 0.92486 0.95767 0.88777 1.20602 1.02840 0.93763 1.09699 1.18678 0.92311 0.83028 0.94578 1.85941 1.36404 1.27074 1.74176 1.22992 0.83619 1.02462 0.97444 1.20021 0.98044 0.96555 1.12928 1.18701 0.84559 0.92161 0.92366 1.86040 1.30917 1.35841 1.69327 1.23006 0.97028 0.89500 0.97174 0.95066 0.90433 0.95211 0.94396 0.94382 0.86363 0.91138 0.92035 0.85350 0.86208 0.86144 0.86245 0.88758 0.92793 0.92545 0.85469 0.92919 0.92779 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.67 10.39 -35.23 -0.37 -8.03 16 3 C 0.05 1.13 6.25 37.16 0.23 1.37 16 4 C 0.11 2.60 5.33 -4.05 -0.02 2.58 16 5 N -0.42 -10.43 2.49 -118.06 -0.29 -10.73 16 6 C -0.31 -8.01 8.21 -15.04 -0.12 -8.13 16 7 H 0.09 2.17 6.68 -52.49 -0.35 1.81 16 8 C 0.05 1.14 5.06 -17.44 -0.09 1.05 16 9 N -0.86 -22.96 11.17 55.50 0.62 -22.34 16 10 Si 0.92 19.90 29.58 -169.99 -5.03 14.87 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 14 C 0.48 11.75 6.40 -14.97 -0.10 11.65 16 15 O -0.60 -15.25 11.84 5.09 0.06 -15.19 16 16 C -0.17 -3.54 8.98 -39.34 -0.35 -3.90 16 17 C -0.07 -1.26 9.35 -37.22 -0.35 -1.61 16 18 C -0.10 -1.91 4.47 -104.91 -0.47 -2.38 16 19 C 0.04 0.85 6.65 -39.51 -0.26 0.59 16 20 C -0.25 -4.29 8.96 -39.84 -0.36 -4.65 16 21 C 0.16 2.68 6.69 -39.03 -0.26 2.42 16 22 O -0.32 -4.78 10.48 -18.90 -0.20 -4.98 16 23 C 0.03 0.32 9.80 101.05 0.99 1.31 16 24 C -0.26 -4.29 8.97 -39.33 -0.35 -4.64 16 25 C 0.17 3.04 6.70 -38.64 -0.26 2.78 16 26 O -0.31 -5.07 9.95 -18.77 -0.19 -5.25 16 27 C 0.03 0.32 9.81 101.05 0.99 1.31 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.12 3.06 5.36 -51.93 -0.28 2.78 16 34 H 0.07 1.72 7.49 -51.93 -0.39 1.34 16 35 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.13 2.64 6.41 -52.49 -0.34 2.30 16 37 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.12 2.37 7.07 -52.49 -0.37 2.00 16 39 H 0.12 1.77 6.26 -52.49 -0.33 1.44 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.51 7.65 -51.93 -0.40 0.12 16 42 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 43 H 0.13 1.83 6.31 -52.49 -0.33 1.50 16 44 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 45 H 0.05 0.60 7.68 -51.93 -0.40 0.20 16 46 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -31.48 379.43 -5.83 -37.32 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.49 Total: 7.25 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 0.33 Total: 1.36 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.33 Total: -33.06 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.69 Total: -33.45 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.48 -5.83 -37.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493479731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.219 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds