Wall clock time and date at job start Tue Mar 31 2020 19:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00202 * 2 1 4 4 C 1.53001 * 109.47089 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47389 * 65.00283 * 4 3 2 6 6 C 1.36781 * 119.99783 * 265.58505 * 5 4 3 7 7 H 1.08002 * 120.00107 * 142.15442 * 6 5 4 8 8 C 1.39068 * 120.00073 * 322.14206 * 6 5 4 9 9 N 1.31364 * 119.99984 * 344.50158 * 8 6 5 10 10 Si 1.86793 * 119.99814 * 164.49280 * 8 6 5 11 11 H 1.48498 * 109.47326 * 90.01049 * 10 8 6 12 12 H 1.48506 * 109.47084 * 210.00519 * 10 8 6 13 13 H 1.48496 * 109.47653 * 330.00270 * 10 8 6 14 14 C 1.34779 * 120.00323 * 85.57581 * 5 4 3 15 15 O 1.21806 * 119.99638 * 4.63843 * 14 5 4 16 16 C 1.41610 * 120.00046 * 184.63013 * 14 5 4 17 17 C 1.35312 * 119.99532 * 172.83739 * 16 14 5 18 18 C 1.46686 * 120.00498 * 346.94237 * 17 16 14 19 19 C 1.40079 * 120.15641 * 316.91711 * 18 17 16 20 20 C 1.36538 * 120.05442 * 179.97438 * 19 18 17 21 21 C 1.39192 * 120.39494 * 0.02562 * 20 19 18 22 22 O 1.35732 * 119.83745 * 179.97438 * 21 20 19 23 23 C 1.42896 * 117.00306 * 359.97438 * 22 21 20 24 24 C 1.38768 * 120.32115 * 359.97438 * 21 20 19 25 25 C 1.38390 * 119.93474 * 359.72189 * 24 21 20 26 26 O 1.35690 * 120.19292 * 180.29559 * 25 24 21 27 27 C 1.42894 * 117.00183 * 0.25966 * 26 25 24 28 28 H 1.09000 * 109.46833 * 59.99874 * 1 2 3 29 29 H 1.09002 * 109.46795 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46974 * 300.00155 * 1 2 3 31 31 H 1.09002 * 109.46943 * 60.00114 * 3 2 1 32 32 H 1.08996 * 109.47096 * 299.99918 * 3 2 1 33 33 H 1.08999 * 109.47279 * 304.99483 * 4 3 2 34 34 H 1.09001 * 109.46870 * 184.99911 * 4 3 2 35 35 H 0.96996 * 120.00115 * 179.97438 * 9 8 6 36 36 H 1.08000 * 120.00203 * 352.56196 * 16 14 5 37 37 H 1.08000 * 119.99903 * 166.94379 * 17 16 14 38 38 H 1.07993 * 119.96986 * 359.97438 * 19 18 17 39 39 H 1.07998 * 119.80317 * 179.97438 * 20 19 18 40 40 H 1.09003 * 109.47547 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.47334 * 299.99895 * 23 22 21 42 42 H 1.08999 * 109.47771 * 60.00087 * 23 22 21 43 43 H 1.07998 * 120.03039 * 180.02562 * 24 21 20 44 44 H 1.08998 * 109.47267 * 299.99468 * 27 26 25 45 45 H 1.09002 * 109.47294 * 59.99769 * 27 26 25 46 46 H 1.08999 * 109.47108 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1847 -0.7867 -1.3082 7 1 3.9116 -1.3379 -2.1959 8 6 4.7479 -1.4503 -0.2235 9 7 5.3552 -0.7680 0.7206 10 14 4.6406 -3.3116 -0.1091 11 1 5.8214 -3.9174 -0.7752 12 1 4.6147 -3.7191 1.3188 13 1 3.4004 -3.7782 -0.7795 14 6 4.1777 1.3238 -2.3457 15 8 4.0746 2.5354 -2.2734 16 6 4.5088 0.7137 -3.5800 17 6 4.5681 1.4583 -4.7082 18 6 4.0196 2.8187 -4.7190 19 6 2.7857 3.0848 -4.1117 20 6 2.2773 4.3519 -4.1225 21 6 2.9781 5.3867 -4.7355 22 8 2.4619 6.6420 -4.7400 23 6 1.1983 6.8262 -4.0988 24 6 4.2018 5.1410 -5.3420 25 6 4.7326 3.8630 -5.3335 26 8 5.9316 3.6182 -5.9197 27 6 6.5971 4.7289 -6.5241 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0902 35 1 5.7477 -1.2308 1.4773 36 1 4.7182 -0.3451 -3.6200 37 1 5.0194 1.0509 -5.6009 38 1 2.2361 2.2870 -3.6345 39 1 1.3255 4.5524 -3.6534 40 1 0.9011 7.8722 -4.1749 41 1 0.4497 6.2000 -4.5842 42 1 1.2796 6.5469 -3.0483 43 1 4.7417 5.9475 -5.8159 44 1 5.9671 5.1465 -7.3094 45 1 6.7904 5.4912 -5.7694 46 1 7.5418 4.3962 -6.9542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493479731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:40 Heat of formation + Delta-G solvation = -99.190358 kcal Electronic energy + Delta-G solvation = -29978.153892 eV Core-core repulsion = 25835.106190 eV Total energy + Delta-G solvation = -4143.047702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.54934 -40.58896 -39.86961 -38.66424 -37.57692 -36.41878 -34.24115 -33.44732 -31.57041 -31.19974 -29.99467 -28.09791 -27.88004 -27.27461 -26.56036 -25.08082 -23.48692 -22.78907 -21.82257 -20.51855 -19.68749 -18.34838 -18.24547 -17.68379 -17.16070 -17.11176 -16.92032 -16.80797 -16.40061 -16.37248 -16.12575 -15.92224 -15.73234 -15.35153 -15.15540 -14.59962 -14.30669 -14.15032 -13.85323 -13.56221 -13.43287 -13.26383 -13.11194 -12.97307 -12.85076 -12.72413 -12.47327 -12.44852 -12.37576 -12.18365 -12.04567 -11.86728 -11.77715 -11.56921 -10.92389 -10.52113 -10.34064 -10.18905 -9.45472 -9.24002 -8.48354 -8.18779 -5.93125 -0.05811 0.58226 1.03147 1.48088 1.51097 1.62070 2.20967 2.36034 2.51062 2.73470 2.92003 3.00733 3.17112 3.34159 3.84751 3.99281 4.10808 4.26213 4.29611 4.30546 4.33982 4.38808 4.42466 4.47418 4.52528 4.54499 4.59016 4.65074 4.66329 4.72036 4.74972 4.76396 4.80505 4.84836 4.95874 5.17718 5.29872 5.40970 5.46214 5.53526 5.60634 5.64995 5.88384 6.09455 6.32733 6.43109 6.51138 6.54437 7.22475 7.72203 8.14456 8.81001 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.003914 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.398512 B = 7152.715101 C = 8682.615160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.069 3.931 4 C 0.110 3.890 5 N -0.432 5.432 6 C -0.325 4.325 7 H 0.092 0.908 8 C 0.003 3.997 9 N -0.899 5.899 10 Si 0.982 3.018 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.263 1.263 14 C 0.481 3.519 15 O -0.618 6.618 16 C -0.204 4.204 17 C -0.028 4.028 18 C -0.138 4.138 19 C 0.035 3.965 20 C -0.257 4.257 21 C 0.164 3.836 22 O -0.328 6.328 23 C 0.019 3.981 24 C -0.263 4.263 25 C 0.170 3.830 26 O -0.325 6.325 27 C 0.018 3.982 28 H 0.040 0.960 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.269 0.731 36 H 0.132 0.868 37 H 0.148 0.852 38 H 0.104 0.896 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.151 0.849 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 9.052 -10.147 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.009 4.009 4 C -0.014 4.014 5 N -0.148 5.148 6 C -0.454 4.454 7 H 0.109 0.891 8 C -0.199 4.199 9 N -0.537 5.537 10 Si 0.807 3.193 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.187 1.187 14 C 0.275 3.725 15 O -0.509 6.509 16 C -0.225 4.225 17 C -0.049 4.049 18 C -0.139 4.139 19 C 0.016 3.984 20 C -0.276 4.276 21 C 0.118 3.882 22 O -0.241 6.241 23 C -0.075 4.075 24 C -0.282 4.282 25 C 0.124 3.876 26 O -0.238 6.238 27 C -0.076 4.076 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.165 0.835 38 H 0.122 0.878 39 H 0.157 0.843 40 H 0.145 0.855 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.169 0.831 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.640 9.405 -9.956 15.220 hybrid contribution -0.193 -0.602 0.817 1.033 sum -6.833 8.803 -9.139 14.412 Atomic orbital electron populations 1.22884 0.80705 1.03311 1.00216 1.88077 1.20396 1.27793 1.95282 1.22768 0.94382 0.84528 0.99195 1.21404 0.91341 0.97684 0.91020 1.43540 1.55393 1.07136 1.08695 1.19554 1.39521 0.82583 1.03712 0.89064 1.26130 0.93738 1.04053 0.95967 1.69911 1.33736 1.38002 1.12063 0.85101 0.78882 0.77969 0.77398 1.19798 1.20969 1.18743 1.17709 0.81319 0.86624 0.86832 1.90685 1.58932 1.14451 1.86793 1.22165 1.06653 1.00980 0.92685 1.22206 0.93608 0.91599 0.97481 1.18259 0.96584 0.93300 1.05807 1.20333 0.92807 0.96219 0.89040 1.20803 1.03784 0.93187 1.09813 1.18833 0.92216 0.83703 0.93476 1.85947 1.38150 1.25690 1.74321 1.23341 0.82152 1.04869 0.97110 1.20309 0.98273 0.96759 1.12875 1.18762 0.85032 0.92182 0.91655 1.86010 1.30249 1.38286 1.69265 1.23369 0.98088 0.88612 0.97542 0.94144 0.88866 0.93092 0.91946 0.94945 0.88401 0.92926 0.92125 0.85060 0.83457 0.87790 0.84345 0.85541 0.91553 0.92783 0.83120 0.91071 0.92529 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -16.72 10.39 -148.98 -1.55 -18.27 16 3 C 0.07 2.88 6.25 71.98 0.45 3.33 16 4 C 0.11 5.48 5.33 86.38 0.46 5.94 16 5 N -0.43 -22.51 2.49 -645.60 -1.60 -24.12 16 6 C -0.33 -17.01 8.21 84.12 0.69 -16.32 16 7 H 0.09 4.58 6.68 -2.91 -0.02 4.56 16 8 C 0.00 0.14 5.06 84.96 0.43 0.58 16 9 N -0.90 -49.33 11.17 21.68 0.24 -49.09 16 10 Si 0.98 41.32 29.58 68.60 2.03 43.35 16 11 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 12 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 14 C 0.48 24.24 6.40 85.07 0.54 24.79 16 15 O -0.62 -32.40 11.84 -4.69 -0.06 -32.46 16 16 C -0.20 -8.97 8.98 22.43 0.20 -8.77 16 17 C -0.03 -1.07 9.35 23.80 0.22 -0.85 16 18 C -0.14 -5.39 4.47 -20.05 -0.09 -5.47 16 19 C 0.03 1.34 6.65 22.32 0.15 1.49 16 20 C -0.26 -8.64 8.96 22.10 0.20 -8.44 16 21 C 0.16 5.25 6.69 22.63 0.15 5.40 16 22 O -0.33 -8.92 10.48 -90.55 -0.95 -9.87 16 23 C 0.02 0.36 9.80 113.37 1.11 1.47 16 24 C -0.26 -8.34 8.97 22.43 0.20 -8.14 16 25 C 0.17 5.95 6.70 22.88 0.15 6.11 16 26 O -0.32 -10.11 9.95 -90.08 -0.90 -11.01 16 27 C 0.02 0.36 9.81 113.37 1.11 1.48 16 28 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 5.31 5.36 -2.39 -0.01 5.29 16 34 H 0.05 2.72 7.49 -2.39 -0.02 2.70 16 35 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 36 H 0.13 5.55 6.41 -2.91 -0.02 5.53 16 37 H 0.15 4.68 8.06 -2.91 -0.02 4.65 16 38 H 0.10 4.26 7.07 -2.91 -0.02 4.24 16 39 H 0.14 3.95 6.26 -2.91 -0.02 3.93 16 40 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.09 7.65 -2.39 -0.02 1.07 16 42 H 0.05 1.05 7.65 -2.39 -0.02 1.03 16 43 H 0.15 3.94 6.31 -2.91 -0.02 3.92 16 44 H 0.07 1.18 7.65 -2.39 -0.02 1.16 16 45 H 0.06 1.12 7.68 -2.39 -0.02 1.10 16 46 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -69.78 379.43 5.44 -64.34 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.99 Total: 32.55 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 7.23 Total: 4.57 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -1.36 Total: -73.21 kcal Atomic # 8 Polarization: -68.16 SS G_CDS: -3.45 Total: -71.60 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -69.78 5.44 -64.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493479731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.850 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds