Wall clock time and date at job start Tue Mar 31 2020 19:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00219 * 2 1 4 4 C 1.53005 * 109.47119 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47008 * 65.52936 * 4 3 2 6 6 C 1.36743 * 119.99670 * 263.75273 * 5 4 3 7 7 H 1.08002 * 119.99439 * 142.77458 * 6 5 4 8 8 C 1.39093 * 120.00362 * 322.77147 * 6 5 4 9 9 N 1.31348 * 119.99771 * 160.71786 * 8 6 5 10 10 Si 1.86797 * 120.00029 * 340.71929 * 8 6 5 11 11 H 1.48505 * 109.46958 * 91.71125 * 10 8 6 12 12 H 1.48497 * 109.47237 * 211.71202 * 10 8 6 13 13 H 1.48504 * 109.47233 * 331.71675 * 10 8 6 14 14 C 1.34776 * 119.99865 * 83.75924 * 5 4 3 15 15 O 1.21778 * 120.00097 * 5.03309 * 14 5 4 16 16 C 1.41796 * 119.99855 * 185.03515 * 14 5 4 17 17 C 1.35139 * 120.00509 * 185.17067 * 16 14 5 18 18 C 1.46943 * 120.00458 * 180.02562 * 17 16 14 19 19 C 1.39987 * 120.09835 * 0.02562 * 18 17 16 20 20 C 1.37736 * 119.97347 * 180.02562 * 19 18 17 21 21 C 1.38866 * 120.17906 * 0.02562 * 20 19 18 22 22 O 1.35825 * 119.90530 * 179.97438 * 21 20 19 23 23 C 1.42906 * 116.99848 * 0.02562 * 22 21 20 24 24 C 1.39448 * 120.19654 * 359.95864 * 21 20 19 25 25 O 1.36002 * 119.98943 * 179.97438 * 24 21 20 26 26 C 1.42900 * 116.99941 * 180.02562 * 25 24 21 27 27 C 1.38089 * 120.02694 * 359.76444 * 24 21 20 28 28 H 1.08991 * 109.47475 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47304 * 300.00628 * 1 2 3 30 30 H 1.09007 * 109.46839 * 59.99809 * 1 2 3 31 31 H 1.08997 * 109.47599 * 59.99809 * 3 2 1 32 32 H 1.08998 * 109.47141 * 299.99796 * 3 2 1 33 33 H 1.08997 * 109.46797 * 305.52723 * 4 3 2 34 34 H 1.08999 * 109.46895 * 185.52981 * 4 3 2 35 35 H 0.97003 * 119.99605 * 180.02562 * 9 8 6 36 36 H 1.08004 * 120.00200 * 5.17898 * 16 14 5 37 37 H 1.08004 * 119.99291 * 0.02562 * 17 16 14 38 38 H 1.07998 * 120.01049 * 359.97438 * 19 18 17 39 39 H 1.08003 * 119.91310 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.46686 * 300.00082 * 23 22 21 41 41 H 1.08997 * 109.47259 * 59.99591 * 23 22 21 42 42 H 1.08999 * 109.47105 * 180.02562 * 23 22 21 43 43 H 1.08997 * 109.46979 * 60.00123 * 26 25 24 44 44 H 1.09005 * 109.46889 * 179.97438 * 26 25 24 45 45 H 1.08999 * 109.47347 * 300.00098 * 26 25 24 46 46 H 1.08000 * 120.09336 * 180.25742 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9776 0.5754 -1.2562 6 6 4.2216 -0.7688 -1.3158 7 1 3.9615 -1.3259 -2.2037 8 6 4.8046 -1.4186 -0.2329 9 7 4.7005 -2.7226 -0.1158 10 14 5.7358 -0.4365 1.0547 11 1 4.8090 -0.0514 2.1492 12 1 6.8377 -1.2644 1.6074 13 1 6.3007 0.7871 0.4310 14 6 4.1440 1.3398 -2.3537 15 8 4.0161 2.5486 -2.2789 16 6 4.4678 0.7367 -3.5954 17 6 4.7373 1.5083 -4.6716 18 6 5.0724 0.8832 -5.9586 19 6 5.1126 -0.5115 -6.0722 20 6 5.4275 -1.0947 -7.2797 21 6 5.7061 -0.3028 -8.3858 22 8 6.0165 -0.8838 -9.5737 23 6 6.0369 -2.3122 -9.6115 24 6 5.6679 1.0872 -8.2809 25 8 5.9420 1.8587 -9.3668 26 6 5.8849 3.2753 -9.1873 27 6 5.3475 1.6806 -7.0758 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8501 0.5607 0.8372 34 1 3.9784 2.1755 0.0997 35 1 5.1068 -3.1757 0.6396 36 1 4.4991 -0.3395 -3.6812 37 1 4.7063 2.5844 -4.5858 38 1 4.8976 -1.1299 -5.2133 39 1 5.4586 -2.1708 -7.3662 40 1 6.7758 -2.6839 -8.9016 41 1 5.0522 -2.6968 -9.3458 42 1 6.2986 -2.6453 -10.6158 43 1 6.6054 3.5744 -8.4261 44 1 6.1242 3.7707 -10.1283 45 1 4.8819 3.5612 -8.8705 46 1 5.3135 2.7570 -6.9944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493488303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:54 Heat of formation + Delta-G solvation = -83.371019 kcal Electronic energy + Delta-G solvation = -28719.447607 eV Core-core repulsion = 24577.085884 eV Total energy + Delta-G solvation = -4142.361724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.49065 -39.17675 -38.46351 -37.32501 -36.92174 -34.93609 -32.93146 -32.01786 -30.41457 -30.03317 -29.00241 -27.31524 -26.95532 -25.88644 -24.96510 -23.72985 -22.43057 -21.95779 -20.34355 -18.76164 -18.40427 -17.26601 -17.00872 -16.51327 -16.10046 -16.08841 -15.84644 -15.59478 -15.28827 -14.79403 -14.72218 -14.58989 -14.49963 -14.21759 -13.81118 -13.63240 -13.14184 -12.78827 -12.71251 -12.52789 -12.28332 -12.05514 -11.90865 -11.72594 -11.67896 -11.44609 -11.27984 -11.22557 -11.20420 -10.94429 -10.83550 -10.65041 -10.08333 -9.91007 -9.35096 -9.25866 -9.12477 -8.64778 -8.47644 -7.86299 -7.36512 -6.47951 -4.01083 0.90071 1.43919 2.40506 3.04890 3.21038 3.23514 3.25297 3.26980 3.85945 4.10492 4.25821 4.41067 4.44064 4.78475 4.89257 4.96896 5.03048 5.08646 5.10605 5.15823 5.19820 5.33878 5.39701 5.43012 5.44886 5.57090 5.64927 5.66918 5.76606 5.82242 5.89312 5.93086 6.01221 6.10203 6.21381 6.28279 6.40268 6.47181 6.53480 6.72086 6.98109 7.05735 7.11900 7.31326 7.57690 7.75196 8.04821 8.20860 8.93349 9.31907 9.64774 10.62298 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.002870 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.367811 B = 9752.067963 C =10359.225395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.055 3.945 4 C 0.094 3.906 5 N -0.439 5.439 6 C -0.329 4.329 7 H 0.106 0.894 8 C 0.071 3.929 9 N -0.853 5.853 10 Si 0.876 3.124 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.261 1.261 14 C 0.494 3.506 15 O -0.612 6.612 16 C -0.142 4.142 17 C -0.081 4.081 18 C -0.043 4.043 19 C -0.102 4.102 20 C -0.169 4.169 21 C 0.092 3.908 22 O -0.309 6.309 23 C 0.026 3.974 24 C 0.095 3.905 25 O -0.310 6.310 26 C 0.026 3.974 27 C -0.162 4.162 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.275 0.725 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 4.046 -12.286 12.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C -0.022 4.022 4 C -0.029 4.029 5 N -0.157 5.157 6 C -0.456 4.456 7 H 0.124 0.876 8 C -0.137 4.137 9 N -0.487 5.487 10 Si 0.703 3.297 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.185 1.185 14 C 0.289 3.711 15 O -0.501 6.501 16 C -0.162 4.162 17 C -0.103 4.103 18 C -0.044 4.044 19 C -0.120 4.120 20 C -0.188 4.188 21 C 0.047 3.953 22 O -0.223 6.223 23 C -0.069 4.069 24 C 0.050 3.950 25 O -0.224 6.224 26 C -0.069 4.069 27 C -0.181 4.181 28 H 0.100 0.900 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.115 0.885 45 H 0.073 0.927 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.256 4.266 -12.460 13.173 hybrid contribution 0.103 0.347 1.211 1.264 sum -0.153 4.613 -11.249 12.159 Atomic orbital electron populations 1.22663 0.82876 1.02131 0.98841 1.88184 1.17839 1.26784 1.95054 1.22852 0.94747 0.85146 0.99489 1.21820 0.92384 0.99326 0.89352 1.43622 1.55879 1.08347 1.07823 1.18998 1.40387 0.80968 1.05236 0.87633 1.25285 0.95851 0.95248 0.97334 1.69704 1.40291 1.08447 1.30302 0.87012 0.79920 0.80962 0.81759 1.19958 1.21416 1.18532 1.17082 0.82114 0.86175 0.85779 1.90661 1.58210 1.14240 1.86962 1.22320 0.99609 1.01385 0.92911 1.22072 0.98106 0.99779 0.90300 1.18818 0.99755 0.92701 0.93111 1.21297 0.99112 0.94187 0.97450 1.21000 1.05644 0.99784 0.92384 1.18359 1.01710 0.89254 0.85998 1.86094 1.85115 1.21551 1.29530 1.23054 1.01549 0.78816 1.03487 1.18049 1.01928 0.87899 0.87151 1.86140 1.85664 1.17977 1.32621 1.23047 1.01546 0.78984 1.03350 1.21208 1.05371 1.00238 0.91288 0.90046 0.95100 0.94837 0.93756 0.93135 0.90182 0.89758 0.91454 0.84865 0.85469 0.84348 0.84620 0.92634 0.92659 0.88471 0.92660 0.88455 0.92674 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.63 10.50 -35.23 -0.37 -8.00 16 3 C 0.06 1.10 6.23 37.16 0.23 1.33 16 4 C 0.09 2.10 4.31 -4.04 -0.02 2.09 16 5 N -0.44 -10.63 2.16 -118.00 -0.26 -10.88 16 6 C -0.33 -8.46 8.89 -15.04 -0.13 -8.60 16 7 H 0.11 2.81 6.66 -52.49 -0.35 2.46 16 8 C 0.07 1.85 5.33 -17.44 -0.09 1.76 16 9 N -0.85 -23.23 13.95 55.50 0.77 -22.45 16 10 Si 0.88 20.38 24.95 -169.99 -4.24 16.14 16 11 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 14 C 0.49 11.64 7.35 -14.90 -0.11 11.53 16 15 O -0.61 -15.20 15.77 5.12 0.08 -15.12 16 16 C -0.14 -2.90 8.53 -39.33 -0.34 -3.24 16 17 C -0.08 -1.45 9.41 -37.16 -0.35 -1.80 16 18 C -0.04 -0.69 5.87 -105.06 -0.62 -1.30 16 19 C -0.10 -1.55 9.40 -39.11 -0.37 -1.91 16 20 C -0.17 -2.29 9.01 -39.53 -0.36 -2.65 16 21 C 0.09 1.33 6.71 -38.90 -0.26 1.07 16 22 O -0.31 -4.16 10.27 -33.87 -0.35 -4.51 16 23 C 0.03 0.23 9.81 101.05 0.99 1.23 16 24 C 0.09 1.38 6.69 -39.19 -0.26 1.12 16 25 O -0.31 -4.22 10.27 -34.42 -0.35 -4.57 16 26 C 0.03 0.24 9.81 101.05 0.99 1.23 16 27 C -0.16 -2.30 8.78 -38.98 -0.34 -2.64 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.84 3.22 -51.93 -0.17 1.68 16 34 H 0.08 1.80 7.55 -51.93 -0.39 1.40 16 35 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.13 2.66 4.30 -52.48 -0.23 2.43 16 37 H 0.13 2.27 7.46 -52.48 -0.39 1.87 16 38 H 0.14 2.09 6.15 -52.49 -0.32 1.76 16 39 H 0.14 1.49 6.27 -52.48 -0.33 1.16 16 40 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 41 H 0.05 0.44 7.65 -51.93 -0.40 0.05 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.46 7.65 -51.93 -0.40 0.07 16 46 H 0.14 1.64 6.28 -52.49 -0.33 1.31 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -32.20 379.58 -5.13 -37.33 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.22 Total: 5.52 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 0.08 Total: 0.82 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.52 Total: -33.33 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.99 Total: -32.19 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.24 Total: 16.14 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.20 -5.13 -37.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493488303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.036 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds