Wall clock time and date at job start Tue Mar 31 2020 19:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00219 * 2 1 4 4 C 1.53005 * 109.47119 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47008 * 65.52936 * 4 3 2 6 6 C 1.36743 * 119.99670 * 263.75273 * 5 4 3 7 7 H 1.08002 * 119.99439 * 142.77458 * 6 5 4 8 8 C 1.39093 * 120.00362 * 322.77147 * 6 5 4 9 9 N 1.31348 * 119.99771 * 160.71786 * 8 6 5 10 10 Si 1.86797 * 120.00029 * 340.71929 * 8 6 5 11 11 H 1.48505 * 109.46958 * 91.71125 * 10 8 6 12 12 H 1.48497 * 109.47237 * 211.71202 * 10 8 6 13 13 H 1.48504 * 109.47233 * 331.71675 * 10 8 6 14 14 C 1.34776 * 119.99865 * 83.75924 * 5 4 3 15 15 O 1.21778 * 120.00097 * 5.03309 * 14 5 4 16 16 C 1.41796 * 119.99855 * 185.03515 * 14 5 4 17 17 C 1.35139 * 120.00509 * 185.17067 * 16 14 5 18 18 C 1.46943 * 120.00458 * 180.02562 * 17 16 14 19 19 C 1.39987 * 120.09835 * 0.02562 * 18 17 16 20 20 C 1.37736 * 119.97347 * 180.02562 * 19 18 17 21 21 C 1.38866 * 120.17906 * 0.02562 * 20 19 18 22 22 O 1.35825 * 119.90530 * 179.97438 * 21 20 19 23 23 C 1.42906 * 116.99848 * 0.02562 * 22 21 20 24 24 C 1.39448 * 120.19654 * 359.95864 * 21 20 19 25 25 O 1.36002 * 119.98943 * 179.97438 * 24 21 20 26 26 C 1.42900 * 116.99941 * 180.02562 * 25 24 21 27 27 C 1.38089 * 120.02694 * 359.76444 * 24 21 20 28 28 H 1.08991 * 109.47475 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47304 * 300.00628 * 1 2 3 30 30 H 1.09007 * 109.46839 * 59.99809 * 1 2 3 31 31 H 1.08997 * 109.47599 * 59.99809 * 3 2 1 32 32 H 1.08998 * 109.47141 * 299.99796 * 3 2 1 33 33 H 1.08997 * 109.46797 * 305.52723 * 4 3 2 34 34 H 1.08999 * 109.46895 * 185.52981 * 4 3 2 35 35 H 0.97003 * 119.99605 * 180.02562 * 9 8 6 36 36 H 1.08004 * 120.00200 * 5.17898 * 16 14 5 37 37 H 1.08004 * 119.99291 * 0.02562 * 17 16 14 38 38 H 1.07998 * 120.01049 * 359.97438 * 19 18 17 39 39 H 1.08003 * 119.91310 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.46686 * 300.00082 * 23 22 21 41 41 H 1.08997 * 109.47259 * 59.99591 * 23 22 21 42 42 H 1.08999 * 109.47105 * 180.02562 * 23 22 21 43 43 H 1.08997 * 109.46979 * 60.00123 * 26 25 24 44 44 H 1.09005 * 109.46889 * 179.97438 * 26 25 24 45 45 H 1.08999 * 109.47347 * 300.00098 * 26 25 24 46 46 H 1.08000 * 120.09336 * 180.25742 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9776 0.5754 -1.2562 6 6 4.2216 -0.7688 -1.3158 7 1 3.9615 -1.3259 -2.2037 8 6 4.8046 -1.4186 -0.2329 9 7 4.7005 -2.7226 -0.1158 10 14 5.7358 -0.4365 1.0547 11 1 4.8090 -0.0514 2.1492 12 1 6.8377 -1.2644 1.6074 13 1 6.3007 0.7871 0.4310 14 6 4.1440 1.3398 -2.3537 15 8 4.0161 2.5486 -2.2789 16 6 4.4678 0.7367 -3.5954 17 6 4.7373 1.5083 -4.6716 18 6 5.0724 0.8832 -5.9586 19 6 5.1126 -0.5115 -6.0722 20 6 5.4275 -1.0947 -7.2797 21 6 5.7061 -0.3028 -8.3858 22 8 6.0165 -0.8838 -9.5737 23 6 6.0369 -2.3122 -9.6115 24 6 5.6679 1.0872 -8.2809 25 8 5.9420 1.8587 -9.3668 26 6 5.8849 3.2753 -9.1873 27 6 5.3475 1.6806 -7.0758 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8501 0.5607 0.8372 34 1 3.9784 2.1755 0.0997 35 1 5.1068 -3.1757 0.6396 36 1 4.4991 -0.3395 -3.6812 37 1 4.7063 2.5844 -4.5858 38 1 4.8976 -1.1299 -5.2133 39 1 5.4586 -2.1708 -7.3662 40 1 6.7758 -2.6839 -8.9016 41 1 5.0522 -2.6968 -9.3458 42 1 6.2986 -2.6453 -10.6158 43 1 6.6054 3.5744 -8.4261 44 1 6.1242 3.7707 -10.1283 45 1 4.8819 3.5612 -8.8705 46 1 5.3135 2.7570 -6.9944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493488303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:53 Heat of formation + Delta-G solvation = -104.026981 kcal Electronic energy + Delta-G solvation = -28720.343317 eV Core-core repulsion = 24577.085884 eV Total energy + Delta-G solvation = -4143.257434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56762 -40.93434 -39.43414 -38.75515 -38.18386 -36.74911 -34.36340 -33.93754 -31.65140 -31.36232 -30.26665 -28.07742 -28.02311 -27.26494 -26.77142 -25.19649 -23.83384 -23.07081 -21.76964 -20.49911 -19.49055 -18.79288 -18.44721 -17.87214 -17.52353 -17.36136 -17.09540 -17.03262 -16.34338 -16.23427 -16.13843 -15.86394 -15.72914 -15.41366 -15.37643 -15.20239 -14.54131 -14.43450 -14.00936 -13.75428 -13.60090 -13.42703 -13.21635 -13.15686 -13.07242 -12.79163 -12.54441 -12.37866 -12.34870 -12.18513 -12.06794 -12.00702 -11.84038 -11.69600 -11.11614 -10.68093 -10.63900 -10.44883 -9.77719 -9.58928 -8.60020 -8.45273 -6.01644 -0.42996 0.31835 0.99996 1.21596 1.34018 1.41869 2.20299 2.30683 2.33769 2.41517 2.64343 2.84087 2.92256 3.17506 3.71690 3.75294 3.98904 4.05979 4.13408 4.14551 4.27621 4.31347 4.36802 4.42329 4.42962 4.43487 4.46646 4.47158 4.53514 4.56087 4.63666 4.70891 4.75061 4.76928 4.77572 4.83400 5.04080 5.12093 5.26118 5.40217 5.53062 5.60042 5.72937 6.07285 6.08971 6.25380 6.36687 6.56768 6.99095 7.42718 7.77729 8.68597 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.002870 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.367811 B = 9752.067963 C =10359.225395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.061 3.939 4 C 0.085 3.915 5 N -0.454 5.454 6 C -0.324 4.324 7 H 0.084 0.916 8 C 0.034 3.966 9 N -0.893 5.893 10 Si 0.923 3.077 11 H -0.257 1.257 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.498 3.502 15 O -0.629 6.629 16 C -0.189 4.189 17 C -0.033 4.033 18 C -0.073 4.073 19 C -0.104 4.104 20 C -0.170 4.170 21 C 0.095 3.905 22 O -0.324 6.324 23 C 0.015 3.985 24 C 0.083 3.917 25 O -0.325 6.325 26 C 0.016 3.984 27 C -0.150 4.150 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.278 0.722 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.160 0.840 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.121 0.879 43 H 0.063 0.937 44 H 0.121 0.879 45 H 0.063 0.937 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.363 5.099 -13.594 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.016 4.016 4 C -0.037 4.037 5 N -0.172 5.172 6 C -0.452 4.452 7 H 0.101 0.899 8 C -0.171 4.171 9 N -0.530 5.530 10 Si 0.749 3.251 11 H -0.183 1.183 12 H -0.211 1.211 13 H -0.193 1.193 14 C 0.293 3.707 15 O -0.519 6.519 16 C -0.209 4.209 17 C -0.054 4.054 18 C -0.073 4.073 19 C -0.123 4.123 20 C -0.188 4.188 21 C 0.049 3.951 22 O -0.238 6.238 23 C -0.079 4.079 24 C 0.038 3.962 25 O -0.240 6.240 26 C -0.079 4.079 27 C -0.168 4.168 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.178 0.822 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.140 0.860 45 H 0.082 0.918 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.190 5.324 -13.777 14.771 hybrid contribution 0.084 0.089 1.234 1.240 sum -0.106 5.413 -12.543 13.662 Atomic orbital electron populations 1.22876 0.80341 1.03257 1.00479 1.88119 1.20764 1.27623 1.95374 1.22788 0.93065 0.85065 1.00721 1.21961 0.94415 0.99101 0.88268 1.43650 1.57087 1.07790 1.08710 1.18813 1.40217 0.81636 1.04561 0.89862 1.25771 0.96433 0.95849 0.99023 1.69771 1.42069 1.09626 1.31506 0.86250 0.79094 0.79421 0.80305 1.18344 1.21056 1.19288 1.17493 0.80800 0.85985 0.86409 1.90624 1.59007 1.14879 1.87417 1.22110 1.04516 1.01492 0.92790 1.22232 0.93233 0.99653 0.90292 1.18766 1.02564 0.93247 0.92769 1.21367 0.98841 0.94090 0.97966 1.21193 1.05090 1.01073 0.91479 1.18630 1.00298 0.89662 0.86474 1.86088 1.84653 1.24030 1.29010 1.23395 1.02564 0.76517 1.05415 1.18231 1.02024 0.88433 0.87544 1.86130 1.85513 1.19972 1.32348 1.23369 1.02408 0.76902 1.05188 1.21361 1.03767 1.01184 0.90526 0.89298 0.92470 0.94057 0.90269 0.93909 0.91012 0.89188 0.91234 0.85197 0.85152 0.85008 0.82219 0.91727 0.91631 0.86074 0.91878 0.86038 0.91801 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -16.82 10.50 -148.98 -1.56 -18.38 16 3 C 0.06 2.38 6.23 71.98 0.45 2.82 16 4 C 0.09 3.79 4.31 86.38 0.37 4.17 16 5 N -0.45 -22.40 2.16 -645.43 -1.40 -23.80 16 6 C -0.32 -17.28 8.89 84.13 0.75 -16.53 16 7 H 0.08 4.69 6.66 -2.91 -0.02 4.67 16 8 C 0.03 1.80 5.33 84.97 0.45 2.25 16 9 N -0.89 -49.97 13.95 21.69 0.30 -49.67 16 10 Si 0.92 42.37 24.95 68.60 1.71 44.09 16 11 H -0.26 -11.07 6.54 99.48 0.65 -10.42 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 14 C 0.50 23.85 7.35 85.12 0.63 24.48 16 15 O -0.63 -31.34 15.77 -4.60 -0.07 -31.41 16 16 C -0.19 -7.91 8.53 22.44 0.19 -7.72 16 17 C -0.03 -1.17 9.41 23.84 0.22 -0.95 16 18 C -0.07 -2.25 5.87 -20.15 -0.12 -2.37 16 19 C -0.10 -3.12 9.40 22.58 0.21 -2.90 16 20 C -0.17 -4.36 9.01 22.30 0.20 -4.16 16 21 C 0.10 2.58 6.71 22.71 0.15 2.73 16 22 O -0.32 -8.05 10.27 -77.55 -0.80 -8.84 16 23 C 0.02 0.23 9.81 113.37 1.11 1.35 16 24 C 0.08 2.27 6.69 22.53 0.15 2.42 16 25 O -0.33 -8.17 10.27 -79.54 -0.82 -8.99 16 26 C 0.02 0.25 9.81 113.37 1.11 1.36 16 27 C -0.15 -3.98 8.78 22.66 0.20 -3.79 16 28 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 3.28 3.22 -2.39 -0.01 3.27 16 34 H 0.09 3.80 7.55 -2.39 -0.02 3.79 16 35 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.13 5.47 4.30 -2.91 -0.01 5.46 16 37 H 0.13 4.52 7.46 -2.91 -0.02 4.49 16 38 H 0.13 4.09 6.15 -2.91 -0.02 4.07 16 39 H 0.16 3.20 6.27 -2.91 -0.02 3.19 16 40 H 0.06 0.89 7.65 -2.38 -0.02 0.87 16 41 H 0.07 0.89 7.65 -2.39 -0.02 0.87 16 42 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 0.91 7.67 -2.39 -0.02 0.89 16 44 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.06 0.91 7.65 -2.39 -0.02 0.89 16 46 H 0.16 3.39 6.28 -2.91 -0.02 3.37 16 Total: -1.00 -70.32 379.58 5.65 -64.67 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.95 Total: 27.12 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 7.33 Total: 5.21 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -1.09 Total: -73.47 kcal Atomic # 8 Polarization: -64.37 SS G_CDS: -3.25 Total: -67.62 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.71 Total: 44.09 kcal Total: -70.32 5.65 -64.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493488303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.357 kcal (2) G-P(sol) polarization free energy of solvation -70.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds