Wall clock time and date at job start Tue Mar 31 2020 18:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35958 * 116.99830 * 2 1 4 4 C 1.38073 * 120.00067 * 0.23173 * 3 2 1 5 5 C 1.39978 * 119.83641 * 180.27672 * 4 3 2 6 6 C 1.46960 * 120.08076 * 179.76755 * 5 4 3 7 7 C 1.35027 * 120.00030 * 315.84663 * 6 5 4 8 8 C 1.46254 * 120.00175 * 348.78544 * 7 6 5 9 9 O 1.21731 * 119.99655 * 353.22888 * 8 7 6 10 10 N 1.34775 * 120.00270 * 172.94987 * 8 7 6 11 11 C 1.46496 * 119.99971 * 0.27606 * 10 8 7 12 12 C 1.46498 * 120.00094 * 180.28113 * 10 8 7 13 13 C 1.52995 * 109.47666 * 89.99733 * 12 10 8 14 14 C 1.52996 * 109.47506 * 180.02562 * 13 12 10 15 15 O 1.42902 * 109.47385 * 180.02562 * 14 13 12 16 16 C 1.40032 * 119.84265 * 359.49317 * 5 4 3 17 17 C 1.37646 * 119.99988 * 0.25136 * 16 5 4 18 18 C 1.39062 * 120.15907 * 0.02562 * 17 16 5 19 19 O 1.35614 * 119.91936 * 180.02562 * 18 17 16 20 20 C 1.34765 * 117.00055 * 354.29067 * 19 18 17 21 21 H 1.07999 * 120.00265 * 5.05701 * 20 19 18 22 22 C 1.38707 * 120.00001 * 185.06435 * 20 19 18 23 23 N 1.31526 * 120.00166 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99962 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46809 * 59.99881 * 24 22 20 26 26 H 1.48503 * 109.47075 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46853 * 299.99791 * 24 22 20 28 28 H 1.09012 * 109.47228 * 300.00144 * 1 2 3 29 29 H 1.08998 * 109.47564 * 60.00053 * 1 2 3 30 30 H 1.08997 * 109.47595 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.08633 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.00188 * 135.84688 * 6 5 4 33 33 H 1.07997 * 120.00018 * 168.78490 * 7 6 5 34 34 H 1.09002 * 109.47259 * 89.99879 * 11 10 8 35 35 H 1.09002 * 109.47506 * 210.00163 * 11 10 8 36 36 H 1.09000 * 109.47167 * 330.00170 * 11 10 8 37 37 H 1.09004 * 109.47035 * 210.00416 * 12 10 8 38 38 H 1.09011 * 109.46939 * 329.99523 * 12 10 8 39 39 H 1.09006 * 109.46939 * 300.00328 * 13 12 10 40 40 H 1.09005 * 109.46749 * 59.99725 * 13 12 10 41 41 H 1.09006 * 109.47149 * 300.00028 * 14 13 12 42 42 H 1.08998 * 109.47338 * 59.99635 * 14 13 12 43 43 H 0.96699 * 113.99488 * 179.97438 * 15 14 13 44 44 H 1.07998 * 120.00475 * 180.22840 * 16 5 4 45 45 H 1.07996 * 119.92266 * 180.02562 * 17 16 5 46 46 H 0.96994 * 119.99697 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 0.0048 5 6 1.9332 3.6148 -0.0010 6 6 1.1380 4.8507 -0.0011 7 6 0.0638 4.9623 -0.8116 8 6 -0.1687 3.9680 -1.8587 9 8 0.6671 3.1114 -2.0810 10 7 -1.3109 3.9967 -2.5736 11 6 -2.3168 5.0276 -2.3060 12 6 -1.5465 2.9970 -3.6182 13 6 -2.2567 1.7845 -3.0130 14 6 -2.5022 0.7402 -4.1039 15 8 -3.1660 -0.3920 -3.5388 16 6 3.3320 3.6803 -0.0011 17 6 4.0752 2.5218 -0.0005 18 6 3.4405 1.2845 -0.0005 19 8 4.1775 0.1461 0.0005 20 6 5.5130 0.2818 -0.1179 21 1 5.9572 1.2662 -0.1259 22 6 6.3172 -0.8428 -0.2298 23 7 5.7763 -2.0416 -0.2207 24 14 8.1684 -0.6546 -0.3947 25 1 8.7024 0.0512 0.7978 26 1 8.7952 -1.9969 -0.4980 27 1 8.4792 0.1315 -1.6156 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.2156 2.3145 0.0090 32 1 1.4128 5.6696 0.6471 33 1 -0.6236 5.7858 -0.6867 34 1 -2.1188 5.8992 -2.9299 35 1 -3.3082 4.6356 -2.5334 36 1 -2.2720 5.3150 -1.2555 37 1 -2.1694 3.4296 -4.4012 38 1 -0.5928 2.6845 -4.0438 39 1 -1.6337 1.3520 -2.2301 40 1 -3.2103 2.0971 -2.5875 41 1 -3.1249 1.1725 -4.8872 42 1 -1.5484 0.4278 -4.5291 43 1 -3.3543 -1.0955 -4.1750 44 1 3.8277 4.6398 -0.0019 45 1 5.1539 2.5737 -0.0001 46 1 6.3388 -2.8280 -0.2986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493497853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:20 Heat of formation + Delta-G solvation = -84.024157 kcal Electronic energy + Delta-G solvation = -29634.165864 eV Core-core repulsion = 25491.775818 eV Total energy + Delta-G solvation = -4142.390046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.07008 -39.19974 -37.38998 -37.33196 -36.37745 -35.35898 -33.12751 -32.32815 -31.86810 -29.33477 -28.41023 -27.19425 -26.63074 -25.67969 -25.18904 -22.85431 -21.72417 -21.33261 -20.57803 -18.57855 -17.97823 -17.63380 -17.45775 -16.84908 -16.08443 -15.97638 -15.52168 -15.16762 -15.05152 -14.93401 -14.49429 -14.04602 -13.89475 -13.80971 -13.42239 -13.32390 -13.10468 -13.06073 -12.84693 -12.75901 -12.44339 -12.27345 -12.04747 -11.65279 -11.51299 -11.37779 -11.19414 -11.09323 -10.96510 -10.84934 -10.56613 -10.42706 -10.25593 -10.11582 -9.45569 -9.39143 -9.16698 -8.67692 -8.64060 -7.44793 -6.69698 -6.39484 -3.92531 1.20131 2.43108 2.64773 3.02263 3.16609 3.19364 3.20929 3.58381 4.00606 4.11545 4.20716 4.62796 4.67068 4.87891 4.94078 5.02373 5.08525 5.11728 5.14462 5.21916 5.27442 5.30281 5.44957 5.47237 5.50873 5.58365 5.65478 5.69392 5.79869 5.84403 5.94678 5.98471 6.17095 6.28091 6.31843 6.45965 6.58515 6.60759 6.76242 7.07548 7.22862 7.31891 7.43583 7.44150 7.50110 7.75250 8.02187 8.35367 8.48582 9.04415 9.77913 10.77544 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.003452 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.649147 B = 8110.009211 C = 9486.715762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.304 6.304 3 C 0.046 3.954 4 C -0.080 4.080 5 C -0.157 4.157 6 C 0.027 3.973 7 C -0.267 4.267 8 C 0.538 3.462 9 O -0.505 6.505 10 N -0.624 5.624 11 C 0.082 3.918 12 C 0.121 3.879 13 C -0.137 4.137 14 C 0.079 3.921 15 O -0.574 6.574 16 C -0.065 4.065 17 C -0.230 4.230 18 C 0.152 3.848 19 O -0.158 6.158 20 C -0.390 4.390 21 H 0.093 0.907 22 C 0.040 3.960 23 N -0.854 5.854 24 Si 0.942 3.058 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.269 1.269 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.379 0.621 44 H 0.108 0.892 45 H 0.133 0.867 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.184 12.923 -5.123 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.218 6.218 3 C 0.001 3.999 4 C -0.099 4.099 5 C -0.158 4.158 6 C 0.007 3.993 7 C -0.288 4.288 8 C 0.329 3.671 9 O -0.380 6.380 10 N -0.359 5.359 11 C -0.062 4.062 12 C -0.002 4.002 13 C -0.175 4.175 14 C 0.001 3.999 15 O -0.379 6.379 16 C -0.084 4.084 17 C -0.250 4.250 18 C 0.097 3.903 19 O -0.060 6.060 20 C -0.466 4.466 21 H 0.111 0.889 22 C -0.166 4.166 23 N -0.487 5.487 24 Si 0.766 3.234 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.195 1.195 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.226 0.774 44 H 0.126 0.874 45 H 0.150 0.850 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.554 12.117 -4.705 21.048 hybrid contribution 0.380 0.176 -0.753 0.861 sum -16.175 12.292 -5.458 21.036 Atomic orbital electron populations 1.22843 0.80605 1.02585 0.99987 1.86206 1.19159 1.26480 1.89977 1.17965 0.89277 0.84465 1.08159 1.20489 0.97476 0.90637 1.01345 1.18046 0.92739 0.91430 1.13615 1.22353 0.90552 0.94606 0.91783 1.22700 1.02732 1.02723 1.00636 1.18562 0.80917 0.85040 0.82563 1.91016 1.43212 1.36749 1.67049 1.47787 1.19177 1.30991 1.37989 1.21748 0.91575 0.90959 1.01879 1.21197 1.01394 0.88073 0.89519 1.21911 1.01419 0.94971 0.99230 1.22060 0.95891 0.86796 0.95181 1.86479 1.80780 1.30096 1.40554 1.20671 0.92170 0.97046 0.98498 1.20711 1.00319 0.90881 1.13079 1.18822 0.88244 0.87589 0.95662 1.83996 1.19426 1.25725 1.76842 1.21384 0.78703 0.94775 1.51712 0.88949 1.25330 1.00478 0.94223 0.96529 1.70050 1.36288 0.97642 1.44768 0.85778 0.80457 0.77943 0.79231 1.19429 1.20270 1.19451 0.94149 0.93599 0.89300 0.87330 0.85870 0.85899 0.92945 0.91550 0.90798 0.90931 0.89544 0.90543 0.91446 0.93846 0.93168 0.77377 0.87382 0.84986 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.81 101.05 0.99 1.64 16 2 O -0.30 -7.40 10.28 -34.23 -0.35 -7.76 16 3 C 0.05 1.12 6.70 -39.13 -0.26 0.86 16 4 C -0.08 -1.66 5.60 -38.99 -0.22 -1.87 16 5 C -0.16 -2.96 4.52 -105.04 -0.47 -3.44 16 6 C 0.03 0.38 9.80 -37.19 -0.36 0.01 16 7 C -0.27 -3.43 9.03 -37.50 -0.34 -3.77 16 8 C 0.54 8.12 6.66 -13.04 -0.09 8.03 16 9 O -0.50 -9.93 11.78 5.16 0.06 -9.87 16 10 N -0.62 -7.20 2.87 -183.28 -0.53 -7.73 16 11 C 0.08 0.60 10.11 59.84 0.60 1.21 16 12 C 0.12 1.31 5.41 -4.05 -0.02 1.29 16 13 C -0.14 -1.54 5.91 -26.74 -0.16 -1.70 16 14 C 0.08 0.78 7.05 37.16 0.26 1.05 16 15 O -0.57 -6.23 13.66 -35.23 -0.48 -6.71 16 16 C -0.07 -1.28 9.78 -39.13 -0.38 -1.67 16 17 C -0.23 -5.34 9.14 -39.49 -0.36 -5.70 16 18 C 0.15 4.04 6.67 -38.76 -0.26 3.78 16 19 O -0.16 -4.83 9.52 -13.97 -0.13 -4.96 16 20 C -0.39 -11.34 9.48 30.91 0.29 -11.05 16 21 H 0.09 2.46 5.18 -52.49 -0.27 2.19 16 22 C 0.04 1.12 5.49 -17.51 -0.10 1.03 16 23 N -0.85 -25.91 13.67 55.48 0.76 -25.16 16 24 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 28 H 0.04 0.65 7.65 -51.92 -0.40 0.25 16 29 H 0.05 0.81 6.27 -51.93 -0.33 0.49 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.11 2.07 5.29 -52.49 -0.28 1.79 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.12 1.13 6.33 -52.49 -0.33 0.80 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 36 H 0.07 0.49 6.18 -51.93 -0.32 0.17 16 37 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 38 H 0.09 1.13 7.42 -51.92 -0.39 0.74 16 39 H 0.08 1.10 6.74 -51.93 -0.35 0.75 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.38 2.35 9.12 45.56 0.42 2.76 16 44 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 45 H 0.13 2.98 5.62 -52.49 -0.29 2.69 16 46 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -37.55 380.88 -6.30 -43.85 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.47 Total: 6.91 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.87 Total: -10.30 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.23 Total: -32.89 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.91 Total: -29.30 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.55 -6.30 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493497853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.174 kcal (2) G-P(sol) polarization free energy of solvation -37.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds