Wall clock time and date at job start Tue Mar 31 2020 18:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35958 * 116.99830 * 2 1 4 4 C 1.38073 * 120.00067 * 0.23173 * 3 2 1 5 5 C 1.39978 * 119.83641 * 180.27672 * 4 3 2 6 6 C 1.46960 * 120.08076 * 179.76755 * 5 4 3 7 7 C 1.35027 * 120.00030 * 315.84663 * 6 5 4 8 8 C 1.46254 * 120.00175 * 348.78544 * 7 6 5 9 9 O 1.21731 * 119.99655 * 353.22888 * 8 7 6 10 10 N 1.34775 * 120.00270 * 172.94987 * 8 7 6 11 11 C 1.46496 * 119.99971 * 0.27606 * 10 8 7 12 12 C 1.46498 * 120.00094 * 180.28113 * 10 8 7 13 13 C 1.52995 * 109.47666 * 89.99733 * 12 10 8 14 14 C 1.52996 * 109.47506 * 180.02562 * 13 12 10 15 15 O 1.42902 * 109.47385 * 180.02562 * 14 13 12 16 16 C 1.40032 * 119.84265 * 359.49317 * 5 4 3 17 17 C 1.37646 * 119.99988 * 0.25136 * 16 5 4 18 18 C 1.39062 * 120.15907 * 0.02562 * 17 16 5 19 19 O 1.35614 * 119.91936 * 180.02562 * 18 17 16 20 20 C 1.34765 * 117.00055 * 354.29067 * 19 18 17 21 21 H 1.07999 * 120.00265 * 5.05701 * 20 19 18 22 22 C 1.38707 * 120.00001 * 185.06435 * 20 19 18 23 23 N 1.31526 * 120.00166 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99962 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46809 * 59.99881 * 24 22 20 26 26 H 1.48503 * 109.47075 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46853 * 299.99791 * 24 22 20 28 28 H 1.09012 * 109.47228 * 300.00144 * 1 2 3 29 29 H 1.08998 * 109.47564 * 60.00053 * 1 2 3 30 30 H 1.08997 * 109.47595 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.08633 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.00188 * 135.84688 * 6 5 4 33 33 H 1.07997 * 120.00018 * 168.78490 * 7 6 5 34 34 H 1.09002 * 109.47259 * 89.99879 * 11 10 8 35 35 H 1.09002 * 109.47506 * 210.00163 * 11 10 8 36 36 H 1.09000 * 109.47167 * 330.00170 * 11 10 8 37 37 H 1.09004 * 109.47035 * 210.00416 * 12 10 8 38 38 H 1.09011 * 109.46939 * 329.99523 * 12 10 8 39 39 H 1.09006 * 109.46939 * 300.00328 * 13 12 10 40 40 H 1.09005 * 109.46749 * 59.99725 * 13 12 10 41 41 H 1.09006 * 109.47149 * 300.00028 * 14 13 12 42 42 H 1.08998 * 109.47338 * 59.99635 * 14 13 12 43 43 H 0.96699 * 113.99488 * 179.97438 * 15 14 13 44 44 H 1.07998 * 120.00475 * 180.22840 * 16 5 4 45 45 H 1.07996 * 119.92266 * 180.02562 * 17 16 5 46 46 H 0.96994 * 119.99697 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 0.0048 5 6 1.9332 3.6148 -0.0010 6 6 1.1380 4.8507 -0.0011 7 6 0.0638 4.9623 -0.8116 8 6 -0.1687 3.9680 -1.8587 9 8 0.6671 3.1114 -2.0810 10 7 -1.3109 3.9967 -2.5736 11 6 -2.3168 5.0276 -2.3060 12 6 -1.5465 2.9970 -3.6182 13 6 -2.2567 1.7845 -3.0130 14 6 -2.5022 0.7402 -4.1039 15 8 -3.1660 -0.3920 -3.5388 16 6 3.3320 3.6803 -0.0011 17 6 4.0752 2.5218 -0.0005 18 6 3.4405 1.2845 -0.0005 19 8 4.1775 0.1461 0.0005 20 6 5.5130 0.2818 -0.1179 21 1 5.9572 1.2662 -0.1259 22 6 6.3172 -0.8428 -0.2298 23 7 5.7763 -2.0416 -0.2207 24 14 8.1684 -0.6546 -0.3947 25 1 8.7024 0.0512 0.7978 26 1 8.7952 -1.9969 -0.4980 27 1 8.4792 0.1315 -1.6156 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.2156 2.3145 0.0090 32 1 1.4128 5.6696 0.6471 33 1 -0.6236 5.7858 -0.6867 34 1 -2.1188 5.8992 -2.9299 35 1 -3.3082 4.6356 -2.5334 36 1 -2.2720 5.3150 -1.2555 37 1 -2.1694 3.4296 -4.4012 38 1 -0.5928 2.6845 -4.0438 39 1 -1.6337 1.3520 -2.2301 40 1 -3.2103 2.0971 -2.5875 41 1 -3.1249 1.1725 -4.8872 42 1 -1.5484 0.4278 -4.5291 43 1 -3.3543 -1.0955 -4.1750 44 1 3.8277 4.6398 -0.0019 45 1 5.1539 2.5737 -0.0001 46 1 6.3388 -2.8280 -0.2986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493497853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:19 Heat of formation + Delta-G solvation = -113.310698 kcal Electronic energy + Delta-G solvation = -29635.435823 eV Core-core repulsion = 25491.775818 eV Total energy + Delta-G solvation = -4143.660006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47271 -40.70355 -39.24711 -38.31700 -37.75996 -36.55490 -34.58268 -34.01948 -33.01899 -31.05472 -29.96756 -28.20899 -27.84282 -27.42390 -26.54240 -24.12776 -23.16398 -22.76448 -21.86773 -19.97260 -19.77544 -18.94204 -18.45589 -18.25978 -17.61127 -17.11943 -16.78294 -16.64623 -16.41400 -16.35794 -16.08197 -15.51779 -15.26590 -15.21825 -15.06536 -14.80882 -14.30814 -14.11052 -13.93880 -13.83378 -13.66836 -13.48456 -13.30114 -13.15801 -13.05063 -12.77308 -12.64127 -12.51623 -12.20944 -12.14219 -12.06937 -12.02618 -11.79031 -11.34219 -10.93842 -10.90238 -10.63296 -10.37263 -9.61421 -9.08824 -8.48937 -8.43813 -6.09926 -0.07211 0.69281 1.06884 1.33520 1.47288 1.51422 2.13044 2.18664 2.43515 2.57718 2.86518 3.16262 3.36093 3.46319 3.73830 3.90897 3.96513 4.08997 4.14474 4.20975 4.25220 4.31155 4.32593 4.39091 4.41977 4.52411 4.53885 4.57993 4.62629 4.63978 4.74372 4.80890 4.98883 5.03073 5.04863 5.11641 5.16624 5.21380 5.28818 5.52855 5.60214 5.68446 5.78660 5.97886 6.09269 6.51068 6.63636 6.84083 6.98129 7.37030 7.83069 8.78766 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.003452 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.649147 B = 8110.009211 C = 9486.715762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.346 6.346 3 C 0.023 3.977 4 C -0.073 4.073 5 C -0.126 4.126 6 C 0.003 3.997 7 C -0.230 4.230 8 C 0.520 3.480 9 O -0.565 6.565 10 N -0.617 5.617 11 C 0.071 3.929 12 C 0.121 3.879 13 C -0.130 4.130 14 C 0.078 3.922 15 O -0.596 6.596 16 C -0.076 4.076 17 C -0.229 4.229 18 C 0.096 3.904 19 O -0.222 6.222 20 C -0.417 4.417 21 H 0.104 0.896 22 C -0.026 4.026 23 N -0.921 5.921 24 Si 1.023 2.977 25 H -0.253 1.253 26 H -0.271 1.271 27 H -0.258 1.258 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.174 0.826 33 H 0.176 0.824 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.055 0.945 39 H 0.035 0.965 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.036 0.964 43 H 0.398 0.602 44 H 0.153 0.847 45 H 0.129 0.871 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.946 18.014 -5.582 27.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.261 6.261 3 C -0.021 4.021 4 C -0.092 4.092 5 C -0.126 4.126 6 C -0.016 4.016 7 C -0.251 4.251 8 C 0.312 3.688 9 O -0.445 6.445 10 N -0.350 5.350 11 C -0.070 4.070 12 C -0.002 4.002 13 C -0.169 4.169 14 C 0.000 4.000 15 O -0.405 6.405 16 C -0.094 4.094 17 C -0.248 4.248 18 C 0.045 3.955 19 O -0.129 6.129 20 C -0.493 4.493 21 H 0.121 0.879 22 C -0.223 4.223 23 N -0.559 5.559 24 Si 0.841 3.159 25 H -0.177 1.177 26 H -0.195 1.195 27 H -0.182 1.182 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.125 0.875 31 H 0.142 0.858 32 H 0.191 0.809 33 H 0.193 0.807 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.248 0.752 44 H 0.170 0.830 45 H 0.147 0.853 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.426 17.296 -5.179 26.521 hybrid contribution 0.644 -1.012 -0.737 1.408 sum -18.783 16.284 -5.915 25.553 Atomic orbital electron populations 1.23063 0.77864 1.04209 1.00842 1.86138 1.22196 1.27489 1.90309 1.18374 0.89194 0.85636 1.08918 1.20725 0.97984 0.90323 1.00167 1.18715 0.93140 0.93024 1.07766 1.22626 0.90566 0.93839 0.94576 1.23197 1.01634 1.02359 0.97876 1.19215 0.81333 0.84946 0.83332 1.91024 1.45514 1.39153 1.68798 1.47916 1.18895 1.31382 1.36789 1.22109 0.91215 0.90375 1.03316 1.21253 1.00482 0.88242 0.90215 1.21834 1.01056 0.95394 0.98618 1.22092 0.96000 0.86520 0.95350 1.86423 1.80779 1.31104 1.42197 1.21118 0.92726 0.97469 0.98136 1.20928 1.00595 0.91181 1.12117 1.19477 0.89403 0.88125 0.98480 1.83965 1.20065 1.27830 1.80995 1.21912 0.79115 0.95737 1.52520 0.87894 1.26714 1.06314 0.93443 0.95814 1.70224 1.38497 0.98738 1.48392 0.84606 0.72895 0.78365 0.79996 1.17669 1.19527 1.18199 0.92047 0.93637 0.87475 0.85806 0.80924 0.80674 0.90931 0.89527 0.89337 0.87010 0.92686 0.94603 0.90092 0.90473 0.94543 0.75230 0.82975 0.85337 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.32 9.81 113.37 1.11 2.43 16 2 O -0.35 -18.21 10.28 -79.10 -0.81 -19.02 16 3 C 0.02 1.21 6.70 22.56 0.15 1.36 16 4 C -0.07 -3.03 5.60 22.65 0.13 -2.90 16 5 C -0.13 -4.48 4.52 -20.14 -0.09 -4.57 16 6 C 0.00 0.07 9.80 23.82 0.23 0.30 16 7 C -0.23 -4.60 9.03 23.62 0.21 -4.39 16 8 C 0.52 14.12 6.66 86.33 0.57 14.70 16 9 O -0.56 -22.02 11.78 -4.45 -0.05 -22.07 16 10 N -0.62 -11.96 2.87 -851.99 -2.45 -14.41 16 11 C 0.07 0.63 10.11 127.77 1.29 1.92 16 12 C 0.12 2.36 5.41 86.38 0.47 2.83 16 13 C -0.13 -2.77 5.91 30.59 0.18 -2.59 16 14 C 0.08 1.47 7.05 71.98 0.51 1.98 16 15 O -0.60 -12.50 13.66 -148.98 -2.04 -14.54 16 16 C -0.08 -2.91 9.78 22.56 0.22 -2.69 16 17 C -0.23 -11.06 9.14 22.33 0.20 -10.86 16 18 C 0.10 5.50 6.67 22.80 0.15 5.66 16 19 O -0.22 -14.95 9.52 -6.61 -0.06 -15.01 16 20 C -0.42 -26.28 9.48 67.93 0.64 -25.63 16 21 H 0.10 5.88 5.18 -2.91 -0.02 5.87 16 22 C -0.03 -1.56 5.49 84.85 0.47 -1.09 16 23 N -0.92 -60.57 13.67 21.62 0.30 -60.27 16 24 Si 1.02 45.37 29.55 68.60 2.03 47.39 16 25 H -0.25 -10.35 7.11 99.48 0.71 -9.65 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 28 H 0.06 2.01 7.65 -2.38 -0.02 1.99 16 29 H 0.05 1.70 6.27 -2.39 -0.01 1.68 16 30 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 31 H 0.12 4.65 5.29 -2.91 -0.02 4.64 16 32 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.18 1.75 6.33 -2.91 -0.02 1.74 16 34 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.09 0.49 8.07 -2.39 -0.02 0.47 16 36 H 0.09 0.56 6.18 -2.39 -0.01 0.54 16 37 H 0.11 1.31 8.07 -2.38 -0.02 1.29 16 38 H 0.05 1.44 7.42 -2.38 -0.02 1.43 16 39 H 0.04 1.05 6.74 -2.38 -0.02 1.03 16 40 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.40 4.60 9.12 -74.06 -0.68 3.92 16 44 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 45 H 0.13 6.12 5.62 -2.91 -0.02 6.10 16 46 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -95.52 380.88 3.71 -91.81 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.35 Total: 29.66 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 6.45 Total: -23.54 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -2.15 Total: -74.68 kcal Atomic # 8 Polarization: -67.67 SS G_CDS: -2.96 Total: -70.64 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -95.52 3.71 -91.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493497853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.500 kcal (2) G-P(sol) polarization free energy of solvation -95.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds