Wall clock time and date at job start Tue Mar 31 2020 19:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00253 * 2 1 4 4 C 1.53000 * 109.47746 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46915 * 64.99608 * 4 3 2 6 6 C 1.36713 * 120.00089 * 270.00481 * 5 4 3 7 7 H 1.08003 * 119.99515 * 137.49890 * 6 5 4 8 8 C 1.39125 * 120.00098 * 317.49814 * 6 5 4 9 9 N 1.31323 * 119.99968 * 351.68693 * 8 6 5 10 10 Si 1.86795 * 119.99809 * 171.68410 * 8 6 5 11 11 H 1.48497 * 109.47357 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46972 * 120.00141 * 10 8 6 13 13 H 1.48503 * 109.47013 * 239.99957 * 10 8 6 14 14 C 1.34778 * 119.99710 * 90.00269 * 5 4 3 15 15 O 1.21758 * 119.99908 * 354.53447 * 14 5 4 16 16 C 1.46225 * 119.99945 * 174.80557 * 14 5 4 17 17 C 1.34977 * 120.00012 * 173.79113 * 16 14 5 18 18 C 1.47162 * 119.99879 * 348.71183 * 17 16 14 19 19 C 1.39818 * 120.12336 * 313.19674 * 18 17 16 20 20 C 1.38425 * 119.87461 * 179.74021 * 19 18 17 21 21 O 1.35909 * 119.93626 * 180.25276 * 20 19 18 22 22 C 1.42899 * 116.99841 * 180.27585 * 21 20 19 23 23 C 1.38791 * 120.12303 * 0.53515 * 20 19 18 24 24 C 1.38790 * 120.24458 * 359.71868 * 23 20 19 25 25 O 1.35906 * 119.93983 * 180.02562 * 24 23 20 26 26 C 1.42901 * 116.99939 * 0.02562 * 25 24 23 27 27 C 1.38427 * 120.11981 * 0.02562 * 24 23 20 28 28 H 1.08994 * 109.47270 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47178 * 300.00074 * 1 2 3 30 30 H 1.08999 * 109.47176 * 59.99703 * 1 2 3 31 31 H 1.09007 * 109.46954 * 59.99292 * 3 2 1 32 32 H 1.08998 * 109.47111 * 300.00202 * 3 2 1 33 33 H 1.09003 * 109.46423 * 305.00121 * 4 3 2 34 34 H 1.08999 * 109.47214 * 185.00119 * 4 3 2 35 35 H 0.96998 * 120.00130 * 185.00500 * 9 8 6 36 36 H 1.07999 * 120.00275 * 353.79150 * 16 14 5 37 37 H 1.08001 * 119.99612 * 168.71949 * 17 16 14 38 38 H 1.07996 * 120.05733 * 359.97438 * 19 18 17 39 39 H 1.09012 * 109.46754 * 60.00598 * 22 21 20 40 40 H 1.09000 * 109.47132 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47859 * 300.00750 * 22 21 20 42 42 H 1.07998 * 119.87500 * 179.74232 * 23 20 19 43 43 H 1.09001 * 109.46972 * 60.00020 * 26 25 24 44 44 H 1.08995 * 109.47428 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.47243 * 300.00680 * 26 25 24 46 46 H 1.08003 * 120.05749 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0976 -0.7952 -1.3343 7 1 3.7491 -1.3153 -2.2143 8 6 4.6696 -1.5084 -0.2855 9 7 5.2400 -0.8687 0.7094 10 14 4.6262 -3.3758 -0.2928 11 1 3.9318 -3.8501 -1.5167 12 1 6.0142 -3.9033 -0.2759 13 1 3.8986 -3.8587 0.9083 14 6 4.2634 1.3329 -2.3200 15 8 4.0612 2.5329 -2.2786 16 6 4.8116 0.7252 -3.5318 17 6 4.9813 1.4714 -4.6436 18 6 4.3929 2.8180 -4.7229 19 6 3.0641 3.0267 -4.3413 20 6 2.5175 4.2964 -4.4129 21 8 1.2275 4.5016 -4.0374 22 6 0.7257 5.8355 -4.1425 23 6 3.2825 5.3592 -4.8730 24 6 4.6004 5.1567 -5.2581 25 8 5.3440 6.2019 -5.7072 26 6 4.7051 7.4792 -5.7556 27 6 5.1589 3.8922 -5.1856 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1766 0.0902 35 1 5.7020 -1.3644 1.4034 36 1 5.0807 -0.3207 -3.5371 37 1 5.5489 1.0802 -5.4750 38 1 2.4666 2.1995 -3.9878 39 1 0.7847 6.1652 -5.1799 40 1 -0.3126 5.8602 -3.8116 41 1 1.3221 6.4986 -3.5160 42 1 2.8507 6.3473 -4.9311 43 1 4.3791 7.7606 -4.7543 44 1 5.4076 8.2229 -6.1317 45 1 3.8410 7.4284 -6.4181 46 1 6.1844 3.7357 -5.4860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493527990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:58 Heat of formation + Delta-G solvation = -85.971831 kcal Electronic energy + Delta-G solvation = -29930.732504 eV Core-core repulsion = 25788.258001 eV Total energy + Delta-G solvation = -4142.474504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.16247 -38.74875 -38.51088 -37.08944 -36.30437 -34.60656 -32.56333 -31.54165 -29.96150 -29.61923 -28.54769 -27.67901 -26.38899 -25.78759 -24.74763 -23.41105 -21.98284 -21.62125 -20.12561 -18.94834 -18.09569 -16.71554 -16.34538 -16.09656 -15.74561 -15.68083 -15.59449 -15.37603 -15.30143 -15.20273 -14.53617 -14.45641 -14.32292 -13.97325 -13.43960 -13.13832 -13.02622 -12.71999 -12.33599 -12.23078 -11.95377 -11.89398 -11.60877 -11.47814 -11.33250 -11.17270 -11.04298 -10.93609 -10.89239 -10.77799 -10.68529 -10.32865 -10.25038 -10.01376 -9.10829 -8.96452 -8.90478 -8.46111 -7.73859 -7.41305 -7.21097 -6.29635 -4.03693 1.37829 2.02021 2.47651 3.18075 3.26020 3.28957 3.43816 3.56982 4.12364 4.29156 4.49876 4.60946 4.88371 5.00135 5.08703 5.11763 5.12828 5.15228 5.20057 5.39402 5.42058 5.49794 5.61278 5.64052 5.72084 5.78859 5.81351 5.95124 6.04551 6.09593 6.18300 6.26703 6.42041 6.45294 6.61676 6.69316 6.73921 6.89391 6.95131 7.13235 7.28580 7.33339 7.47753 7.56545 7.85977 7.89714 8.08647 8.43098 9.13508 9.56409 9.99884 10.70198 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.003726 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.963088 B = 7513.553883 C = 8737.384047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.055 3.945 4 C 0.107 3.893 5 N -0.415 5.415 6 C -0.313 4.313 7 H 0.087 0.913 8 C 0.049 3.951 9 N -0.867 5.867 10 Si 0.921 3.079 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.280 1.280 14 C 0.477 3.523 15 O -0.591 6.591 16 C -0.126 4.126 17 C -0.110 4.110 18 C 0.046 3.954 19 C -0.098 4.098 20 C 0.148 3.852 21 O -0.316 6.316 22 C 0.031 3.969 23 C -0.296 4.296 24 C 0.144 3.856 25 O -0.320 6.320 26 C 0.031 3.969 27 C -0.176 4.176 28 H 0.076 0.924 29 H 0.028 0.972 30 H 0.031 0.969 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.123 0.877 34 H 0.068 0.932 35 H 0.270 0.730 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.123 0.877 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.050 0.950 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.513 9.423 -8.590 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.022 4.022 4 C -0.016 4.016 5 N -0.130 5.130 6 C -0.442 4.442 7 H 0.104 0.896 8 C -0.157 4.157 9 N -0.504 5.504 10 Si 0.748 3.252 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.206 1.206 14 C 0.269 3.731 15 O -0.479 6.479 16 C -0.147 4.147 17 C -0.131 4.131 18 C 0.045 3.955 19 C -0.117 4.117 20 C 0.103 3.897 21 O -0.229 6.229 22 C -0.064 4.064 23 C -0.316 4.316 24 C 0.100 3.900 25 O -0.234 6.234 26 C -0.065 4.065 27 C -0.195 4.195 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.140 0.860 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.141 0.859 43 H 0.070 0.930 44 H 0.113 0.887 45 H 0.068 0.932 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.421 9.633 -8.262 13.800 hybrid contribution -0.419 -0.278 0.323 0.597 sum -5.840 9.355 -7.940 13.589 Atomic orbital electron populations 1.22630 0.83632 1.01596 0.98767 1.88143 1.17167 1.27769 1.95011 1.22992 0.96586 0.84196 0.98454 1.21631 0.89194 0.99056 0.91744 1.43277 1.54186 1.06135 1.09423 1.19382 1.38947 0.81079 1.04753 0.89567 1.25470 0.94533 1.00194 0.95508 1.69619 1.32491 1.36240 1.12031 0.85960 0.77761 0.82834 0.78656 1.19190 1.20853 1.20579 1.18517 0.82364 0.86376 0.85874 1.90753 1.58557 1.14705 1.83887 1.23380 0.98674 0.99841 0.92820 1.22004 1.00205 0.92555 0.98336 1.18308 0.91663 0.92711 0.92790 1.20197 0.94861 0.94633 1.01991 1.18450 0.82898 0.93597 0.94781 1.86090 1.25221 1.29768 1.81865 1.22933 0.99667 0.82988 1.00834 1.21042 0.95733 0.99197 1.15625 1.18418 0.89280 0.87412 0.94934 1.86042 1.40049 1.16113 1.81148 1.22941 0.98811 0.83436 1.01278 1.20268 1.00554 0.89581 1.09058 0.90529 0.95313 0.95019 0.94631 0.94128 0.86002 0.91386 0.91950 0.84765 0.85409 0.86054 0.93278 0.88742 0.93102 0.85893 0.93026 0.88690 0.93160 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.93 10.17 -35.23 -0.36 -8.29 16 3 C 0.06 1.19 6.28 37.16 0.23 1.43 16 4 C 0.11 2.60 5.37 -4.04 -0.02 2.58 16 5 N -0.41 -10.39 2.48 -116.46 -0.29 -10.68 16 6 C -0.31 -7.88 7.65 -15.05 -0.12 -7.99 16 7 H 0.09 2.11 7.27 -52.48 -0.38 1.72 16 8 C 0.05 1.22 5.22 -17.44 -0.09 1.13 16 9 N -0.87 -22.73 11.04 55.51 0.61 -22.12 16 10 Si 0.92 19.69 29.57 -169.99 -5.03 14.67 16 11 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 C 0.48 11.55 6.73 -13.05 -0.09 11.46 16 15 O -0.59 -15.05 11.97 5.14 0.06 -14.99 16 16 C -0.13 -2.60 9.13 -37.53 -0.34 -2.94 16 17 C -0.11 -1.98 9.79 -37.12 -0.36 -2.34 16 18 C 0.05 0.87 4.40 -105.10 -0.46 0.41 16 19 C -0.10 -1.96 6.64 -38.92 -0.26 -2.22 16 20 C 0.15 2.72 6.68 -39.31 -0.26 2.46 16 21 O -0.32 -5.38 10.49 -19.46 -0.20 -5.59 16 22 C 0.03 0.36 9.81 101.05 0.99 1.35 16 23 C -0.30 -4.85 8.03 -39.17 -0.31 -5.16 16 24 C 0.14 2.45 6.68 -39.31 -0.26 2.19 16 25 O -0.32 -4.80 10.49 -19.44 -0.20 -5.00 16 26 C 0.03 0.32 9.81 101.05 0.99 1.31 16 27 C -0.18 -3.14 9.73 -38.92 -0.38 -3.52 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.12 3.18 5.37 -51.93 -0.28 2.90 16 34 H 0.07 1.67 7.50 -51.93 -0.39 1.28 16 35 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.13 2.61 6.87 -52.49 -0.36 2.25 16 37 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 38 H 0.12 2.60 7.33 -52.49 -0.38 2.22 16 39 H 0.05 0.48 7.66 -51.92 -0.40 0.08 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 42 H 0.12 1.63 4.48 -52.49 -0.24 1.40 16 43 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.45 7.65 -51.93 -0.40 0.06 16 46 H 0.13 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 381.33 15.07 5.75 5.75 Total: -1.00 -31.28 381.33 -5.85 -37.13 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.56 Total: 7.35 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 0.37 Total: 1.77 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.32 Total: -32.80 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.71 Total: -33.87 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.28 -5.85 -37.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493527990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.838 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds