Wall clock time and date at job start Tue Mar 31 2020 18:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35951 * 116.99865 * 2 1 4 4 C 1.38080 * 120.00072 * 359.97438 * 3 2 1 5 5 C 1.39978 * 119.83951 * 179.97438 * 4 3 2 6 6 C 1.46965 * 120.08100 * 179.97438 * 5 4 3 7 7 C 1.35024 * 119.99934 * 136.89648 * 6 5 4 8 8 C 1.46249 * 119.99930 * 346.77997 * 7 6 5 9 9 O 1.21725 * 120.00473 * 353.63854 * 8 7 6 10 10 N 1.34779 * 120.00046 * 173.63294 * 8 7 6 11 11 C 1.46494 * 120.00212 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47460 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.47432 * 179.97438 * 12 11 10 14 14 C 1.53008 * 109.47099 * 180.02562 * 13 12 11 15 15 O 1.42902 * 109.46728 * 180.02562 * 14 13 12 16 16 C 1.40034 * 119.83922 * 0.25979 * 5 4 3 17 17 C 1.37646 * 120.00450 * 359.48457 * 16 5 4 18 18 C 1.39063 * 120.15748 * 0.51330 * 17 16 5 19 19 O 1.35607 * 119.92127 * 179.76264 * 18 17 16 20 20 C 1.34762 * 116.99943 * 355.61565 * 19 18 17 21 21 H 1.07995 * 120.00113 * 5.01061 * 20 19 18 22 22 C 1.38709 * 120.00045 * 185.00838 * 20 19 18 23 23 N 1.31522 * 119.99967 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00005 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47188 * 90.00113 * 24 22 20 26 26 H 1.48495 * 109.47152 * 209.99934 * 24 22 20 27 27 H 1.48503 * 109.47239 * 329.99948 * 24 22 20 28 28 H 1.08996 * 109.46737 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46751 * 299.99893 * 1 2 3 30 30 H 1.09001 * 109.47107 * 59.99927 * 1 2 3 31 31 H 1.08000 * 120.08347 * 359.96074 * 4 3 2 32 32 H 1.08000 * 119.99870 * 316.89046 * 6 5 4 33 33 H 1.07999 * 119.99834 * 167.06672 * 7 6 5 34 34 H 0.97000 * 119.99796 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47568 * 300.00207 * 11 10 8 36 36 H 1.09004 * 109.47473 * 60.00431 * 11 10 8 37 37 H 1.09000 * 109.47068 * 300.00720 * 12 11 10 38 38 H 1.09002 * 109.46715 * 59.99650 * 12 11 10 39 39 H 1.08998 * 109.47341 * 300.00153 * 13 12 11 40 40 H 1.09002 * 109.47296 * 60.00201 * 13 12 11 41 41 H 1.08998 * 109.47015 * 300.00189 * 14 13 12 42 42 H 1.08996 * 109.46596 * 60.00422 * 14 13 12 43 43 H 0.96701 * 113.99765 * 179.97438 * 15 14 13 44 44 H 1.08001 * 119.99696 * 179.74334 * 16 5 4 45 45 H 1.07994 * 119.92550 * 180.23283 * 17 16 5 46 46 H 0.97001 * 119.99993 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2941 2.3694 -0.0005 5 6 1.9331 3.6148 0.0000 6 6 1.1379 4.8507 -0.0011 7 6 1.4896 5.8806 0.7982 8 6 2.4692 5.6769 1.8648 9 8 2.8808 4.5573 2.1076 10 7 2.9164 6.7288 2.5790 11 6 3.8981 6.5248 3.6470 12 6 4.2349 7.8699 4.2939 13 6 5.2597 7.6568 5.4098 14 6 5.5960 9.0019 6.0570 15 8 6.5536 8.8028 7.0989 16 6 3.3319 3.6803 -0.0044 17 6 4.0752 2.5218 0.0014 18 6 3.4405 1.2845 0.0010 19 8 4.1775 0.1462 0.0019 20 6 5.5151 0.2833 -0.0886 21 1 5.9591 1.2677 -0.0759 22 6 6.3216 -0.8399 -0.1979 23 7 7.6271 -0.7061 -0.2856 24 14 5.5537 -2.5426 -0.2204 25 1 5.2499 -2.9301 -1.6213 26 1 6.5022 -3.5212 0.3693 27 1 4.2984 -2.5300 0.5731 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 0.2155 2.3144 -0.0016 32 1 0.2722 4.9352 -0.6413 33 1 1.0441 6.8536 0.6527 34 1 2.5882 7.6209 2.3857 35 1 3.4830 5.8536 4.3988 36 1 4.8042 6.0862 3.2289 37 1 4.6502 8.5409 3.5419 38 1 3.3291 8.3090 4.7119 39 1 4.8440 6.9861 6.1617 40 1 6.1657 7.2176 4.9921 41 1 6.0116 9.6730 5.3053 42 1 4.6899 9.4406 6.4748 43 1 6.8142 9.6153 7.5540 44 1 3.8275 4.6398 -0.0082 45 1 5.1539 2.5738 0.0018 46 1 8.1911 -1.4916 -0.3617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493676185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:42 Heat of formation + Delta-G solvation = -130.510808 kcal Electronic energy + Delta-G solvation = -28170.964579 eV Core-core repulsion = 24026.558721 eV Total energy + Delta-G solvation = -4144.405858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43652 -40.62842 -39.35605 -38.33125 -37.84523 -36.47881 -34.60673 -34.12448 -33.80411 -31.16816 -30.39207 -29.01254 -27.82696 -27.17994 -25.09353 -23.63746 -23.18030 -22.41047 -22.19001 -20.44250 -19.85800 -19.47083 -18.33876 -18.02776 -17.66040 -17.08768 -16.98361 -16.72665 -16.66211 -16.33873 -15.94866 -15.56645 -15.42111 -15.36148 -15.01883 -14.81052 -14.68805 -14.50559 -14.27120 -13.96843 -13.73857 -13.26093 -13.10724 -12.95331 -12.84992 -12.81397 -12.74936 -12.58727 -12.08674 -12.06363 -11.89835 -11.86610 -11.82116 -11.45960 -10.98416 -10.87696 -10.70038 -10.32662 -10.02611 -9.39012 -8.52462 -8.44199 -6.19698 -0.09274 0.60194 1.05259 1.26635 1.33092 1.51439 2.28014 2.33477 2.47002 2.55295 2.77299 3.04592 3.11447 3.36643 3.85328 3.91094 3.91692 4.03865 4.14529 4.20398 4.30098 4.34583 4.35872 4.44191 4.46448 4.56461 4.57922 4.62137 4.71052 4.73778 4.77108 4.80378 4.92532 4.96335 5.09859 5.22633 5.24372 5.28812 5.44078 5.52996 5.54314 5.59366 5.79555 5.85135 6.06758 6.63938 6.73532 6.82062 6.91188 7.46523 7.60420 8.59530 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009607 B = 0.002843 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.816780 B = 9846.993355 C =12072.589621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.345 6.345 3 C 0.039 3.961 4 C -0.136 4.136 5 C -0.109 4.109 6 C -0.003 4.003 7 C -0.219 4.219 8 C 0.519 3.481 9 O -0.571 6.571 10 N -0.715 5.715 11 C 0.119 3.881 12 C -0.108 4.108 13 C -0.125 4.125 14 C 0.077 3.923 15 O -0.604 6.604 16 C -0.028 4.028 17 C -0.216 4.216 18 C 0.100 3.900 19 O -0.236 6.236 20 C -0.398 4.398 21 H 0.078 0.922 22 C 0.012 3.988 23 N -0.921 5.921 24 Si 0.969 3.031 25 H -0.263 1.263 26 H -0.262 1.262 27 H -0.270 1.270 28 H 0.111 0.889 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.166 0.834 32 H 0.177 0.823 33 H 0.180 0.820 34 H 0.418 0.582 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.398 0.602 44 H 0.113 0.887 45 H 0.107 0.893 46 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.808 23.735 6.116 29.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.261 6.261 3 C -0.006 4.006 4 C -0.154 4.154 5 C -0.110 4.110 6 C -0.022 4.022 7 C -0.240 4.240 8 C 0.310 3.690 9 O -0.452 6.452 10 N -0.368 5.368 11 C -0.005 4.005 12 C -0.146 4.146 13 C -0.163 4.163 14 C 0.000 4.000 15 O -0.413 6.413 16 C -0.047 4.047 17 C -0.235 4.235 18 C 0.050 3.950 19 O -0.143 6.143 20 C -0.475 4.475 21 H 0.096 0.904 22 C -0.186 4.186 23 N -0.562 5.562 24 Si 0.792 3.208 25 H -0.188 1.188 26 H -0.187 1.187 27 H -0.195 1.195 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.184 0.816 32 H 0.194 0.806 33 H 0.198 0.802 34 H 0.255 0.745 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.248 0.752 44 H 0.131 0.869 45 H 0.125 0.875 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.340 21.831 6.121 27.948 hybrid contribution 0.676 0.145 0.319 0.761 sum -15.665 21.976 6.440 27.746 Atomic orbital electron populations 1.23297 0.76860 1.05075 1.02212 1.86116 1.23188 1.26613 1.90154 1.18185 0.88316 0.86164 1.07888 1.21210 1.00169 0.89598 1.04459 1.18745 0.92326 0.93796 1.06156 1.22604 0.95668 0.89040 0.94910 1.23141 1.01864 1.01727 0.97245 1.19242 0.81896 0.84290 0.83615 1.91027 1.59227 1.25270 1.69664 1.45792 1.44405 1.10743 1.35865 1.21218 0.91436 0.98529 0.89346 1.21539 1.00066 0.95341 0.97646 1.21448 0.99188 0.97912 0.97769 1.22220 0.91892 0.96415 0.89522 1.86453 1.63401 1.39100 1.52299 1.20695 0.93355 0.95703 0.94901 1.20831 0.99861 0.92023 1.10807 1.19134 0.89396 0.86733 0.99697 1.83522 1.18921 1.28757 1.83128 1.20751 0.78549 0.96303 1.51854 0.90429 1.25237 0.94957 1.02941 0.95480 1.69712 1.03929 1.32797 1.49787 0.85241 0.78474 0.77608 0.79518 1.18772 1.18655 1.19488 0.87060 0.91954 0.91038 0.81647 0.80628 0.80231 0.74463 0.93414 0.94145 0.89295 0.88789 0.92208 0.92731 0.92117 0.91727 0.75175 0.86911 0.87529 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.64 16 2 O -0.35 -14.76 10.28 -79.02 -0.81 -15.58 16 3 C 0.04 1.77 6.70 22.57 0.15 1.92 16 4 C -0.14 -4.71 8.77 22.65 0.20 -4.52 16 5 C -0.11 -3.67 4.49 -20.13 -0.09 -3.76 16 6 C 0.00 -0.06 9.79 23.82 0.23 0.17 16 7 C -0.22 -3.93 9.87 23.61 0.23 -3.69 16 8 C 0.52 13.58 6.78 86.32 0.59 14.16 16 9 O -0.57 -22.24 12.36 -4.43 -0.05 -22.30 16 10 N -0.71 -13.04 5.55 -467.50 -2.60 -15.64 16 11 C 0.12 2.48 5.67 86.38 0.49 2.97 16 12 C -0.11 -1.29 5.33 30.59 0.16 -1.13 16 13 C -0.12 -1.99 5.58 30.59 0.17 -1.82 16 14 C 0.08 0.91 7.05 71.98 0.51 1.42 16 15 O -0.60 -9.57 13.66 -148.98 -2.04 -11.60 16 16 C -0.03 -1.15 6.68 22.57 0.15 -1.00 16 17 C -0.22 -11.03 9.14 22.33 0.20 -10.82 16 18 C 0.10 5.42 6.67 22.80 0.15 5.57 16 19 O -0.24 -14.55 8.35 -6.49 -0.05 -14.61 16 20 C -0.40 -25.80 9.94 67.93 0.68 -25.12 16 21 H 0.08 5.26 5.41 -2.91 -0.02 5.24 16 22 C 0.01 0.76 5.49 84.85 0.47 1.23 16 23 N -0.92 -58.37 13.96 21.62 0.30 -58.07 16 24 Si 0.97 49.78 28.62 68.60 1.96 51.75 16 25 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.27 -14.36 7.11 99.48 0.71 -13.65 16 28 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.06 1.44 7.66 -2.38 -0.02 1.42 16 30 H 0.07 1.53 7.66 -2.39 -0.02 1.51 16 31 H 0.17 4.12 6.28 -2.91 -0.02 4.10 16 32 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.42 3.83 8.45 -92.71 -0.78 3.05 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.40 2.32 9.12 -74.06 -0.68 1.65 16 44 H 0.11 4.26 7.10 -2.91 -0.02 4.24 16 45 H 0.11 5.95 5.60 -2.91 -0.02 5.93 16 46 H 0.29 16.49 8.31 -92.71 -0.77 15.72 16 Total: -1.00 -92.51 386.87 1.68 -90.83 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.44 Total: 17.99 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 5.40 Total: -22.78 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -2.29 Total: -73.70 kcal Atomic # 8 Polarization: -61.13 SS G_CDS: -2.96 Total: -64.08 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 1.96 Total: 51.75 kcal Total: -92.51 1.68 -90.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493676185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.683 kcal (2) G-P(sol) polarization free energy of solvation -92.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds