Wall clock time and date at job start Tue Mar 31 2020 18:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 119.99800 * 2 1 4 4 C 1.53004 * 109.47058 * 269.99670 * 3 2 1 5 5 C 1.50705 * 109.47112 * 180.02562 * 4 3 2 6 6 O 1.20829 * 119.99959 * 359.97438 * 5 4 3 7 7 O 1.34226 * 119.99869 * 180.02562 * 5 4 3 8 8 C 1.45203 * 117.00072 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47337 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.46860 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00216 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99499 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99957 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99721 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46906 * 89.99751 * 14 12 10 16 16 H 1.48502 * 109.47074 * 209.99653 * 14 12 10 17 17 H 1.48494 * 109.47173 * 329.99889 * 14 12 10 18 18 C 1.34772 * 119.99637 * 179.97438 * 2 1 3 19 19 O 1.21516 * 119.99634 * 180.02562 * 18 2 1 20 20 O 1.34639 * 120.00599 * 0.02562 * 18 2 1 21 21 C 1.45190 * 117.00170 * 179.97438 * 20 18 2 22 22 C 1.50707 * 109.47131 * 179.97438 * 21 20 18 23 23 C 1.38238 * 119.99792 * 90.00017 * 22 21 20 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.97954 * 22 21 20 28 28 H 1.08992 * 109.47258 * 270.00334 * 1 2 3 29 29 H 1.09002 * 109.46684 * 30.00316 * 1 2 3 30 30 H 1.09003 * 109.47359 * 149.99967 * 1 2 3 31 31 H 1.08998 * 109.47816 * 30.00105 * 3 2 1 32 32 H 1.09002 * 109.46937 * 149.99636 * 3 2 1 33 33 H 1.08999 * 109.46776 * 299.99964 * 4 3 2 34 34 H 1.08990 * 109.46955 * 60.00010 * 4 3 2 35 35 H 1.09003 * 109.46967 * 299.99900 * 8 7 5 36 36 H 1.09000 * 109.46668 * 59.99613 * 8 7 5 37 37 H 1.08998 * 109.46683 * 299.99741 * 9 8 7 38 38 H 1.08991 * 109.46864 * 59.99670 * 9 8 7 39 39 H 0.97002 * 119.99661 * 179.97438 * 13 12 10 40 40 H 1.09005 * 109.47695 * 59.99979 * 21 20 18 41 41 H 1.09000 * 109.47342 * 299.99215 * 21 20 18 42 42 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 43 43 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 46 46 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2065 3.0152 -1.4426 6 8 3.5085 3.5385 -0.3961 7 8 3.5418 3.5965 -2.6050 8 6 4.2668 4.8523 -2.5291 9 6 4.5594 5.3586 -3.9429 10 6 5.3124 6.6616 -3.8640 11 1 5.5574 7.0863 -2.9017 12 6 5.6876 7.3120 -5.0204 13 7 5.3888 6.7951 -6.1921 14 14 6.6204 8.9275 -4.9226 15 1 8.0801 8.6554 -4.8970 16 1 6.2929 9.7607 -6.1075 17 1 6.2299 9.6505 -3.6858 18 6 2.1388 -1.1672 0.0005 19 8 3.3540 -1.1672 0.0010 20 8 1.4657 -2.3332 0.0005 21 6 2.2565 -3.5509 0.0005 22 6 1.3384 -4.7461 0.0012 23 6 0.9170 -5.2945 -1.1958 24 6 0.0753 -6.3911 -1.1951 25 6 -0.3444 -6.9397 0.0023 26 6 0.0728 -6.3880 1.1991 27 6 0.9182 -5.2942 1.1986 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 3.0417 0.9507 -1.9563 34 1 1.5002 1.8406 -1.9563 35 1 3.6642 5.5882 -1.9967 36 1 5.2056 4.6981 -1.9972 37 1 5.1622 4.6227 -4.4748 38 1 3.6208 5.5126 -4.4751 39 1 5.6525 7.2529 -7.0057 40 1 2.8853 -3.5759 0.8905 41 1 2.8852 -3.5759 -0.8895 42 1 1.2453 -4.8662 -2.1313 43 1 -0.2543 -6.8193 -2.1302 44 1 -1.0016 -7.7967 0.0026 45 1 -0.2586 -6.8138 2.1347 46 1 1.2480 -4.8662 2.1337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497193154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:24 Heat of formation + Delta-G solvation = -148.285933 kcal Electronic energy + Delta-G solvation = -27042.005295 eV Core-core repulsion = 22896.828649 eV Total energy + Delta-G solvation = -4145.176646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91697 -40.00210 -39.58553 -37.43751 -36.23187 -35.80663 -33.35134 -32.71673 -31.74338 -31.39361 -30.18777 -27.42014 -26.97211 -25.41722 -24.29941 -23.07730 -21.86007 -21.26955 -20.76018 -20.20316 -18.42271 -17.79376 -17.41319 -16.98263 -16.82949 -16.26960 -16.15726 -15.87753 -15.59888 -15.40577 -14.82276 -14.47440 -14.38164 -14.22339 -13.87756 -13.83053 -13.34479 -13.03006 -12.93931 -12.80223 -12.72998 -12.56337 -12.38494 -12.27086 -11.59520 -11.58361 -11.32641 -11.20565 -11.04303 -10.94203 -10.78659 -10.75494 -10.68867 -10.26317 -9.64689 -9.64401 -9.40329 -9.37355 -9.30773 -9.14671 -8.44096 -6.10119 -4.14511 0.65234 0.92189 1.87790 2.52426 2.54758 3.10627 3.29046 3.31949 3.35539 3.40468 3.71191 4.26653 4.32529 4.39717 4.52521 4.64544 4.66499 4.74483 4.76979 4.83363 4.94366 5.03603 5.11368 5.16126 5.21476 5.26487 5.35871 5.42737 5.45628 5.54124 5.54896 5.72846 5.91859 5.98696 6.02227 6.07175 6.08495 6.09693 6.11076 6.47775 6.64082 6.96867 6.99302 7.56055 7.62627 7.86674 7.98506 8.17237 8.25923 8.91050 9.49898 11.01362 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.001528 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.689426 B =18325.466794 C =18787.038763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.597 5.597 3 C 0.143 3.857 4 C -0.135 4.135 5 C 0.462 3.538 6 O -0.520 6.520 7 O -0.357 6.357 8 C 0.075 3.925 9 C 0.024 3.976 10 C -0.527 4.527 11 H 0.059 0.941 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.647 3.353 19 O -0.565 6.565 20 O -0.362 6.362 21 C 0.127 3.873 22 C -0.098 4.098 23 C -0.093 4.093 24 C -0.124 4.124 25 C -0.109 4.109 26 C -0.125 4.125 27 C -0.094 4.094 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.477 -27.801 13.760 34.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.337 5.337 3 C 0.022 3.978 4 C -0.174 4.174 5 C 0.305 3.695 6 O -0.410 6.410 7 O -0.273 6.273 8 C 0.003 3.997 9 C -0.013 4.013 10 C -0.565 4.565 11 H 0.078 0.922 12 C -0.141 4.141 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 C 0.401 3.599 19 O -0.453 6.453 20 O -0.277 6.277 21 C 0.053 3.947 22 C -0.098 4.098 23 C -0.111 4.111 24 C -0.142 4.142 25 C -0.128 4.128 26 C -0.143 4.143 27 C -0.112 4.112 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.143 0.857 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.968 -27.650 13.854 34.358 hybrid contribution 0.572 0.930 -0.055 1.094 sum -14.396 -26.720 13.799 33.341 Atomic orbital electron populations 1.21843 0.78072 1.03810 1.02431 1.46643 1.07516 1.03214 1.76367 1.21285 0.99002 0.82228 0.95288 1.21715 1.02019 0.93764 0.99877 1.23211 0.77348 0.86321 0.82626 1.90641 1.52370 1.64698 1.33273 1.86524 1.68076 1.39440 1.33213 1.23658 0.93818 0.79296 1.02976 1.19175 0.97904 0.95979 0.88281 1.20986 1.36733 1.05831 0.92968 0.92234 1.24984 0.95898 0.98040 0.95222 1.69975 1.46204 1.39276 0.97364 0.86465 0.80070 0.83035 0.77699 1.20475 1.21052 1.19722 1.18069 0.83987 0.81304 0.76491 1.91043 1.12136 1.86852 1.55288 1.86292 1.40768 1.13670 1.86943 1.21731 0.91162 0.77919 1.03864 1.19535 1.00222 0.96154 0.93908 1.21149 0.96504 0.95824 0.97605 1.21193 0.98080 0.96495 0.98406 1.21269 0.99245 0.99644 0.92598 1.21179 0.98137 0.96555 0.98380 1.21124 0.96597 0.95915 0.97533 0.92205 0.90428 0.90275 0.88476 0.88252 0.87403 0.87590 0.92247 0.92238 0.95338 0.95350 0.92721 0.90113 0.90001 0.85593 0.85630 0.85821 0.85698 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.44 59.85 0.63 1.17 16 2 N -0.60 -6.05 2.87 -187.41 -0.54 -6.59 16 3 C 0.14 1.61 4.70 -4.04 -0.02 1.59 16 4 C -0.13 -1.65 6.14 -27.88 -0.17 -1.82 16 5 C 0.46 7.91 7.96 36.01 0.29 8.19 16 6 O -0.52 -10.00 15.73 -18.75 -0.30 -10.29 16 7 O -0.36 -7.17 10.22 -39.25 -0.40 -7.57 16 8 C 0.07 1.69 5.40 37.16 0.20 1.89 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 14 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.65 7.84 8.40 54.05 0.45 8.30 16 19 O -0.56 -8.65 15.71 -19.28 -0.30 -8.96 16 20 O -0.36 -3.72 9.03 -40.32 -0.36 -4.08 16 21 C 0.13 1.11 5.60 36.01 0.20 1.31 16 22 C -0.10 -0.75 5.52 -104.62 -0.58 -1.33 16 23 C -0.09 -0.65 9.70 -39.58 -0.38 -1.03 16 24 C -0.12 -0.74 10.05 -39.58 -0.40 -1.14 16 25 C -0.11 -0.61 10.05 -39.58 -0.40 -1.01 16 26 C -0.12 -0.72 10.05 -39.58 -0.40 -1.12 16 27 C -0.09 -0.64 9.70 -39.58 -0.38 -1.02 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.40 8.07 -51.93 -0.42 -0.01 16 30 H 0.08 0.51 7.38 -51.93 -0.38 0.12 16 31 H 0.10 0.95 8.03 -51.93 -0.42 0.53 16 32 H 0.10 1.33 7.38 -51.93 -0.38 0.94 16 33 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 36 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 41 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 42 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 43 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.12 0.43 8.06 -52.49 -0.42 0.01 16 45 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 401.66 15.07 6.05 6.05 Total: -1.00 -34.50 401.66 -8.71 -43.21 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -7.06 Total: -3.35 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.52 Total: 0.83 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.20 Total: -32.33 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -1.36 Total: -30.90 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.50 -8.71 -43.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497193154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.075 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds