Wall clock time and date at job start Tue Mar 31 2020 19:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00336 * 2 1 4 4 C 1.53005 * 109.47293 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46756 * 64.99740 * 4 3 2 6 6 C 1.46491 * 119.99971 * 269.99982 * 5 4 3 7 7 C 1.50706 * 109.47177 * 269.99824 * 6 5 4 8 8 H 1.08003 * 119.99521 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00034 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00149 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00053 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47360 * 89.99741 * 11 9 7 13 13 H 1.48506 * 109.47316 * 210.00329 * 11 9 7 14 14 H 1.48504 * 109.47032 * 330.00062 * 11 9 7 15 15 C 1.34780 * 119.99795 * 89.99885 * 5 4 3 16 16 O 1.21276 * 120.00313 * 179.97438 * 15 5 4 17 17 C 1.50700 * 119.99833 * 359.97438 * 15 5 4 18 18 C 1.53006 * 109.46952 * 179.97438 * 17 15 5 19 19 H 1.09001 * 109.70055 * 304.41853 * 18 17 15 20 20 C 1.53464 * 109.74096 * 183.81787 * 18 17 15 21 21 O 1.43183 * 108.23429 * 180.55184 * 20 18 17 22 22 C 1.36111 * 116.69497 * 46.25230 * 21 20 18 23 23 C 1.38703 * 119.39213 * 163.02682 * 22 21 20 24 24 C 1.38196 * 120.06576 * 180.09412 * 23 22 21 25 25 C 1.38255 * 120.11173 * 359.47653 * 24 23 22 26 26 C 1.38201 * 120.10919 * 0.33654 * 25 24 23 27 27 C 1.38701 * 120.07087 * 359.96733 * 26 25 24 28 28 O 1.36106 * 119.39571 * 179.77368 * 27 26 25 29 29 H 1.09004 * 109.47055 * 60.00169 * 1 2 3 30 30 H 1.08997 * 109.47223 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47435 * 300.00790 * 1 2 3 32 32 H 1.09002 * 109.47240 * 59.99448 * 3 2 1 33 33 H 1.08995 * 109.46882 * 299.99484 * 3 2 1 34 34 H 1.08993 * 109.47305 * 304.99905 * 4 3 2 35 35 H 1.08995 * 109.46832 * 184.99490 * 4 3 2 36 36 H 1.09001 * 109.47526 * 30.00526 * 6 5 4 37 37 H 1.09004 * 109.47115 * 150.00631 * 6 5 4 38 38 H 0.97002 * 120.00008 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.47198 * 59.99993 * 17 15 5 40 40 H 1.08995 * 109.47604 * 299.99411 * 17 15 5 41 41 H 1.08997 * 109.71336 * 300.23605 * 20 18 17 42 42 H 1.09005 * 109.71653 * 60.86799 * 20 18 17 43 43 H 1.07998 * 119.96926 * 359.81706 * 23 22 21 44 44 H 1.08002 * 119.94846 * 179.76222 * 24 23 22 45 45 H 1.07992 * 119.94650 * 180.31475 * 25 24 23 46 46 H 1.08008 * 119.96288 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1062 -0.8926 -1.3402 7 6 5.5017 -1.2983 -0.9412 8 1 6.2201 -0.5463 -0.6498 9 6 5.8612 -2.6293 -0.9482 10 7 4.9866 -3.5449 -1.3036 11 14 7.5907 -3.1322 -0.4530 12 1 7.6331 -3.3848 1.0098 13 1 7.9741 -4.3689 -1.1802 14 1 8.5401 -2.0426 -0.7948 15 6 4.2633 1.3327 -2.3201 16 8 4.6289 0.8190 -3.3560 17 6 4.1295 2.8310 -2.2283 18 6 4.5130 3.4604 -3.5691 19 1 5.5159 3.1404 -3.8517 20 6 4.4709 4.9901 -3.4546 21 8 4.8216 5.5445 -4.7273 22 6 4.2172 5.0004 -5.8187 23 6 4.2270 5.6949 -7.0193 24 6 3.6159 5.1563 -8.1357 25 6 3.0028 3.9194 -8.0620 26 6 2.9929 3.2205 -6.8698 27 6 3.5988 3.7581 -5.7439 28 8 3.5769 3.0600 -4.5757 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8508 0.5685 0.8426 35 1 3.9785 2.1764 0.0901 36 1 3.3856 -1.3633 -0.6713 37 1 3.9138 -1.2124 -2.3644 38 1 5.2397 -4.4813 -1.3088 39 1 4.7909 3.2077 -1.4480 40 1 3.0985 3.0896 -1.9869 41 1 3.4664 5.3106 -3.1782 42 1 5.1840 5.3222 -2.6999 43 1 4.7087 6.6596 -7.0806 44 1 3.6213 5.7005 -9.0686 45 1 2.5305 3.4987 -8.9373 46 1 2.5128 2.2545 -6.8147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590629524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:11 Heat of formation + Delta-G solvation = -120.651445 kcal Electronic energy + Delta-G solvation = -29537.347892 eV Core-core repulsion = 25393.369567 eV Total energy + Delta-G solvation = -4143.978324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30177 -39.21528 -37.78808 -37.47455 -37.10399 -34.81751 -33.06265 -32.43834 -30.68917 -29.64021 -29.25888 -27.79806 -26.48658 -25.89909 -24.03827 -22.82570 -22.72540 -22.23488 -20.61161 -19.00979 -18.31817 -17.54884 -16.86063 -16.72787 -16.41099 -16.04180 -15.63836 -15.31238 -15.06838 -15.03832 -14.77236 -14.68115 -14.44659 -14.13934 -13.96222 -13.83558 -13.61434 -12.96223 -12.85109 -12.45519 -12.14826 -11.94725 -11.91743 -11.77866 -11.71609 -11.56016 -11.27465 -11.18943 -10.89919 -10.88471 -10.83514 -10.43063 -10.35099 -10.09905 -9.55826 -9.44753 -8.89327 -8.67420 -8.34670 -8.06109 -7.60676 -5.95791 -4.00150 1.25641 1.29418 2.98909 3.15845 3.33691 3.39790 3.42008 3.46338 3.70268 3.76777 4.03098 4.22047 4.50093 4.58958 4.64484 4.74877 4.92429 5.00559 5.09978 5.14988 5.21394 5.27615 5.29806 5.37867 5.38180 5.43491 5.46612 5.50022 5.55525 5.59480 5.69356 5.71616 5.85166 5.87002 6.09687 6.18433 6.20346 6.41542 6.59375 6.92445 7.24863 7.39390 7.46807 7.59454 7.64307 8.01793 8.33546 8.47861 8.97025 9.13216 9.63731 11.12190 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011111 B = 0.003309 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.492658 B = 8460.929414 C = 9568.687202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.590 5.590 6 C 0.251 3.749 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.504 3.496 16 O -0.526 6.526 17 C -0.138 4.138 18 C 0.071 3.929 19 H 0.094 0.906 20 C 0.026 3.974 21 O -0.308 6.308 22 C 0.042 3.958 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.116 4.116 26 C -0.115 4.115 27 C 0.065 3.935 28 O -0.285 6.285 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.035 0.965 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.262 0.738 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.517 19.822 -3.182 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.035 4.035 4 C -0.014 4.014 5 N -0.322 5.322 6 C 0.132 3.868 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.532 5.532 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.290 3.710 16 O -0.402 6.402 17 C -0.178 4.178 18 C 0.013 3.987 19 H 0.112 0.888 20 C -0.050 4.050 21 O -0.222 6.222 22 C -0.003 4.003 23 C -0.135 4.135 24 C -0.144 4.144 25 C -0.134 4.134 26 C -0.133 4.133 27 C 0.019 3.981 28 O -0.199 6.199 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.140 0.860 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.211 19.131 -3.683 20.774 hybrid contribution 0.707 -0.140 0.625 0.954 sum -6.504 18.991 -3.059 20.306 Atomic orbital electron populations 1.22701 0.82008 1.02646 0.99098 1.88108 1.18748 1.26831 1.95121 1.23122 0.95380 0.85564 0.99448 1.21520 0.91192 0.98877 0.89793 1.48162 1.64395 1.09942 1.09666 1.19294 0.96641 0.71985 0.98872 1.21464 0.97512 0.92196 1.45324 0.92704 1.24916 0.97315 0.96453 0.95405 1.69948 1.34320 1.00950 1.47955 0.86545 0.84739 0.78075 0.78301 1.20723 1.21162 1.20016 1.19971 0.78967 0.87715 0.84358 1.90714 1.45954 1.74507 1.29040 1.21808 1.04397 0.96071 0.95546 1.22854 0.94397 0.93006 0.88400 0.88785 1.23703 1.03115 0.93592 0.84546 1.86281 1.64227 1.58476 1.13234 1.18951 1.00272 0.92248 0.88847 1.20382 1.02262 1.00292 0.90519 1.20855 0.99288 0.96321 0.97889 1.20911 1.00434 0.95041 0.97039 1.20544 1.01914 1.00910 0.89954 1.19043 1.00924 0.90080 0.88078 1.86462 1.56103 1.55566 1.21789 0.94582 0.89737 0.94692 0.93095 0.93772 0.88881 0.90211 0.93677 0.94311 0.92853 0.87080 0.88478 0.90551 0.85954 0.85128 0.85353 0.85249 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.31 9.53 -35.23 -0.34 -6.65 16 3 C 0.04 0.59 6.28 37.16 0.23 0.82 16 4 C 0.11 1.71 5.62 -4.04 -0.02 1.69 16 5 N -0.59 -12.35 2.42 -175.06 -0.42 -12.77 16 6 C 0.25 6.71 4.98 -5.20 -0.03 6.69 16 7 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 8 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 11 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.50 10.29 7.56 -10.98 -0.08 10.21 16 16 O -0.53 -13.40 15.02 -8.64 -0.13 -13.53 16 17 C -0.14 -1.87 3.99 -27.88 -0.11 -1.98 16 18 C 0.07 1.02 2.55 -26.49 -0.07 0.95 16 19 H 0.09 1.54 7.98 -51.93 -0.41 1.12 16 20 C 0.03 0.28 6.56 37.40 0.25 0.53 16 21 O -0.31 -4.09 10.42 -32.87 -0.34 -4.43 16 22 C 0.04 0.58 6.49 -39.14 -0.25 0.33 16 23 C -0.12 -1.35 9.96 -39.43 -0.39 -1.75 16 24 C -0.13 -1.29 10.04 -39.59 -0.40 -1.69 16 25 C -0.12 -1.28 10.04 -39.59 -0.40 -1.68 16 26 C -0.11 -1.59 9.96 -39.42 -0.39 -1.98 16 27 C 0.06 1.00 6.49 -39.14 -0.25 0.74 16 28 O -0.29 -4.88 9.32 -44.38 -0.41 -5.29 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.58 7.30 -51.93 -0.38 0.20 16 34 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 35 H 0.08 0.89 6.44 -51.93 -0.33 0.56 16 36 H 0.05 1.26 7.11 -51.93 -0.37 0.89 16 37 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.11 1.11 7.40 -51.93 -0.38 0.73 16 40 H 0.10 1.10 7.26 -51.93 -0.38 0.72 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.14 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 383.43 15.07 5.78 5.78 Total: -1.00 -37.28 383.43 -8.22 -45.50 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.84 Total: 0.01 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -1.23 Total: 0.65 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.31 Total: -39.19 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.22 Total: -29.91 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.28 -8.22 -45.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590629524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.151 kcal (2) G-P(sol) polarization free energy of solvation -37.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds