Wall clock time and date at job start Tue Mar 31 2020 19:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00336 * 2 1 4 4 C 1.53005 * 109.47293 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46756 * 64.99740 * 4 3 2 6 6 C 1.46491 * 119.99971 * 269.99982 * 5 4 3 7 7 C 1.50706 * 109.47177 * 269.99824 * 6 5 4 8 8 H 1.08003 * 119.99521 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00034 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00149 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00053 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47360 * 89.99741 * 11 9 7 13 13 H 1.48506 * 109.47316 * 210.00329 * 11 9 7 14 14 H 1.48504 * 109.47032 * 330.00062 * 11 9 7 15 15 C 1.34780 * 119.99795 * 89.99885 * 5 4 3 16 16 O 1.21276 * 120.00313 * 179.97438 * 15 5 4 17 17 C 1.50700 * 119.99833 * 359.97438 * 15 5 4 18 18 C 1.53006 * 109.46952 * 179.97438 * 17 15 5 19 19 H 1.09001 * 109.70055 * 304.41853 * 18 17 15 20 20 C 1.53464 * 109.74096 * 183.81787 * 18 17 15 21 21 O 1.43183 * 108.23429 * 180.55184 * 20 18 17 22 22 C 1.36111 * 116.69497 * 46.25230 * 21 20 18 23 23 C 1.38703 * 119.39213 * 163.02682 * 22 21 20 24 24 C 1.38196 * 120.06576 * 180.09412 * 23 22 21 25 25 C 1.38255 * 120.11173 * 359.47653 * 24 23 22 26 26 C 1.38201 * 120.10919 * 0.33654 * 25 24 23 27 27 C 1.38701 * 120.07087 * 359.96733 * 26 25 24 28 28 O 1.36106 * 119.39571 * 179.77368 * 27 26 25 29 29 H 1.09004 * 109.47055 * 60.00169 * 1 2 3 30 30 H 1.08997 * 109.47223 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47435 * 300.00790 * 1 2 3 32 32 H 1.09002 * 109.47240 * 59.99448 * 3 2 1 33 33 H 1.08995 * 109.46882 * 299.99484 * 3 2 1 34 34 H 1.08993 * 109.47305 * 304.99905 * 4 3 2 35 35 H 1.08995 * 109.46832 * 184.99490 * 4 3 2 36 36 H 1.09001 * 109.47526 * 30.00526 * 6 5 4 37 37 H 1.09004 * 109.47115 * 150.00631 * 6 5 4 38 38 H 0.97002 * 120.00008 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.47198 * 59.99993 * 17 15 5 40 40 H 1.08995 * 109.47604 * 299.99411 * 17 15 5 41 41 H 1.08997 * 109.71336 * 300.23605 * 20 18 17 42 42 H 1.09005 * 109.71653 * 60.86799 * 20 18 17 43 43 H 1.07998 * 119.96926 * 359.81706 * 23 22 21 44 44 H 1.08002 * 119.94846 * 179.76222 * 24 23 22 45 45 H 1.07992 * 119.94650 * 180.31475 * 25 24 23 46 46 H 1.08008 * 119.96288 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1062 -0.8926 -1.3402 7 6 5.5017 -1.2983 -0.9412 8 1 6.2201 -0.5463 -0.6498 9 6 5.8612 -2.6293 -0.9482 10 7 4.9866 -3.5449 -1.3036 11 14 7.5907 -3.1322 -0.4530 12 1 7.6331 -3.3848 1.0098 13 1 7.9741 -4.3689 -1.1802 14 1 8.5401 -2.0426 -0.7948 15 6 4.2633 1.3327 -2.3201 16 8 4.6289 0.8190 -3.3560 17 6 4.1295 2.8310 -2.2283 18 6 4.5130 3.4604 -3.5691 19 1 5.5159 3.1404 -3.8517 20 6 4.4709 4.9901 -3.4546 21 8 4.8216 5.5445 -4.7273 22 6 4.2172 5.0004 -5.8187 23 6 4.2270 5.6949 -7.0193 24 6 3.6159 5.1563 -8.1357 25 6 3.0028 3.9194 -8.0620 26 6 2.9929 3.2205 -6.8698 27 6 3.5988 3.7581 -5.7439 28 8 3.5769 3.0600 -4.5757 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8508 0.5685 0.8426 35 1 3.9785 2.1764 0.0901 36 1 3.3856 -1.3633 -0.6713 37 1 3.9138 -1.2124 -2.3644 38 1 5.2397 -4.4813 -1.3088 39 1 4.7909 3.2077 -1.4480 40 1 3.0985 3.0896 -1.9869 41 1 3.4664 5.3106 -3.1782 42 1 5.1840 5.3222 -2.6999 43 1 4.7087 6.6596 -7.0806 44 1 3.6213 5.7005 -9.0686 45 1 2.5305 3.4987 -8.9373 46 1 2.5128 2.2545 -6.8147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590629524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:10 Heat of formation + Delta-G solvation = -146.516260 kcal Electronic energy + Delta-G solvation = -29538.469474 eV Core-core repulsion = 25393.369567 eV Total energy + Delta-G solvation = -4145.099907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.30649 -40.73108 -38.84816 -38.56754 -38.18577 -36.49828 -34.86835 -33.89868 -31.62115 -31.13648 -30.31367 -29.23840 -27.86744 -27.09259 -25.36859 -24.31917 -23.85517 -23.54384 -21.59881 -20.26530 -19.62284 -18.62562 -18.53876 -17.99926 -17.90928 -17.28121 -16.97113 -16.69301 -16.32194 -16.16461 -16.06871 -15.83133 -15.67048 -15.43192 -15.20004 -14.83474 -14.74042 -14.38667 -14.30049 -13.82325 -13.57984 -13.35079 -13.07117 -12.99946 -12.83980 -12.77451 -12.71293 -12.68780 -12.51914 -12.18553 -12.11970 -11.94252 -11.90637 -11.67486 -11.40025 -10.63006 -10.60683 -10.50088 -9.62967 -9.38744 -9.04888 -8.19035 -6.34335 0.30791 0.34540 1.35115 1.38985 1.48867 1.85530 2.05438 2.23126 2.30546 2.44352 2.75905 2.98938 3.10247 3.18673 3.54058 3.58482 3.79022 3.92716 4.12825 4.15828 4.21936 4.27155 4.32554 4.37092 4.43048 4.46774 4.47891 4.53253 4.55266 4.61266 4.66287 4.69195 4.85251 4.91652 4.99038 5.19562 5.21797 5.24542 5.30007 5.51330 5.59735 5.74066 5.89367 5.97292 6.10655 6.35926 6.45826 6.74767 6.85492 7.31064 7.52892 8.88166 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011111 B = 0.003309 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.492658 B = 8460.929414 C = 9568.687202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.419 6.419 3 C 0.042 3.958 4 C 0.103 3.897 5 N -0.597 5.597 6 C 0.274 3.726 7 C -0.541 4.541 8 H 0.056 0.944 9 C 0.003 3.997 10 N -0.931 5.931 11 Si 0.970 3.030 12 H -0.262 1.262 13 H -0.283 1.283 14 H -0.271 1.271 15 C 0.492 3.508 16 O -0.593 6.593 17 C -0.119 4.119 18 C 0.063 3.937 19 H 0.060 0.940 20 C 0.033 3.967 21 O -0.316 6.316 22 C 0.027 3.973 23 C -0.119 4.119 24 C -0.114 4.114 25 C -0.113 4.113 26 C -0.141 4.141 27 C 0.029 3.971 28 O -0.319 6.319 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.025 0.975 37 H -0.019 1.019 38 H 0.265 0.735 39 H 0.159 0.841 40 H 0.129 0.871 41 H 0.096 0.904 42 H 0.161 0.839 43 H 0.155 0.845 44 H 0.168 0.832 45 H 0.157 0.843 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 23.539 -2.162 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.339 6.339 3 C -0.035 4.035 4 C -0.020 4.020 5 N -0.327 5.327 6 C 0.152 3.848 7 C -0.580 4.580 8 H 0.075 0.925 9 C -0.196 4.196 10 N -0.571 5.571 11 Si 0.794 3.206 12 H -0.187 1.187 13 H -0.209 1.209 14 H -0.195 1.195 15 C 0.281 3.719 16 O -0.474 6.474 17 C -0.158 4.158 18 C 0.007 3.993 19 H 0.078 0.922 20 C -0.042 4.042 21 O -0.231 6.231 22 C -0.018 4.018 23 C -0.137 4.137 24 C -0.132 4.132 25 C -0.131 4.131 26 C -0.160 4.160 27 C -0.016 4.016 28 O -0.234 6.234 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.043 0.957 37 H -0.001 1.001 38 H 0.074 0.926 39 H 0.177 0.823 40 H 0.147 0.853 41 H 0.114 0.886 42 H 0.179 0.821 43 H 0.172 0.828 44 H 0.185 0.815 45 H 0.175 0.825 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.780 22.900 -2.618 24.026 hybrid contribution 0.494 -1.300 0.232 1.410 sum -6.286 21.600 -2.387 22.622 Atomic orbital electron populations 1.22833 0.80172 1.02941 1.00768 1.88049 1.21049 1.29291 1.95520 1.23250 0.93708 0.84724 1.01830 1.21964 0.93057 1.00656 0.86306 1.48136 1.64565 1.07758 1.12255 1.18568 0.95458 0.76176 0.94579 1.21781 0.98298 0.92647 1.45273 0.92543 1.25922 1.01977 0.96477 0.95194 1.70096 1.36700 1.01379 1.48903 0.85391 0.78895 0.77533 0.78807 1.18674 1.20891 1.19541 1.21211 0.77120 0.90682 0.82905 1.90679 1.48743 1.76410 1.31529 1.21837 1.07481 0.89872 0.96651 1.22945 0.92442 0.95870 0.88093 0.92164 1.23921 1.05562 0.90292 0.84398 1.86249 1.64510 1.58480 1.13870 1.19212 1.00473 0.92052 0.90028 1.20814 1.01917 1.01041 0.89955 1.21331 0.97244 0.95700 0.98929 1.21271 0.99904 0.95254 0.96647 1.20740 1.02921 1.01099 0.91215 1.19383 1.02838 0.91239 0.88103 1.86409 1.56921 1.57115 1.23000 0.94029 0.90360 0.91705 0.88652 0.93043 0.90538 0.84792 0.95672 1.00133 0.92619 0.82318 0.85328 0.88566 0.82108 0.82778 0.81487 0.82525 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.42 -14.43 9.53 -148.98 -1.42 -15.84 16 3 C 0.04 1.06 6.28 71.98 0.45 1.51 16 4 C 0.10 2.99 5.62 86.38 0.49 3.48 16 5 N -0.60 -25.62 2.42 -826.16 -2.00 -27.62 16 6 C 0.27 15.65 4.98 85.64 0.43 16.07 16 7 C -0.54 -32.36 9.39 25.60 0.24 -32.12 16 8 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 9 C 0.00 0.16 5.46 84.65 0.46 0.62 16 10 N -0.93 -59.15 13.29 21.45 0.28 -58.86 16 11 Si 0.97 46.37 29.54 68.60 2.03 48.39 16 12 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 13 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 15 C 0.49 20.65 7.56 87.66 0.66 21.31 16 16 O -0.59 -32.52 15.02 10.56 0.16 -32.36 16 17 C -0.12 -2.99 3.99 29.85 0.12 -2.87 16 18 C 0.06 1.81 2.55 30.75 0.08 1.89 16 19 H 0.06 2.07 7.98 -2.39 -0.02 2.05 16 20 C 0.03 0.63 6.56 72.14 0.47 1.10 16 21 O -0.32 -7.88 10.42 -82.58 -0.86 -8.74 16 22 C 0.03 0.75 6.49 22.56 0.15 0.89 16 23 C -0.12 -2.53 9.96 22.37 0.22 -2.31 16 24 C -0.11 -2.05 10.04 22.26 0.22 -1.82 16 25 C -0.11 -2.38 10.04 22.26 0.22 -2.16 16 26 C -0.14 -4.12 9.96 22.37 0.22 -3.89 16 27 C 0.03 0.95 6.49 22.56 0.15 1.09 16 28 O -0.32 -11.47 9.32 -71.52 -0.67 -12.13 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.22 7.30 -2.39 -0.02 1.20 16 34 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 35 H 0.13 2.38 6.44 -2.39 -0.02 2.37 16 36 H 0.03 1.52 7.11 -2.39 -0.02 1.50 16 37 H -0.02 -1.32 7.42 -2.39 -0.02 -1.34 16 38 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.16 2.42 7.40 -2.39 -0.02 2.40 16 40 H 0.13 2.46 7.26 -2.39 -0.02 2.44 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.16 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 44 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 45 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 46 H 0.12 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -92.08 383.43 4.33 -87.74 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.98 Total: 14.66 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 5.83 Total: 4.77 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -1.71 Total: -86.48 kcal Atomic # 8 Polarization: -66.29 SS G_CDS: -2.79 Total: -69.08 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -92.08 4.33 -87.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590629524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.775 kcal (2) G-P(sol) polarization free energy of solvation -92.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds