Wall clock time and date at job start Tue Mar 31 2020 19:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99647 * 2 1 4 4 C 1.53001 * 109.46974 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47147 * 65.00021 * 4 3 2 6 6 C 1.46506 * 119.99936 * 89.99619 * 5 4 3 7 7 C 1.50703 * 109.46877 * 90.00092 * 6 5 4 8 8 H 1.08005 * 119.99817 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00081 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99848 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00321 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46844 * 60.00490 * 11 9 7 13 13 H 1.48496 * 109.47153 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47045 * 300.00555 * 11 9 7 15 15 C 1.34773 * 120.00036 * 270.27655 * 5 4 3 16 16 O 1.21281 * 120.00220 * 179.72597 * 15 5 4 17 17 C 1.50706 * 120.00080 * 359.72107 * 15 5 4 18 18 C 1.52992 * 109.47274 * 180.02562 * 17 15 5 19 19 H 1.08992 * 109.71047 * 54.40855 * 18 17 15 20 20 C 1.53475 * 109.71041 * 175.00336 * 18 17 15 21 21 O 1.43171 * 108.25087 * 179.41712 * 20 18 17 22 22 C 1.36106 * 116.71678 * 313.82660 * 21 20 18 23 23 C 1.38699 * 119.40368 * 197.17794 * 22 21 20 24 24 C 1.38199 * 120.06920 * 180.20964 * 23 22 21 25 25 C 1.38248 * 120.11297 * 359.93067 * 24 23 22 26 26 C 1.38189 * 120.11322 * 359.97438 * 25 24 23 27 27 C 1.38704 * 120.06888 * 0.02562 * 26 25 24 28 28 O 1.36103 * 119.39734 * 180.28152 * 27 26 25 29 29 H 1.09005 * 109.46347 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46891 * 299.99636 * 1 2 3 31 31 H 1.08992 * 109.47366 * 60.00615 * 1 2 3 32 32 H 1.09002 * 109.47036 * 59.99968 * 3 2 1 33 33 H 1.08995 * 109.47091 * 299.99979 * 3 2 1 34 34 H 1.08994 * 109.47531 * 304.99693 * 4 3 2 35 35 H 1.09005 * 109.46544 * 184.99629 * 4 3 2 36 36 H 1.09000 * 109.46803 * 209.99571 * 6 5 4 37 37 H 1.09000 * 109.47214 * 330.00364 * 6 5 4 38 38 H 0.96998 * 119.99944 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.46762 * 300.00389 * 17 15 5 40 40 H 1.08998 * 109.46924 * 59.99727 * 17 15 5 41 41 H 1.09004 * 109.70403 * 299.10578 * 20 18 17 42 42 H 1.08999 * 109.70774 * 59.72617 * 20 18 17 43 43 H 1.07999 * 119.96353 * 0.15995 * 23 22 21 44 44 H 1.08001 * 119.94253 * 179.97438 * 24 23 22 45 45 H 1.08006 * 119.94323 * 179.97438 * 25 24 23 46 46 H 1.08007 * 119.97044 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.2882 1.4000 -2.4130 7 6 5.7461 1.7805 -2.3817 8 1 6.3775 1.4340 -1.5769 9 6 6.2741 2.5701 -3.3811 10 7 5.5053 2.9916 -4.3614 11 14 8.0809 3.0424 -3.3419 12 1 8.9145 1.8139 -3.3774 13 1 8.3967 3.8895 -4.5200 14 1 8.3678 3.7995 -2.0971 15 6 4.0906 -0.7762 -1.3348 16 8 4.4511 -1.2903 -2.3724 17 6 3.7701 -1.6360 -0.1394 18 6 3.9802 -3.1082 -0.4990 19 1 4.9885 -3.2515 -0.8870 20 6 3.7765 -3.9798 0.7478 21 8 3.9665 -5.3486 0.3738 22 6 3.3479 -5.7633 -0.7654 23 6 3.1860 -7.1212 -0.9969 24 6 2.5637 -7.5576 -2.1511 25 6 2.0996 -6.6422 -3.0774 26 6 2.2559 -5.2878 -2.8521 27 6 2.8796 -4.8431 -1.6957 28 8 3.0211 -3.5060 -1.4850 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5137 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5687 0.8427 35 1 3.9783 2.1768 0.0902 36 1 4.0772 0.8447 -3.3269 37 1 3.6767 2.3019 -2.3863 38 1 5.8766 3.5475 -5.0643 39 1 4.4268 -1.3672 0.6881 40 1 2.7324 -1.4778 0.1543 41 1 4.5028 -3.7033 1.5121 42 1 2.7662 -3.8406 1.1325 43 1 3.5473 -7.8383 -0.2747 44 1 2.4391 -8.6154 -2.3294 45 1 1.6141 -6.9863 -3.9787 46 1 1.8929 -4.5748 -3.5775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590629525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:14 Heat of formation + Delta-G solvation = -121.523628 kcal Electronic energy + Delta-G solvation = -29881.978667 eV Core-core repulsion = 25737.962522 eV Total energy + Delta-G solvation = -4144.016145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.20122 -39.18227 -37.75854 -37.48128 -37.03067 -34.84982 -32.93976 -32.44383 -30.62090 -29.61763 -29.20615 -27.74505 -26.52167 -26.01298 -23.94431 -22.84681 -22.68423 -22.20269 -20.52108 -18.90483 -18.19622 -17.47230 -16.78759 -16.65140 -16.44601 -16.28447 -15.61230 -15.32199 -15.14090 -15.00438 -14.77465 -14.63210 -14.31717 -14.12686 -13.83487 -13.71209 -13.56937 -12.85402 -12.74501 -12.44343 -12.29706 -11.94832 -11.88283 -11.76322 -11.67374 -11.48983 -11.20829 -11.13995 -11.03401 -10.87550 -10.61728 -10.53635 -10.29092 -10.14289 -9.67303 -9.55251 -8.80862 -8.60668 -8.43061 -7.97845 -7.62911 -6.03935 -4.09012 1.31938 1.36396 3.08659 3.27971 3.31163 3.36217 3.38878 3.58456 3.77169 3.80541 3.88960 4.30576 4.45614 4.67222 4.81997 4.89039 4.98994 5.12530 5.20137 5.22711 5.27393 5.28815 5.32047 5.38370 5.40989 5.43714 5.46590 5.58549 5.65083 5.67704 5.69389 5.87722 5.92421 6.09556 6.15068 6.24735 6.28289 6.47203 6.66126 7.00732 7.07194 7.20417 7.47891 7.56722 7.59140 7.92905 8.24320 8.45820 8.91658 9.18454 9.56514 11.03955 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011720 B = 0.003453 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.443635 B = 8106.801876 C = 9241.189239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.040 3.960 4 C 0.115 3.885 5 N -0.598 5.598 6 C 0.248 3.752 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.519 3.481 16 O -0.533 6.533 17 C -0.143 4.143 18 C 0.072 3.928 19 H 0.090 0.910 20 C 0.026 3.974 21 O -0.309 6.309 22 C 0.042 3.958 23 C -0.116 4.116 24 C -0.127 4.127 25 C -0.117 4.117 26 C -0.116 4.116 27 C 0.066 3.934 28 O -0.283 6.283 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.029 0.971 38 H 0.264 0.736 39 H 0.104 0.896 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.248 -13.104 12.433 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.038 4.038 4 C -0.010 4.010 5 N -0.330 5.330 6 C 0.129 3.871 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.306 3.694 16 O -0.409 6.409 17 C -0.183 4.183 18 C 0.015 3.985 19 H 0.108 0.892 20 C -0.049 4.049 21 O -0.223 6.223 22 C -0.003 4.003 23 C -0.135 4.135 24 C -0.145 4.145 25 C -0.135 4.135 26 C -0.135 4.135 27 C 0.020 3.980 28 O -0.196 6.196 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.095 0.905 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.907 -13.343 11.726 20.339 hybrid contribution 0.811 0.903 0.106 1.218 sum -9.096 -12.440 11.831 19.429 Atomic orbital electron populations 1.22687 0.81650 1.02354 0.99685 1.87816 1.19280 1.28074 1.95406 1.23197 0.95271 0.84792 1.00514 1.21508 0.91083 1.00581 0.87857 1.48093 1.65380 1.05858 1.13636 1.19233 0.95596 0.89043 0.83221 1.21413 0.94909 1.31062 1.09216 0.92525 1.24934 0.98064 0.95950 0.95123 1.69927 1.35733 1.35628 1.12069 0.86572 0.85122 0.78432 0.77363 1.20191 1.21196 1.20274 1.19919 0.77857 0.82639 0.89010 1.90695 1.46498 1.72600 1.31134 1.21922 1.06479 0.90967 0.98911 1.22862 0.93434 0.94606 0.87600 0.89201 1.23704 1.03863 0.79987 0.97363 1.86265 1.68971 1.28126 1.38986 1.18957 1.00535 0.93573 0.87252 1.20376 1.01838 0.92108 0.99185 1.20833 0.99996 0.99681 0.94005 1.20892 1.00915 0.91942 0.99739 1.20527 1.01672 0.96150 0.95110 1.19073 1.00845 0.83432 0.94638 1.86486 1.57531 1.18127 1.57500 0.90056 0.94461 0.94138 0.92841 0.92522 0.90900 0.88355 0.93881 0.95328 0.92684 0.87839 0.85664 0.86097 0.90462 0.85201 0.85439 0.85340 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.39 -5.31 7.40 -35.23 -0.26 -5.57 16 3 C 0.04 0.53 6.28 37.16 0.23 0.76 16 4 C 0.11 1.75 5.78 -4.04 -0.02 1.73 16 5 N -0.60 -12.50 2.44 -175.05 -0.43 -12.93 16 6 C 0.25 6.46 5.17 -5.19 -0.03 6.43 16 7 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 11 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.52 11.01 7.26 -10.98 -0.08 10.93 16 16 O -0.53 -13.90 15.05 -7.27 -0.11 -14.01 16 17 C -0.14 -2.18 3.91 -27.88 -0.11 -2.29 16 18 C 0.07 1.13 2.55 -26.49 -0.07 1.06 16 19 H 0.09 1.57 7.94 -51.93 -0.41 1.16 16 20 C 0.03 0.32 6.56 37.40 0.25 0.56 16 21 O -0.31 -4.36 10.42 -32.87 -0.34 -4.70 16 22 C 0.04 0.61 6.49 -39.14 -0.25 0.36 16 23 C -0.12 -1.42 9.96 -39.43 -0.39 -1.82 16 24 C -0.13 -1.36 10.04 -39.59 -0.40 -1.76 16 25 C -0.12 -1.34 10.04 -39.60 -0.40 -1.74 16 26 C -0.12 -1.67 9.96 -39.43 -0.39 -2.06 16 27 C 0.07 1.07 6.49 -39.14 -0.25 0.82 16 28 O -0.28 -5.10 9.40 -43.73 -0.41 -5.51 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.91 6.45 -51.93 -0.33 0.58 16 35 H 0.10 1.48 8.07 -51.93 -0.42 1.07 16 36 H 0.04 1.29 7.41 -51.93 -0.38 0.91 16 37 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.10 1.24 7.41 -51.93 -0.38 0.86 16 40 H 0.13 1.81 5.10 -51.93 -0.26 1.54 16 41 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 46 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -35.67 381.00 -8.13 -43.81 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.82 Total: 1.30 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.22 Total: 0.95 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.31 Total: -38.78 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -1.12 Total: -29.80 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.67 -8.13 -43.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590629525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.718 kcal (2) G-P(sol) polarization free energy of solvation -35.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds