Wall clock time and date at job start Tue Mar 31 2020 19:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99545 * 2 1 4 4 C 1.53001 * 109.47200 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46592 * 65.00293 * 4 3 2 6 6 C 1.37101 * 119.99997 * 269.99655 * 5 4 3 7 7 H 1.08001 * 119.99766 * 50.36148 * 6 5 4 8 8 C 1.38953 * 119.99982 * 230.35642 * 6 5 4 9 9 N 1.31409 * 119.99638 * 203.00230 * 8 6 5 10 10 Si 1.86799 * 120.00189 * 22.99871 * 8 6 5 11 11 H 1.48495 * 109.47147 * 92.25350 * 10 8 6 12 12 H 1.48493 * 109.46979 * 212.25649 * 10 8 6 13 13 H 1.48504 * 109.47019 * 332.25547 * 10 8 6 14 14 C 1.34774 * 119.99929 * 90.00657 * 5 4 3 15 15 O 1.21290 * 120.00084 * 5.30823 * 14 5 4 16 16 C 1.50695 * 119.99971 * 185.31080 * 14 5 4 17 17 H 1.08997 * 109.69962 * 308.58906 * 16 14 5 18 18 C 1.53408 * 109.69814 * 69.14978 * 16 14 5 19 19 O 1.42904 * 108.33098 * 184.45009 * 18 16 14 20 20 C 1.35858 * 117.88078 * 310.84722 * 19 18 16 21 21 C 1.39057 * 118.43985 * 197.03563 * 20 19 18 22 22 C 1.38449 * 120.17789 * 180.22527 * 21 20 19 23 23 O 1.35897 * 120.08407 * 179.97438 * 22 21 20 24 24 C 1.42904 * 117.00169 * 180.02562 * 23 22 21 25 25 C 1.38801 * 119.83636 * 0.02562 * 22 21 20 26 26 C 1.38001 * 119.92595 * 359.92307 * 25 22 21 27 27 C 1.38424 * 121.80430 * 17.13526 * 20 19 18 28 28 C 1.50784 * 121.39077 * 359.64171 * 27 20 19 29 29 H 1.08997 * 109.47056 * 299.99186 * 1 2 3 30 30 H 1.08997 * 109.47875 * 59.99614 * 1 2 3 31 31 H 1.09000 * 109.46819 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.46847 * 60.00639 * 3 2 1 33 33 H 1.08998 * 109.47460 * 300.00583 * 3 2 1 34 34 H 1.09006 * 109.47061 * 305.00938 * 4 3 2 35 35 H 1.08996 * 109.47573 * 185.00178 * 4 3 2 36 36 H 0.97003 * 120.00336 * 180.02562 * 9 8 6 37 37 H 1.09007 * 109.68353 * 304.21894 * 18 16 14 38 38 H 1.08993 * 109.68689 * 64.78166 * 18 16 14 39 39 H 1.08002 * 119.91111 * 0.23821 * 21 20 19 40 40 H 1.08997 * 109.46748 * 179.97438 * 24 23 22 41 41 H 1.08997 * 109.46869 * 299.99942 * 24 23 22 42 42 H 1.09000 * 109.47256 * 59.99941 * 24 23 22 43 43 H 1.07999 * 120.03595 * 179.90423 * 25 22 21 44 44 H 1.08005 * 119.80589 * 180.02562 * 26 25 22 45 45 H 1.08995 * 109.43849 * 257.66807 * 28 27 20 46 46 H 1.09000 * 109.43819 * 137.79045 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9755 0.5647 -1.2528 6 6 4.0969 -0.7983 -1.3372 7 1 3.2831 -1.4335 -1.0199 8 6 5.2668 -1.3624 -1.8309 9 7 5.2492 -2.5758 -2.3352 10 14 6.8645 -0.3961 -1.7778 11 1 7.5925 -0.7118 -0.5226 12 1 7.7056 -0.7658 -2.9443 13 1 6.5654 1.0578 -1.8241 14 6 4.2613 1.3341 -2.3218 15 8 4.2476 2.5427 -2.2202 16 6 4.5979 0.6929 -3.6433 17 1 5.3821 -0.0508 -3.5017 18 6 3.3475 0.0214 -4.2256 19 8 3.7216 -0.6641 -5.4224 20 6 4.4538 0.0169 -6.3422 21 6 4.5218 -0.4845 -7.6374 22 6 5.2616 0.1780 -8.6022 23 8 5.3272 -0.3140 -9.8673 24 6 6.1095 0.4220 -10.8099 25 6 5.9369 1.3453 -8.2738 26 6 5.8676 1.8424 -6.9883 27 6 5.1266 1.1831 -6.0207 28 6 5.0734 1.7625 -4.6297 29 1 -0.3633 0.5137 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8901 33 1 1.6884 1.8465 -0.8899 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1767 0.0889 36 1 6.0660 -2.9698 -2.6796 37 1 2.9433 -0.6897 -3.5050 38 1 2.5977 0.7782 -4.4556 39 1 3.9961 -1.3930 -7.8916 40 1 6.0778 -0.0784 -11.7777 41 1 5.7065 1.4299 -10.9081 42 1 7.1413 0.4754 -10.4626 43 1 6.5161 1.8639 -9.0235 44 1 6.3936 2.7511 -6.7350 45 1 4.3810 2.6042 -4.6135 46 1 6.0671 2.1055 -4.3414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590892192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:24 Heat of formation + Delta-G solvation = -112.387190 kcal Electronic energy + Delta-G solvation = -30422.076770 eV Core-core repulsion = 26278.456810 eV Total energy + Delta-G solvation = -4143.619959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.63591 -39.49134 -38.58532 -37.21476 -36.20012 -34.79347 -33.61421 -32.16617 -30.34781 -30.03211 -29.08065 -27.29594 -26.00042 -25.07224 -24.55442 -23.79415 -22.43937 -21.93935 -20.21763 -18.89822 -18.29116 -17.62954 -16.48381 -16.13175 -16.09898 -15.83661 -15.70493 -15.56536 -14.98583 -14.83294 -14.56070 -14.49996 -14.29670 -13.97602 -13.45055 -13.32537 -13.11216 -12.87489 -12.79340 -12.56199 -12.55270 -12.30412 -11.84921 -11.68475 -11.47780 -11.38483 -11.21016 -11.01324 -10.88391 -10.77659 -10.61045 -10.31188 -10.19125 -10.01677 -9.87228 -9.23513 -9.00647 -8.68245 -8.22031 -7.69405 -7.62815 -6.50304 -4.19586 1.57461 1.64551 3.06486 3.12173 3.19935 3.26469 3.58944 3.88932 4.03270 4.07878 4.27138 4.37858 4.87025 4.87986 5.05337 5.06363 5.12450 5.18147 5.31609 5.37464 5.38692 5.49090 5.51259 5.60002 5.72039 5.72091 5.78621 5.84442 5.90675 5.94870 6.01933 6.09005 6.16891 6.23295 6.35087 6.44008 6.49143 6.52588 6.62705 6.65585 6.71291 6.84374 7.46362 7.59502 7.67548 7.72469 7.89562 8.57768 8.93113 9.24709 9.64766 10.57566 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.003816 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.434873 B = 7335.120176 C = 7713.051578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.054 3.946 4 C 0.108 3.892 5 N -0.459 5.459 6 C -0.350 4.350 7 H 0.112 0.888 8 C 0.080 3.920 9 N -0.838 5.838 10 Si 0.837 3.163 11 H -0.275 1.275 12 H -0.276 1.276 13 H -0.255 1.255 14 C 0.498 3.502 15 O -0.594 6.594 16 C -0.132 4.132 17 H 0.105 0.895 18 C 0.087 3.913 19 O -0.298 6.298 20 C 0.179 3.821 21 C -0.188 4.188 22 C 0.150 3.850 23 O -0.317 6.317 24 C 0.030 3.970 25 C -0.245 4.245 26 C -0.047 4.047 27 C -0.189 4.189 28 C -0.060 4.060 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.277 0.723 37 H 0.140 0.860 38 H 0.054 0.946 39 H 0.137 0.863 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.086 0.914 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 6.150 -8.036 10.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.024 4.024 4 C -0.016 4.016 5 N -0.179 5.179 6 C -0.477 4.477 7 H 0.129 0.871 8 C -0.129 4.129 9 N -0.471 5.471 10 Si 0.661 3.339 11 H -0.201 1.201 12 H -0.202 1.202 13 H -0.179 1.179 14 C 0.287 3.713 15 O -0.479 6.479 16 C -0.153 4.153 17 H 0.123 0.877 18 C 0.012 3.988 19 O -0.211 6.211 20 C 0.132 3.868 21 C -0.207 4.207 22 C 0.105 3.895 23 O -0.231 6.231 24 C -0.065 4.065 25 C -0.264 4.264 26 C -0.065 4.065 27 C -0.190 4.190 28 C -0.097 4.097 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.158 0.842 38 H 0.073 0.927 39 H 0.155 0.845 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.105 0.895 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.945 6.007 -8.121 10.287 hybrid contribution 1.163 0.911 0.176 1.488 sum -0.782 6.919 -7.945 10.564 Atomic orbital electron populations 1.22662 0.82704 1.02164 0.98977 1.88097 1.18062 1.27363 1.95108 1.22946 0.95411 0.84800 0.99232 1.21551 0.91453 0.99176 0.89400 1.43607 1.59983 1.07096 1.07231 1.19059 1.02060 0.79275 1.47316 0.87051 1.25557 0.97620 0.95190 0.94547 1.69737 1.29059 1.15106 1.33218 0.87428 0.85232 0.82551 0.78679 1.20105 1.20191 1.17898 1.20080 0.79408 0.86407 0.85365 1.90519 1.57663 1.14555 1.85184 1.21810 1.00797 0.98769 0.93894 0.87700 1.22967 0.94157 0.97938 0.83706 1.86102 1.66525 1.40020 1.28427 1.18429 0.90102 0.90005 0.88233 1.19564 1.07253 1.04322 0.89562 1.18476 0.94828 0.92318 0.83863 1.86038 1.68222 1.51075 1.17752 1.23009 0.94903 0.96887 0.91741 1.20966 1.07905 0.99186 0.98362 1.20623 0.95962 0.98329 0.91576 1.19907 1.03728 0.98088 0.97304 1.20324 1.02688 0.97756 0.88950 0.95044 0.94735 0.90053 0.93803 0.93624 0.90067 0.90165 0.91247 0.84198 0.92726 0.84520 0.88501 0.92754 0.92737 0.85725 0.85719 0.89532 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.81 9.72 -35.23 -0.34 -7.15 16 3 C 0.05 0.94 6.28 37.16 0.23 1.17 16 4 C 0.11 2.13 5.85 -4.04 -0.02 2.10 16 5 N -0.46 -10.55 1.95 -114.81 -0.22 -10.77 16 6 C -0.35 -8.71 7.31 -14.93 -0.11 -8.82 16 7 H 0.11 3.00 7.47 -52.49 -0.39 2.61 16 8 C 0.08 2.05 3.98 -17.47 -0.07 1.98 16 9 N -0.84 -22.39 13.96 55.50 0.77 -21.61 16 10 Si 0.84 20.13 25.07 -169.99 -4.26 15.87 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.25 -6.26 5.72 56.52 0.32 -5.94 16 14 C 0.50 11.61 4.59 -10.99 -0.05 11.56 16 15 O -0.59 -14.49 15.29 5.55 0.08 -14.41 16 16 C -0.13 -2.90 1.39 -91.52 -0.13 -3.03 16 17 H 0.11 2.54 3.23 -51.93 -0.17 2.37 16 18 C 0.09 1.82 6.19 37.37 0.23 2.05 16 19 O -0.30 -6.26 10.27 -19.29 -0.20 -6.46 16 20 C 0.18 3.46 6.47 -39.21 -0.25 3.20 16 21 C -0.19 -3.27 9.87 -39.20 -0.39 -3.66 16 22 C 0.15 2.33 6.68 -39.30 -0.26 2.07 16 23 O -0.32 -4.36 10.50 -19.42 -0.20 -4.56 16 24 C 0.03 0.27 9.81 101.05 0.99 1.26 16 25 C -0.25 -3.48 9.04 -39.46 -0.36 -3.83 16 26 C -0.05 -0.72 9.66 -39.55 -0.38 -1.10 16 27 C -0.19 -3.48 5.75 -104.39 -0.60 -4.08 16 28 C -0.06 -1.18 4.75 -27.80 -0.13 -1.31 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.56 8.04 -51.93 -0.42 1.14 16 35 H 0.08 1.54 7.36 -51.93 -0.38 1.16 16 36 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.14 3.15 6.53 -51.93 -0.34 2.81 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 42 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 43 H 0.12 1.38 6.31 -52.49 -0.33 1.05 16 44 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 45 H 0.09 1.67 7.57 -51.93 -0.39 1.28 16 46 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -29.80 366.70 -5.69 -35.49 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.66 Total: 6.97 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.19 Total: 1.12 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.55 Total: -32.38 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.66 Total: -32.59 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.26 Total: 15.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.80 -5.69 -35.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.896 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds