Wall clock time and date at job start Tue Mar 31 2020 19:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99545 * 2 1 4 4 C 1.53001 * 109.47200 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46592 * 65.00293 * 4 3 2 6 6 C 1.37101 * 119.99997 * 269.99655 * 5 4 3 7 7 H 1.08001 * 119.99766 * 50.36148 * 6 5 4 8 8 C 1.38953 * 119.99982 * 230.35642 * 6 5 4 9 9 N 1.31409 * 119.99638 * 203.00230 * 8 6 5 10 10 Si 1.86799 * 120.00189 * 22.99871 * 8 6 5 11 11 H 1.48495 * 109.47147 * 92.25350 * 10 8 6 12 12 H 1.48493 * 109.46979 * 212.25649 * 10 8 6 13 13 H 1.48504 * 109.47019 * 332.25547 * 10 8 6 14 14 C 1.34774 * 119.99929 * 90.00657 * 5 4 3 15 15 O 1.21290 * 120.00084 * 5.30823 * 14 5 4 16 16 C 1.50695 * 119.99971 * 185.31080 * 14 5 4 17 17 H 1.08997 * 109.69962 * 308.58906 * 16 14 5 18 18 C 1.53408 * 109.69814 * 69.14978 * 16 14 5 19 19 O 1.42904 * 108.33098 * 184.45009 * 18 16 14 20 20 C 1.35858 * 117.88078 * 310.84722 * 19 18 16 21 21 C 1.39057 * 118.43985 * 197.03563 * 20 19 18 22 22 C 1.38449 * 120.17789 * 180.22527 * 21 20 19 23 23 O 1.35897 * 120.08407 * 179.97438 * 22 21 20 24 24 C 1.42904 * 117.00169 * 180.02562 * 23 22 21 25 25 C 1.38801 * 119.83636 * 0.02562 * 22 21 20 26 26 C 1.38001 * 119.92595 * 359.92307 * 25 22 21 27 27 C 1.38424 * 121.80430 * 17.13526 * 20 19 18 28 28 C 1.50784 * 121.39077 * 359.64171 * 27 20 19 29 29 H 1.08997 * 109.47056 * 299.99186 * 1 2 3 30 30 H 1.08997 * 109.47875 * 59.99614 * 1 2 3 31 31 H 1.09000 * 109.46819 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.46847 * 60.00639 * 3 2 1 33 33 H 1.08998 * 109.47460 * 300.00583 * 3 2 1 34 34 H 1.09006 * 109.47061 * 305.00938 * 4 3 2 35 35 H 1.08996 * 109.47573 * 185.00178 * 4 3 2 36 36 H 0.97003 * 120.00336 * 180.02562 * 9 8 6 37 37 H 1.09007 * 109.68353 * 304.21894 * 18 16 14 38 38 H 1.08993 * 109.68689 * 64.78166 * 18 16 14 39 39 H 1.08002 * 119.91111 * 0.23821 * 21 20 19 40 40 H 1.08997 * 109.46748 * 179.97438 * 24 23 22 41 41 H 1.08997 * 109.46869 * 299.99942 * 24 23 22 42 42 H 1.09000 * 109.47256 * 59.99941 * 24 23 22 43 43 H 1.07999 * 120.03595 * 179.90423 * 25 22 21 44 44 H 1.08005 * 119.80589 * 180.02562 * 26 25 22 45 45 H 1.08995 * 109.43849 * 257.66807 * 28 27 20 46 46 H 1.09000 * 109.43819 * 137.79045 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9755 0.5647 -1.2528 6 6 4.0969 -0.7983 -1.3372 7 1 3.2831 -1.4335 -1.0199 8 6 5.2668 -1.3624 -1.8309 9 7 5.2492 -2.5758 -2.3352 10 14 6.8645 -0.3961 -1.7778 11 1 7.5925 -0.7118 -0.5226 12 1 7.7056 -0.7658 -2.9443 13 1 6.5654 1.0578 -1.8241 14 6 4.2613 1.3341 -2.3218 15 8 4.2476 2.5427 -2.2202 16 6 4.5979 0.6929 -3.6433 17 1 5.3821 -0.0508 -3.5017 18 6 3.3475 0.0214 -4.2256 19 8 3.7216 -0.6641 -5.4224 20 6 4.4538 0.0169 -6.3422 21 6 4.5218 -0.4845 -7.6374 22 6 5.2616 0.1780 -8.6022 23 8 5.3272 -0.3140 -9.8673 24 6 6.1095 0.4220 -10.8099 25 6 5.9369 1.3453 -8.2738 26 6 5.8676 1.8424 -6.9883 27 6 5.1266 1.1831 -6.0207 28 6 5.0734 1.7625 -4.6297 29 1 -0.3633 0.5137 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8901 33 1 1.6884 1.8465 -0.8899 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1767 0.0889 36 1 6.0660 -2.9698 -2.6796 37 1 2.9433 -0.6897 -3.5050 38 1 2.5977 0.7782 -4.4556 39 1 3.9961 -1.3930 -7.8916 40 1 6.0778 -0.0784 -11.7777 41 1 5.7065 1.4299 -10.9081 42 1 7.1413 0.4754 -10.4626 43 1 6.5161 1.8639 -9.0235 44 1 6.3936 2.7511 -6.7350 45 1 4.3810 2.6042 -4.6135 46 1 6.0671 2.1055 -4.3414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590892192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:23 Heat of formation + Delta-G solvation = -131.585557 kcal Electronic energy + Delta-G solvation = -30422.909273 eV Core-core repulsion = 26278.456810 eV Total energy + Delta-G solvation = -4144.452463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.10748 -40.93555 -40.01050 -38.61585 -37.50067 -36.62363 -35.20486 -34.03310 -31.72866 -31.38503 -30.52759 -28.20046 -27.28719 -26.57369 -26.40937 -25.29051 -23.74649 -23.37841 -21.78746 -20.58619 -19.56762 -19.37666 -17.91315 -17.65081 -17.60519 -17.26916 -17.02056 -16.66251 -16.38034 -16.33716 -16.11734 -16.00841 -15.81167 -15.45160 -15.12953 -14.87776 -14.57769 -14.41383 -14.25345 -14.15406 -14.00788 -13.29268 -13.23952 -13.02161 -12.96766 -12.89481 -12.74191 -12.61874 -12.39143 -12.12838 -12.11172 -11.96789 -11.68832 -11.51873 -11.49061 -10.94285 -10.64778 -10.43804 -9.53797 -9.48454 -8.99088 -8.51539 -6.20084 0.31220 0.36072 1.13244 1.24450 1.29518 1.72800 1.97375 2.11130 2.53555 2.61815 2.79999 2.87877 3.05876 3.62808 3.69670 3.74571 3.86395 4.00300 4.06982 4.18888 4.21447 4.26535 4.40241 4.42357 4.44506 4.47140 4.47845 4.55972 4.59057 4.61258 4.69695 4.73411 4.77002 4.86733 4.88839 4.96869 4.98479 5.01766 5.17712 5.25291 5.43914 5.52337 5.69672 5.84662 6.35897 6.37401 6.46225 6.55248 6.96227 7.33948 7.75197 8.59478 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.003816 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.434873 B = 7335.120176 C = 7713.051578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.061 3.939 4 C 0.100 3.900 5 N -0.465 5.465 6 C -0.335 4.335 7 H 0.087 0.913 8 C 0.057 3.943 9 N -0.869 5.869 10 Si 0.879 3.121 11 H -0.272 1.272 12 H -0.278 1.278 13 H -0.262 1.262 14 C 0.495 3.505 15 O -0.605 6.605 16 C -0.134 4.134 17 H 0.084 0.916 18 C 0.098 3.902 19 O -0.319 6.319 20 C 0.150 3.850 21 C -0.205 4.205 22 C 0.156 3.844 23 O -0.331 6.331 24 C 0.017 3.983 25 C -0.231 4.231 26 C -0.042 4.042 27 C -0.209 4.209 28 C -0.052 4.052 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.277 0.723 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.134 0.866 40 H 0.121 0.879 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.165 0.835 44 H 0.153 0.847 45 H 0.087 0.913 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 8.065 -9.507 12.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.016 4.016 4 C -0.023 4.023 5 N -0.185 5.185 6 C -0.463 4.463 7 H 0.104 0.896 8 C -0.150 4.150 9 N -0.504 5.504 10 Si 0.704 3.296 11 H -0.198 1.198 12 H -0.203 1.203 13 H -0.186 1.186 14 C 0.285 3.715 15 O -0.491 6.491 16 C -0.155 4.155 17 H 0.101 0.899 18 C 0.023 3.977 19 O -0.232 6.232 20 C 0.105 3.895 21 C -0.224 4.224 22 C 0.110 3.890 23 O -0.245 6.245 24 C -0.077 4.077 25 C -0.249 4.249 26 C -0.060 4.060 27 C -0.210 4.210 28 C -0.089 4.089 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.152 0.848 40 H 0.139 0.861 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.182 0.818 44 H 0.171 0.829 45 H 0.106 0.894 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.203 7.929 -9.591 12.502 hybrid contribution 0.884 0.324 0.490 1.061 sum -0.318 8.253 -9.101 12.290 Atomic orbital electron populations 1.22855 0.80436 1.03231 1.00382 1.88042 1.20653 1.28024 1.95388 1.22843 0.93592 0.84782 1.00423 1.21763 0.93438 0.99172 0.87921 1.43692 1.59934 1.06429 1.08467 1.18734 1.01123 0.79954 1.46479 0.89571 1.25829 0.99218 0.95514 0.94404 1.69800 1.29501 1.16405 1.34735 0.86777 0.83205 0.81150 0.78481 1.19778 1.20343 1.18626 1.20305 0.79041 0.86327 0.85810 1.90495 1.58295 1.14869 1.85480 1.21794 1.00564 0.99040 0.94113 0.89859 1.22705 0.94052 0.97308 0.83659 1.86040 1.67526 1.40940 1.28688 1.18688 0.91244 0.91061 0.88530 1.19674 1.08337 1.04782 0.89640 1.18553 0.93825 0.92256 0.84360 1.86041 1.68966 1.52133 1.17344 1.23419 0.94975 0.97752 0.91574 1.21365 1.06716 0.98237 0.98585 1.20954 0.94887 0.98819 0.91376 1.19922 1.05313 0.98484 0.97304 1.20235 1.02482 0.96916 0.89303 0.92493 0.94343 0.89294 0.90179 0.94657 0.89715 0.89538 0.91219 0.86683 0.91419 0.84846 0.86077 0.91155 0.91533 0.81777 0.82905 0.89434 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.40 -14.77 9.72 -148.98 -1.45 -16.22 16 3 C 0.06 2.07 6.28 71.98 0.45 2.52 16 4 C 0.10 3.91 5.85 86.38 0.51 4.41 16 5 N -0.47 -21.64 1.95 -635.53 -1.24 -22.88 16 6 C -0.34 -17.16 7.31 84.04 0.61 -16.55 16 7 H 0.09 4.85 7.47 -2.91 -0.02 4.83 16 8 C 0.06 2.99 3.98 84.93 0.34 3.33 16 9 N -0.87 -47.92 13.96 21.66 0.30 -47.61 16 10 Si 0.88 42.12 25.07 68.60 1.72 43.84 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 13 H -0.26 -12.75 5.72 99.48 0.57 -12.18 16 14 C 0.50 23.27 4.59 87.66 0.40 23.68 16 15 O -0.61 -29.34 15.29 -3.06 -0.05 -29.39 16 16 C -0.13 -6.01 1.39 -11.38 -0.02 -6.03 16 17 H 0.08 4.12 3.23 -2.39 -0.01 4.12 16 18 C 0.10 4.25 6.19 72.12 0.45 4.69 16 19 O -0.32 -13.95 10.27 -91.95 -0.94 -14.90 16 20 C 0.15 5.89 6.47 22.51 0.15 6.03 16 21 C -0.21 -7.14 9.87 22.52 0.22 -6.92 16 22 C 0.16 4.51 6.68 22.45 0.15 4.66 16 23 O -0.33 -8.25 10.50 -92.39 -0.97 -9.22 16 24 C 0.02 0.23 9.81 113.37 1.11 1.35 16 25 C -0.23 -5.71 9.04 22.35 0.20 -5.51 16 26 C -0.04 -1.20 9.66 22.29 0.22 -0.98 16 27 C -0.21 -7.54 5.75 -19.72 -0.11 -7.65 16 28 C -0.05 -2.03 4.75 29.90 0.14 -1.89 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 3.22 8.04 -2.38 -0.02 3.20 16 35 H 0.09 3.26 7.36 -2.39 -0.02 3.24 16 36 H 0.28 14.63 8.31 -92.71 -0.77 13.85 16 37 H 0.12 5.49 6.53 -2.38 -0.02 5.48 16 38 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 0.79 7.67 -2.39 -0.02 0.77 16 42 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 43 H 0.16 2.74 6.31 -2.91 -0.02 2.72 16 44 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 45 H 0.09 3.33 7.57 -2.39 -0.02 3.32 16 46 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -65.79 366.70 4.30 -61.50 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.86 Total: 27.75 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 6.07 Total: 7.13 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -0.94 Total: -70.49 kcal Atomic # 8 Polarization: -66.32 SS G_CDS: -3.41 Total: -69.72 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.72 Total: 43.84 kcal Total: -65.79 4.30 -61.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.090 kcal (2) G-P(sol) polarization free energy of solvation -65.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds