Wall clock time and date at job start Tue Mar 31 2020 19:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00080 * 2 1 4 4 C 1.52992 * 109.47111 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47500 * 65.00041 * 4 3 2 6 6 C 1.37104 * 119.99929 * 265.00307 * 5 4 3 7 7 H 1.07995 * 119.99842 * 137.46761 * 6 5 4 8 8 C 1.38947 * 119.99409 * 317.46296 * 6 5 4 9 9 N 1.31408 * 120.00780 * 342.91760 * 8 6 5 10 10 Si 1.86804 * 119.99546 * 162.92371 * 8 6 5 11 11 H 1.48494 * 109.47439 * 90.00165 * 10 8 6 12 12 H 1.48505 * 109.47101 * 210.00142 * 10 8 6 13 13 H 1.48502 * 109.47180 * 329.99615 * 10 8 6 14 14 C 1.34776 * 120.00407 * 84.99853 * 5 4 3 15 15 O 1.21298 * 119.99892 * 5.70892 * 14 5 4 16 16 C 1.50697 * 120.00293 * 185.71227 * 14 5 4 17 17 H 1.08999 * 109.69141 * 37.74223 * 16 14 5 18 18 C 1.53402 * 109.69347 * 277.19445 * 16 14 5 19 19 O 1.42828 * 108.37334 * 175.60122 * 18 16 14 20 20 C 1.35849 * 117.85029 * 49.29939 * 19 18 16 21 21 C 1.39049 * 118.45187 * 162.74514 * 20 19 18 22 22 C 1.38459 * 120.17871 * 179.55554 * 21 20 19 23 23 O 1.35895 * 120.08183 * 180.26331 * 22 21 20 24 24 C 1.42896 * 116.99737 * 179.71950 * 23 22 21 25 25 C 1.38796 * 119.83219 * 359.97438 * 22 21 20 26 26 C 1.38003 * 119.93304 * 0.10046 * 25 22 21 27 27 C 1.38431 * 121.79666 * 342.47620 * 20 19 18 28 28 C 1.50794 * 121.37250 * 0.82404 * 27 20 19 29 29 H 1.08999 * 109.47101 * 59.99864 * 1 2 3 30 30 H 1.08997 * 109.46722 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46856 * 300.00197 * 1 2 3 32 32 H 1.08997 * 109.47267 * 59.99823 * 3 2 1 33 33 H 1.09003 * 109.46911 * 300.00025 * 3 2 1 34 34 H 1.08999 * 109.47452 * 304.99850 * 4 3 2 35 35 H 1.09006 * 109.46965 * 184.99507 * 4 3 2 36 36 H 0.96996 * 120.00377 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.68443 * 55.88370 * 18 16 14 38 38 H 1.09001 * 109.68573 * 295.32714 * 18 16 14 39 39 H 1.08003 * 119.91134 * 359.55724 * 21 20 19 40 40 H 1.08995 * 109.47447 * 60.00452 * 24 23 22 41 41 H 1.08997 * 109.47279 * 180.02562 * 24 23 22 42 42 H 1.09007 * 109.47432 * 300.00168 * 24 23 22 43 43 H 1.08004 * 120.03088 * 180.11595 * 25 22 21 44 44 H 1.07999 * 119.80855 * 180.02562 * 26 25 22 45 45 H 1.09000 * 109.43218 * 102.08300 * 28 27 20 46 46 H 1.09006 * 109.42949 * 221.93605 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1956 -0.7877 -1.3076 7 1 3.8546 -1.3561 -2.1603 8 6 4.8574 -1.4267 -0.2663 9 7 5.5603 -0.7253 0.5944 10 14 4.7479 -3.2832 -0.0897 11 1 5.8526 -3.9189 -0.8516 12 1 4.8597 -3.6515 1.3446 13 1 3.4441 -3.7550 -0.6217 14 6 4.1645 1.3230 -2.3506 15 8 4.0709 2.5301 -2.2772 16 6 4.4918 0.6714 -3.6695 17 1 3.9293 -0.2568 -3.7702 18 6 5.9953 0.3751 -3.7407 19 8 6.2577 -0.3326 -4.9532 20 6 5.7485 0.1737 -6.1065 21 6 6.2763 -0.2692 -7.3143 22 6 5.7778 0.2162 -8.5114 23 8 6.2915 -0.2220 -9.6907 24 6 5.7240 0.3178 -10.8859 25 6 4.7481 1.1467 -8.5039 26 6 4.2261 1.5866 -7.3045 27 6 4.7244 1.1051 -6.1046 28 6 4.1335 1.6196 -4.8163 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5682 0.8409 35 1 3.9785 2.1766 0.0888 36 1 6.0219 -1.1714 1.3215 37 1 6.2898 -0.2362 -2.8877 38 1 6.5546 1.3106 -3.7331 39 1 7.0773 -0.9936 -7.3186 40 1 5.8545 1.3999 -10.8937 41 1 6.2232 -0.1149 -11.7528 42 1 4.6608 0.0798 -10.9231 43 1 4.3555 1.5260 -9.4358 44 1 3.4246 2.3104 -7.3010 45 1 4.5326 2.6116 -4.6049 46 1 3.0493 1.6787 -4.9127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590892193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:27 Heat of formation + Delta-G solvation = -124.383871 kcal Electronic energy + Delta-G solvation = -29753.459620 eV Core-core repulsion = 25609.319446 eV Total energy + Delta-G solvation = -4144.140175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.66695 -39.39900 -38.46779 -37.02687 -36.29726 -34.81392 -33.46255 -31.63723 -30.44260 -30.11846 -28.94247 -27.34525 -25.87142 -25.15275 -24.82199 -23.66412 -22.52317 -21.80685 -19.91255 -18.96500 -18.37793 -17.25614 -16.51645 -16.34459 -16.01568 -15.80319 -15.53412 -15.44039 -15.03017 -14.91082 -14.49979 -14.38590 -14.21505 -14.00504 -13.66455 -13.32739 -13.12386 -12.99219 -12.61784 -12.47776 -12.36905 -12.03639 -11.78541 -11.65110 -11.29109 -11.23282 -11.14345 -11.02545 -10.88166 -10.74369 -10.41643 -10.36832 -10.29380 -10.10825 -9.97480 -9.15624 -9.01705 -8.52303 -8.30880 -7.78229 -7.49859 -6.36520 -4.09896 1.49047 1.55165 3.03492 3.17133 3.26788 3.32543 3.70644 3.80606 3.97821 4.13971 4.44333 4.61178 4.81673 4.97575 5.00128 5.00445 5.06558 5.14401 5.28265 5.33291 5.35006 5.48285 5.62062 5.66889 5.68041 5.78575 5.89127 5.94498 6.01044 6.04085 6.06708 6.16382 6.24859 6.29501 6.38145 6.40126 6.50713 6.60604 6.62201 6.70727 6.75223 7.19303 7.38161 7.46710 7.75852 7.78337 7.97720 8.33894 9.08080 9.43224 9.86046 10.67358 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.003371 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.013874 B = 8303.331443 C = 9221.469334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.119 3.881 5 N -0.424 5.424 6 C -0.330 4.330 7 H 0.086 0.914 8 C 0.053 3.947 9 N -0.864 5.864 10 Si 0.912 3.088 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.481 3.519 15 O -0.604 6.604 16 C -0.123 4.123 17 H 0.100 0.900 18 C 0.081 3.919 19 O -0.308 6.308 20 C 0.176 3.824 21 C -0.188 4.188 22 C 0.149 3.851 23 O -0.318 6.318 24 C 0.030 3.970 25 C -0.243 4.243 26 C -0.047 4.047 27 C -0.184 4.184 28 C -0.059 4.059 29 H 0.031 0.969 30 H 0.078 0.922 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.269 0.731 37 H 0.132 0.868 38 H 0.062 0.938 39 H 0.136 0.864 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.088 0.912 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 1.987 -12.610 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.026 4.026 4 C -0.005 4.005 5 N -0.141 5.141 6 C -0.458 4.458 7 H 0.104 0.896 8 C -0.153 4.153 9 N -0.501 5.501 10 Si 0.739 3.261 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.269 3.731 15 O -0.491 6.491 16 C -0.144 4.144 17 H 0.118 0.882 18 C 0.007 3.993 19 O -0.221 6.221 20 C 0.130 3.870 21 C -0.207 4.207 22 C 0.104 3.896 23 O -0.231 6.231 24 C -0.066 4.066 25 C -0.262 4.262 26 C -0.065 4.065 27 C -0.185 4.185 28 C -0.097 4.097 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.154 0.846 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.073 0.927 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.106 0.894 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.907 2.052 -12.346 12.848 hybrid contribution -0.758 -0.442 0.189 0.897 sum -3.665 1.610 -12.157 12.799 Atomic orbital electron populations 1.22648 0.83370 1.01785 0.98834 1.88139 1.17416 1.27671 1.95038 1.23054 0.96539 0.84365 0.98653 1.21380 0.89034 0.99095 0.90973 1.43259 1.56128 1.07287 1.07456 1.19242 1.36578 0.81950 1.08064 0.89638 1.25308 0.93686 0.99794 0.96520 1.69899 1.27631 1.36645 1.15879 0.86170 0.78986 0.83323 0.77638 1.20275 1.20881 1.19259 1.20019 0.80530 0.86428 0.86107 1.90521 1.57681 1.14503 1.86376 1.21607 0.98032 1.00560 0.94211 0.88175 1.22973 0.94288 0.97818 0.84263 1.86033 1.71623 1.50698 1.13775 1.18367 0.90778 0.91759 0.86136 1.19569 1.05709 1.07730 0.87709 1.18481 0.92572 0.93353 0.85181 1.86037 1.59613 1.64936 1.12545 1.23016 0.99110 0.99164 0.85265 1.20994 1.01962 1.04228 0.99017 1.20637 0.97909 0.97350 0.90628 1.19928 0.99741 1.02375 0.96448 1.20322 1.00606 0.99512 0.89219 0.95005 0.90384 0.95136 0.94191 0.94215 0.87460 0.91012 0.92052 0.85062 0.91950 0.84627 0.92711 0.88479 0.92701 0.85712 0.85658 0.89379 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.53 10.42 -35.23 -0.37 -7.89 16 3 C 0.05 1.04 6.25 37.15 0.23 1.27 16 4 C 0.12 2.74 5.32 -4.05 -0.02 2.72 16 5 N -0.42 -10.19 2.45 -114.82 -0.28 -10.47 16 6 C -0.33 -8.09 7.45 -14.93 -0.11 -8.20 16 7 H 0.09 2.08 6.66 -52.49 -0.35 1.73 16 8 C 0.05 1.31 4.97 -17.47 -0.09 1.22 16 9 N -0.86 -22.15 11.64 55.50 0.65 -21.51 16 10 Si 0.91 19.71 29.59 -169.99 -5.03 14.68 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 14 C 0.48 11.12 6.76 -10.99 -0.07 11.05 16 15 O -0.60 -15.02 15.44 5.54 0.09 -14.94 16 16 C -0.12 -2.44 2.03 -91.54 -0.19 -2.63 16 17 H 0.10 2.04 6.74 -51.93 -0.35 1.69 16 18 C 0.08 1.57 6.23 37.37 0.23 1.80 16 19 O -0.31 -5.76 10.27 -19.27 -0.20 -5.96 16 20 C 0.18 3.04 6.47 -39.21 -0.25 2.78 16 21 C -0.19 -2.96 9.87 -39.20 -0.39 -3.35 16 22 C 0.15 2.11 6.68 -39.29 -0.26 1.84 16 23 O -0.32 -4.01 10.50 -19.41 -0.20 -4.21 16 24 C 0.03 0.24 9.81 101.05 0.99 1.23 16 25 C -0.24 -3.10 9.04 -39.46 -0.36 -3.46 16 26 C -0.05 -0.65 9.66 -39.55 -0.38 -1.03 16 27 C -0.18 -3.01 5.75 -104.39 -0.60 -3.61 16 28 C -0.06 -1.04 4.91 -27.81 -0.14 -1.18 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.11 2.65 5.82 -51.93 -0.30 2.35 16 35 H 0.07 1.66 7.50 -51.93 -0.39 1.27 16 36 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16 37 H 0.13 2.73 7.32 -51.93 -0.38 2.35 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.14 2.02 8.06 -52.48 -0.42 1.60 16 40 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.39 7.67 -51.92 -0.40 -0.01 16 43 H 0.13 1.23 6.31 -52.48 -0.33 0.90 16 44 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.09 1.63 7.43 -51.93 -0.39 1.24 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -29.20 376.50 -6.61 -35.81 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.65 Total: 6.77 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -0.29 Total: 2.04 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.36 Total: -31.98 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.68 Total: -32.99 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.20 -6.61 -35.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.579 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds