Wall clock time and date at job start Tue Mar 31 2020 19:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00080 * 2 1 4 4 C 1.52992 * 109.47111 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47500 * 65.00041 * 4 3 2 6 6 C 1.37104 * 119.99929 * 265.00307 * 5 4 3 7 7 H 1.07995 * 119.99842 * 137.46761 * 6 5 4 8 8 C 1.38947 * 119.99409 * 317.46296 * 6 5 4 9 9 N 1.31408 * 120.00780 * 342.91760 * 8 6 5 10 10 Si 1.86804 * 119.99546 * 162.92371 * 8 6 5 11 11 H 1.48494 * 109.47439 * 90.00165 * 10 8 6 12 12 H 1.48505 * 109.47101 * 210.00142 * 10 8 6 13 13 H 1.48502 * 109.47180 * 329.99615 * 10 8 6 14 14 C 1.34776 * 120.00407 * 84.99853 * 5 4 3 15 15 O 1.21298 * 119.99892 * 5.70892 * 14 5 4 16 16 C 1.50697 * 120.00293 * 185.71227 * 14 5 4 17 17 H 1.08999 * 109.69141 * 37.74223 * 16 14 5 18 18 C 1.53402 * 109.69347 * 277.19445 * 16 14 5 19 19 O 1.42828 * 108.37334 * 175.60122 * 18 16 14 20 20 C 1.35849 * 117.85029 * 49.29939 * 19 18 16 21 21 C 1.39049 * 118.45187 * 162.74514 * 20 19 18 22 22 C 1.38459 * 120.17871 * 179.55554 * 21 20 19 23 23 O 1.35895 * 120.08183 * 180.26331 * 22 21 20 24 24 C 1.42896 * 116.99737 * 179.71950 * 23 22 21 25 25 C 1.38796 * 119.83219 * 359.97438 * 22 21 20 26 26 C 1.38003 * 119.93304 * 0.10046 * 25 22 21 27 27 C 1.38431 * 121.79666 * 342.47620 * 20 19 18 28 28 C 1.50794 * 121.37250 * 0.82404 * 27 20 19 29 29 H 1.08999 * 109.47101 * 59.99864 * 1 2 3 30 30 H 1.08997 * 109.46722 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46856 * 300.00197 * 1 2 3 32 32 H 1.08997 * 109.47267 * 59.99823 * 3 2 1 33 33 H 1.09003 * 109.46911 * 300.00025 * 3 2 1 34 34 H 1.08999 * 109.47452 * 304.99850 * 4 3 2 35 35 H 1.09006 * 109.46965 * 184.99507 * 4 3 2 36 36 H 0.96996 * 120.00377 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.68443 * 55.88370 * 18 16 14 38 38 H 1.09001 * 109.68573 * 295.32714 * 18 16 14 39 39 H 1.08003 * 119.91134 * 359.55724 * 21 20 19 40 40 H 1.08995 * 109.47447 * 60.00452 * 24 23 22 41 41 H 1.08997 * 109.47279 * 180.02562 * 24 23 22 42 42 H 1.09007 * 109.47432 * 300.00168 * 24 23 22 43 43 H 1.08004 * 120.03088 * 180.11595 * 25 22 21 44 44 H 1.07999 * 119.80855 * 180.02562 * 26 25 22 45 45 H 1.09000 * 109.43218 * 102.08300 * 28 27 20 46 46 H 1.09006 * 109.42949 * 221.93605 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1956 -0.7877 -1.3076 7 1 3.8546 -1.3561 -2.1603 8 6 4.8574 -1.4267 -0.2663 9 7 5.5603 -0.7253 0.5944 10 14 4.7479 -3.2832 -0.0897 11 1 5.8526 -3.9189 -0.8516 12 1 4.8597 -3.6515 1.3446 13 1 3.4441 -3.7550 -0.6217 14 6 4.1645 1.3230 -2.3506 15 8 4.0709 2.5301 -2.2772 16 6 4.4918 0.6714 -3.6695 17 1 3.9293 -0.2568 -3.7702 18 6 5.9953 0.3751 -3.7407 19 8 6.2577 -0.3326 -4.9532 20 6 5.7485 0.1737 -6.1065 21 6 6.2763 -0.2692 -7.3143 22 6 5.7778 0.2162 -8.5114 23 8 6.2915 -0.2220 -9.6907 24 6 5.7240 0.3178 -10.8859 25 6 4.7481 1.1467 -8.5039 26 6 4.2261 1.5866 -7.3045 27 6 4.7244 1.1051 -6.1046 28 6 4.1335 1.6196 -4.8163 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5682 0.8409 35 1 3.9785 2.1766 0.0888 36 1 6.0219 -1.1714 1.3215 37 1 6.2898 -0.2362 -2.8877 38 1 6.5546 1.3106 -3.7331 39 1 7.0773 -0.9936 -7.3186 40 1 5.8545 1.3999 -10.8937 41 1 6.2232 -0.1149 -11.7528 42 1 4.6608 0.0798 -10.9231 43 1 4.3555 1.5260 -9.4358 44 1 3.4246 2.3104 -7.3010 45 1 4.5326 2.6116 -4.6049 46 1 3.0493 1.6787 -4.9127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590892193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:27 Heat of formation + Delta-G solvation = -141.817585 kcal Electronic energy + Delta-G solvation = -29754.215603 eV Core-core repulsion = 25609.319446 eV Total energy + Delta-G solvation = -4144.896157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.98639 -40.73340 -39.95541 -38.56995 -37.47472 -36.64400 -34.94760 -33.53356 -31.73702 -31.36641 -30.44383 -28.16865 -27.27784 -26.64980 -26.52433 -25.12757 -23.71893 -23.31383 -21.39373 -20.68989 -19.49975 -18.90113 -18.13898 -17.67576 -17.30848 -17.09137 -17.00861 -16.68378 -16.48350 -16.14994 -16.10529 -15.94472 -15.71398 -15.43058 -15.15585 -14.71988 -14.44405 -14.25896 -14.09440 -13.91618 -13.60819 -13.34710 -13.24671 -12.96403 -12.89004 -12.78003 -12.62425 -12.51255 -12.33797 -12.08607 -12.06690 -11.90108 -11.70203 -11.50676 -11.44807 -10.98618 -10.54832 -10.35144 -9.50322 -9.39600 -8.95693 -8.26361 -6.04149 0.35311 0.38656 1.43295 1.49657 1.59879 1.86860 2.01678 2.34538 2.64423 2.73188 2.88948 3.00108 3.16784 3.70444 3.76176 3.82610 3.95866 4.05420 4.11470 4.23095 4.25048 4.31100 4.44199 4.46359 4.49388 4.52764 4.54484 4.58332 4.60995 4.64155 4.71125 4.77221 4.80689 4.86858 4.91272 5.00536 5.10935 5.21186 5.29350 5.32978 5.47995 5.52997 5.56158 6.04947 6.35722 6.40744 6.42150 6.47600 7.16804 7.56458 7.98379 8.77938 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.003371 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.013874 B = 8303.331443 C = 9221.469334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.064 3.936 4 C 0.117 3.883 5 N -0.434 5.434 6 C -0.334 4.334 7 H 0.084 0.916 8 C 0.018 3.982 9 N -0.892 5.892 10 Si 0.969 3.031 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.474 3.526 15 O -0.626 6.626 16 C -0.115 4.115 17 H 0.093 0.907 18 C 0.093 3.907 19 O -0.320 6.320 20 C 0.149 3.851 21 C -0.203 4.203 22 C 0.153 3.847 23 O -0.332 6.332 24 C 0.017 3.983 25 C -0.230 4.230 26 C -0.042 4.042 27 C -0.200 4.200 28 C -0.048 4.048 29 H 0.040 0.960 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.270 0.730 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.134 0.866 40 H 0.068 0.932 41 H 0.120 0.880 42 H 0.068 0.932 43 H 0.162 0.838 44 H 0.153 0.847 45 H 0.076 0.924 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 1.893 -14.993 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.014 4.014 4 C -0.007 4.007 5 N -0.151 5.151 6 C -0.462 4.462 7 H 0.102 0.898 8 C -0.186 4.186 9 N -0.529 5.529 10 Si 0.793 3.207 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.191 1.191 14 C 0.264 3.736 15 O -0.514 6.514 16 C -0.137 4.137 17 H 0.111 0.889 18 C 0.018 3.982 19 O -0.234 6.234 20 C 0.104 3.896 21 C -0.222 4.222 22 C 0.107 3.893 23 O -0.246 6.246 24 C -0.077 4.077 25 C -0.248 4.248 26 C -0.060 4.060 27 C -0.201 4.201 28 C -0.086 4.086 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.152 0.848 40 H 0.087 0.913 41 H 0.138 0.862 42 H 0.086 0.914 43 H 0.180 0.820 44 H 0.170 0.830 45 H 0.095 0.905 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.356 1.956 -14.751 15.504 hybrid contribution -0.326 -0.383 0.766 0.916 sum -4.682 1.573 -13.985 14.831 Atomic orbital electron populations 1.22885 0.80632 1.03309 1.00288 1.88071 1.20456 1.27775 1.95317 1.22832 0.94312 0.84658 0.99597 1.21335 0.91419 0.97845 0.90105 1.43448 1.56262 1.07382 1.07967 1.19340 1.36484 0.82232 1.08155 0.89807 1.25948 0.93279 1.03161 0.96184 1.69986 1.28446 1.38027 1.16436 0.85307 0.78862 0.79055 0.77429 1.19909 1.20760 1.19120 1.20519 0.79874 0.86271 0.86968 1.90490 1.58589 1.15367 1.86917 1.21521 0.98202 1.00514 0.93423 0.88926 1.22664 0.93876 0.97251 0.84440 1.85991 1.72263 1.51081 1.14026 1.18609 0.91985 0.93232 0.85823 1.19673 1.06166 1.08255 0.88128 1.18571 0.92403 0.92966 0.85345 1.86037 1.60101 1.65317 1.13136 1.23404 1.00143 1.00208 0.83927 1.21369 1.00609 1.02740 1.00098 1.20943 0.98056 0.97165 0.89860 1.19898 1.00261 1.03163 0.96773 1.20191 1.01163 0.98168 0.89053 0.94178 0.88914 0.92953 0.91416 0.94865 0.89360 0.92128 0.92000 0.87145 0.92091 0.84785 0.91345 0.86206 0.91387 0.82042 0.82978 0.90527 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.40 -16.17 10.42 -148.98 -1.55 -17.72 16 3 C 0.06 2.54 6.25 71.98 0.45 2.99 16 4 C 0.12 5.52 5.32 86.38 0.46 5.98 16 5 N -0.43 -21.47 2.45 -635.55 -1.56 -23.02 16 6 C -0.33 -16.77 7.45 84.04 0.63 -16.15 16 7 H 0.08 4.17 6.66 -2.91 -0.02 4.15 16 8 C 0.02 0.89 4.97 84.93 0.42 1.31 16 9 N -0.89 -46.91 11.64 21.66 0.25 -46.66 16 10 Si 0.97 40.81 29.59 68.60 2.03 42.84 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 12 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 14 C 0.47 22.62 6.76 87.66 0.59 23.21 16 15 O -0.63 -31.91 15.44 -3.09 -0.05 -31.95 16 16 C -0.12 -4.72 2.03 -11.39 -0.02 -4.75 16 17 H 0.09 3.90 6.74 -2.39 -0.02 3.89 16 18 C 0.09 3.76 6.23 72.12 0.45 4.21 16 19 O -0.32 -12.38 10.27 -91.86 -0.94 -13.32 16 20 C 0.15 5.17 6.47 22.51 0.15 5.31 16 21 C -0.20 -6.30 9.87 22.52 0.22 -6.08 16 22 C 0.15 3.98 6.68 22.46 0.15 4.13 16 23 O -0.33 -7.50 10.50 -92.37 -0.97 -8.47 16 24 C 0.02 0.21 9.81 113.37 1.11 1.32 16 25 C -0.23 -5.05 9.04 22.35 0.20 -4.85 16 26 C -0.04 -1.05 9.66 22.29 0.22 -0.84 16 27 C -0.20 -6.39 5.75 -19.71 -0.11 -6.50 16 28 C -0.05 -1.70 4.91 29.89 0.15 -1.56 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 4.51 5.82 -2.39 -0.01 4.50 16 35 H 0.06 2.92 7.50 -2.38 -0.02 2.91 16 36 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 37 H 0.11 4.87 7.32 -2.39 -0.02 4.86 16 38 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 41 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.67 7.67 -2.38 -0.02 0.65 16 43 H 0.16 2.34 6.31 -2.91 -0.02 2.32 16 44 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 45 H 0.08 2.85 7.43 -2.39 -0.02 2.84 16 46 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 Total: -1.00 -64.29 376.50 4.51 -59.78 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.99 Total: 28.80 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 6.31 Total: 9.73 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -1.30 Total: -69.68 kcal Atomic # 8 Polarization: -67.96 SS G_CDS: -3.51 Total: -71.47 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -64.29 4.51 -59.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.039 kcal (2) G-P(sol) polarization free energy of solvation -64.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds