Wall clock time and date at job start Tue Mar 31 2020 19:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34751 * 117.00291 * 2 1 4 4 O 1.21514 * 119.99939 * 0.02562 * 3 2 1 5 5 C 1.47404 * 120.00189 * 180.02562 * 3 2 1 6 6 C 1.39774 * 120.19438 * 0.02562 * 5 3 2 7 7 C 1.37761 * 119.90018 * 179.97438 * 6 5 3 8 8 C 1.38568 * 120.30811 * 0.02562 * 7 6 5 9 9 C 1.38058 * 120.40084 * 359.68342 * 8 7 6 10 10 C 1.38704 * 120.08715 * 0.59571 * 9 8 7 11 11 O 1.35644 * 120.15301 * 179.69820 * 10 9 8 12 12 C 1.42899 * 116.99930 * 359.73076 * 11 10 9 13 13 C 1.53000 * 109.47405 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.46769 * 64.99669 * 13 12 11 15 15 C 1.47439 * 110.99961 * 69.87863 * 14 13 12 16 16 C 1.54322 * 107.23490 * 123.25626 * 15 14 13 17 17 C 1.55135 * 103.02006 * 22.28319 * 16 15 14 18 18 O 1.42894 * 110.99147 * 82.47593 * 17 16 15 19 19 C 1.50698 * 110.99164 * 206.26016 * 17 16 15 20 20 H 1.07997 * 120.00290 * 118.54614 * 19 17 16 21 21 C 1.37882 * 119.99632 * 298.54420 * 19 17 16 22 22 N 1.31519 * 119.99805 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 120.00086 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46718 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47151 * 119.99642 * 23 21 19 26 26 H 1.48495 * 109.47014 * 239.99768 * 23 21 19 27 27 C 1.47853 * 110.99956 * 190.71917 * 14 13 12 28 28 H 1.09002 * 109.47649 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46916 * 300.00026 * 1 2 3 30 30 H 1.08998 * 109.47661 * 59.99321 * 1 2 3 31 31 H 1.07997 * 120.04927 * 359.95624 * 6 5 3 32 32 H 1.07994 * 119.84908 * 180.02562 * 7 6 5 33 33 H 1.08000 * 119.80163 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.95482 * 180.30282 * 9 8 7 35 35 H 1.09002 * 109.47445 * 59.99908 * 12 11 10 36 36 H 1.09002 * 109.47167 * 299.99826 * 12 11 10 37 37 H 1.09002 * 109.47398 * 184.99964 * 13 12 11 38 38 H 1.09001 * 109.47194 * 305.00145 * 13 12 11 39 39 H 1.09003 * 109.89080 * 242.65955 * 15 14 13 40 40 H 1.09003 * 109.89174 * 3.69037 * 15 14 13 41 41 H 1.09003 * 110.70500 * 140.67082 * 16 15 14 42 42 H 1.09004 * 110.70538 * 263.72555 * 16 15 14 43 43 H 0.96701 * 114.00144 * 61.45428 * 18 17 16 44 44 H 0.97006 * 119.99129 * 179.97438 * 22 21 19 45 45 H 1.09002 * 110.36766 * 332.46788 * 27 14 13 46 46 H 1.08997 * 110.37443 * 94.80755 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.3010 0.1081 -0.0017 7 6 5.6763 0.1872 -0.0027 8 6 6.3057 1.4217 -0.0022 9 6 5.5623 2.5849 -0.0072 10 6 4.1765 2.5246 -0.0003 11 8 3.4448 3.6667 0.0010 12 6 4.1669 4.8998 0.0010 13 6 3.1799 6.0689 0.0019 14 7 2.4174 6.0649 1.2576 15 6 3.2756 6.4348 2.3980 16 6 2.6260 7.6562 3.0819 17 6 1.1432 7.5587 2.6362 18 8 0.4200 6.6429 3.4609 19 6 0.4884 8.9160 2.6386 20 1 0.0984 9.3290 1.7202 21 6 0.3873 9.6304 3.8136 22 7 0.8619 9.1271 4.9321 23 14 -0.4249 11.3126 3.8168 24 1 -0.8725 11.6488 2.4414 25 1 -1.5968 11.2947 4.7287 26 1 0.5493 12.3318 4.2828 27 6 1.2854 7.0139 1.1931 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.8148 -0.8563 -0.0014 32 1 6.2667 -0.7171 -0.0040 33 1 7.3845 1.4742 -0.0034 34 1 6.0603 3.5433 -0.0117 35 1 4.7931 4.9542 -0.8895 36 1 4.7947 4.9532 0.8905 37 1 3.7276 7.0070 -0.0876 38 1 2.4946 5.9665 -0.8395 39 1 3.3357 5.6043 3.1015 40 1 4.2734 6.6927 2.0430 41 1 2.7084 7.5798 4.1661 42 1 3.0779 8.5823 2.7267 43 1 0.3879 6.8948 4.3940 44 1 0.7910 9.6300 5.7586 45 1 1.5099 7.8258 0.5013 46 1 0.3743 6.4977 0.8908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:29 Heat of formation + Delta-G solvation = -130.052562 kcal Electronic energy + Delta-G solvation = -29382.463016 eV Core-core repulsion = 25238.077029 eV Total energy + Delta-G solvation = -4144.385987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72644 -39.56214 -38.41571 -37.35816 -36.16522 -34.72825 -32.09305 -31.84742 -31.14719 -29.83113 -28.24871 -27.78488 -27.39481 -24.54033 -24.11568 -23.18533 -21.75541 -20.92354 -19.72525 -19.48050 -18.49404 -17.49761 -17.03119 -16.75019 -16.32317 -15.88191 -15.66525 -15.24211 -14.98046 -14.85134 -14.66808 -14.38648 -13.92651 -13.62053 -13.41826 -13.27066 -12.97062 -12.69201 -12.34774 -12.25808 -12.22186 -11.93148 -11.75045 -11.47408 -11.34596 -11.26816 -11.19860 -10.84736 -10.76513 -10.68196 -10.56173 -10.37141 -10.23703 -10.18359 -9.81089 -9.29129 -9.13602 -8.56641 -8.35980 -8.01874 -7.49832 -6.18054 -4.26022 0.62970 1.23594 2.64153 2.73766 3.16146 3.22154 3.30880 3.35230 3.65110 4.30821 4.52757 4.59696 4.61730 4.79284 4.94587 5.06608 5.09619 5.12389 5.14947 5.21546 5.22651 5.31774 5.40953 5.51285 5.64116 5.68121 5.76431 5.91735 5.97863 6.00965 6.04898 6.14766 6.20413 6.23437 6.46446 6.48881 6.51648 6.74311 6.93397 7.11971 7.37367 7.45369 7.52980 7.69412 7.82205 7.87438 7.95580 8.21969 8.76690 9.42701 9.59023 10.88788 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017069 B = 0.002800 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.985612 B = 9995.942580 C =10969.421832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.365 6.365 3 C 0.498 3.502 4 O -0.467 6.467 5 C -0.166 4.166 6 C -0.025 4.025 7 C -0.182 4.182 8 C -0.043 4.043 9 C -0.229 4.229 10 C 0.200 3.800 11 O -0.258 6.258 12 C 0.061 3.939 13 C 0.052 3.948 14 N -0.516 5.516 15 C 0.041 3.959 16 C -0.144 4.144 17 C 0.252 3.748 18 O -0.577 6.577 19 C -0.534 4.534 20 H 0.061 0.939 21 C 0.070 3.930 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.284 1.284 27 C 0.061 3.939 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.375 0.625 44 H 0.265 0.735 45 H 0.045 0.955 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.822 -16.948 -10.299 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.283 6.283 3 C 0.341 3.659 4 O -0.352 6.352 5 C -0.168 4.168 6 C -0.043 4.043 7 C -0.201 4.201 8 C -0.062 4.062 9 C -0.247 4.247 10 C 0.151 3.849 11 O -0.168 6.168 12 C -0.015 4.015 13 C -0.077 4.077 14 N -0.240 5.240 15 C -0.086 4.086 16 C -0.183 4.183 17 C 0.211 3.789 18 O -0.384 6.384 19 C -0.573 4.573 20 H 0.079 0.921 21 C -0.132 4.132 22 N -0.534 5.534 23 Si 0.727 3.273 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.210 1.210 27 C -0.066 4.066 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.154 0.846 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.224 0.776 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.107 -17.356 -10.629 22.724 hybrid contribution 0.177 2.245 0.562 2.321 sum 10.285 -15.111 -10.067 20.868 Atomic orbital electron populations 1.23218 0.76159 1.03242 1.02893 1.86483 1.23396 1.33138 1.85299 1.20884 0.88767 0.81711 0.74535 1.91011 1.66019 1.35179 1.42991 1.18440 0.89778 0.91931 1.16661 1.21296 0.93691 0.97114 0.92229 1.20979 0.94282 0.97974 1.06837 1.21183 1.00033 0.91851 0.93086 1.21264 0.92155 1.00307 1.11003 1.19148 0.89945 0.86500 0.89321 1.86498 1.33757 1.11510 1.84993 1.23095 0.95030 0.82611 1.00746 1.22243 0.96190 0.93890 0.95412 1.63599 1.08653 1.50621 1.01127 1.22896 0.93893 0.98493 0.93327 1.23249 0.99170 0.94588 1.01261 1.19523 0.87091 0.86814 0.85432 1.86178 1.77094 1.51756 1.23367 1.21595 1.38927 1.01718 0.95013 0.92092 1.25010 0.94493 0.98243 0.95426 1.69762 1.45894 1.38558 0.99183 0.86430 0.79167 0.83498 0.78240 1.19699 1.20795 1.20983 1.22980 0.92905 0.92334 0.98385 0.88350 0.91655 0.91979 0.84111 0.85262 0.85323 0.84618 0.91975 0.91696 0.92871 0.90071 0.91881 0.94893 0.90494 0.92701 0.77588 0.92503 0.93670 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.57 101.05 1.07 1.47 16 2 O -0.37 -4.73 9.82 -40.63 -0.40 -5.13 16 3 C 0.50 7.86 7.89 34.46 0.27 8.13 16 4 O -0.47 -9.20 14.95 -26.60 -0.40 -9.60 16 5 C -0.17 -2.30 5.88 -104.86 -0.62 -2.92 16 6 C -0.03 -0.26 9.61 -39.18 -0.38 -0.63 16 7 C -0.18 -1.55 10.02 -39.63 -0.40 -1.95 16 8 C -0.04 -0.38 10.03 -39.53 -0.40 -0.77 16 9 C -0.23 -2.49 9.03 -39.48 -0.36 -2.84 16 10 C 0.20 2.85 6.70 -38.68 -0.26 2.59 16 11 O -0.26 -4.33 8.16 -40.52 -0.33 -4.66 16 12 C 0.06 0.84 4.84 37.16 0.18 1.02 16 13 C 0.05 0.84 4.92 -3.82 -0.02 0.82 16 14 N -0.52 -10.67 5.11 -231.24 -1.18 -11.85 16 15 C 0.04 0.84 6.14 -2.84 -0.02 0.83 16 16 C -0.14 -3.38 5.37 -24.91 -0.13 -3.51 16 17 C 0.25 6.48 0.87 -89.64 -0.08 6.40 16 18 O -0.58 -15.88 13.16 -35.23 -0.46 -16.34 16 19 C -0.53 -14.62 8.27 -34.44 -0.28 -14.90 16 20 H 0.06 1.66 7.79 -52.49 -0.41 1.25 16 21 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 22 N -0.89 -24.26 10.75 55.43 0.60 -23.66 16 23 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.06 1.40 5.86 -2.29 -0.01 1.39 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.14 1.17 7.61 -52.49 -0.40 0.77 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.14 1.24 6.30 -52.48 -0.33 0.91 16 35 H 0.06 0.66 7.65 -51.93 -0.40 0.27 16 36 H 0.06 0.87 6.58 -51.93 -0.34 0.52 16 37 H 0.05 0.79 7.96 -51.93 -0.41 0.37 16 38 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.03 0.57 6.94 -51.93 -0.36 0.21 16 41 H 0.08 1.92 7.54 -51.93 -0.39 1.53 16 42 H 0.05 1.30 8.04 -51.93 -0.42 0.88 16 43 H 0.38 10.30 7.56 45.56 0.34 10.64 16 44 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 46 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -32.83 378.94 -9.04 -41.87 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.03 Total: 10.83 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.52 Total: -3.08 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.59 Total: -35.52 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.59 Total: -35.72 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.83 -9.04 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.183 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds