Wall clock time and date at job start Tue Mar 31 2020 19:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34751 * 117.00291 * 2 1 4 4 O 1.21514 * 119.99939 * 0.02562 * 3 2 1 5 5 C 1.47404 * 120.00189 * 180.02562 * 3 2 1 6 6 C 1.39774 * 120.19438 * 0.02562 * 5 3 2 7 7 C 1.37761 * 119.90018 * 179.97438 * 6 5 3 8 8 C 1.38568 * 120.30811 * 0.02562 * 7 6 5 9 9 C 1.38058 * 120.40084 * 359.68342 * 8 7 6 10 10 C 1.38704 * 120.08715 * 0.59571 * 9 8 7 11 11 O 1.35644 * 120.15301 * 179.69820 * 10 9 8 12 12 C 1.42899 * 116.99930 * 359.73076 * 11 10 9 13 13 C 1.53000 * 109.47405 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.46769 * 64.99669 * 13 12 11 15 15 C 1.47439 * 110.99961 * 69.87863 * 14 13 12 16 16 C 1.54322 * 107.23490 * 123.25626 * 15 14 13 17 17 C 1.55135 * 103.02006 * 22.28319 * 16 15 14 18 18 O 1.42894 * 110.99147 * 82.47593 * 17 16 15 19 19 C 1.50698 * 110.99164 * 206.26016 * 17 16 15 20 20 H 1.07997 * 120.00290 * 118.54614 * 19 17 16 21 21 C 1.37882 * 119.99632 * 298.54420 * 19 17 16 22 22 N 1.31519 * 119.99805 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 120.00086 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46718 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47151 * 119.99642 * 23 21 19 26 26 H 1.48495 * 109.47014 * 239.99768 * 23 21 19 27 27 C 1.47853 * 110.99956 * 190.71917 * 14 13 12 28 28 H 1.09002 * 109.47649 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46916 * 300.00026 * 1 2 3 30 30 H 1.08998 * 109.47661 * 59.99321 * 1 2 3 31 31 H 1.07997 * 120.04927 * 359.95624 * 6 5 3 32 32 H 1.07994 * 119.84908 * 180.02562 * 7 6 5 33 33 H 1.08000 * 119.80163 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.95482 * 180.30282 * 9 8 7 35 35 H 1.09002 * 109.47445 * 59.99908 * 12 11 10 36 36 H 1.09002 * 109.47167 * 299.99826 * 12 11 10 37 37 H 1.09002 * 109.47398 * 184.99964 * 13 12 11 38 38 H 1.09001 * 109.47194 * 305.00145 * 13 12 11 39 39 H 1.09003 * 109.89080 * 242.65955 * 15 14 13 40 40 H 1.09003 * 109.89174 * 3.69037 * 15 14 13 41 41 H 1.09003 * 110.70500 * 140.67082 * 16 15 14 42 42 H 1.09004 * 110.70538 * 263.72555 * 16 15 14 43 43 H 0.96701 * 114.00144 * 61.45428 * 18 17 16 44 44 H 0.97006 * 119.99129 * 179.97438 * 22 21 19 45 45 H 1.09002 * 110.36766 * 332.46788 * 27 14 13 46 46 H 1.08997 * 110.37443 * 94.80755 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.3010 0.1081 -0.0017 7 6 5.6763 0.1872 -0.0027 8 6 6.3057 1.4217 -0.0022 9 6 5.5623 2.5849 -0.0072 10 6 4.1765 2.5246 -0.0003 11 8 3.4448 3.6667 0.0010 12 6 4.1669 4.8998 0.0010 13 6 3.1799 6.0689 0.0019 14 7 2.4174 6.0649 1.2576 15 6 3.2756 6.4348 2.3980 16 6 2.6260 7.6562 3.0819 17 6 1.1432 7.5587 2.6362 18 8 0.4200 6.6429 3.4609 19 6 0.4884 8.9160 2.6386 20 1 0.0984 9.3290 1.7202 21 6 0.3873 9.6304 3.8136 22 7 0.8619 9.1271 4.9321 23 14 -0.4249 11.3126 3.8168 24 1 -0.8725 11.6488 2.4414 25 1 -1.5968 11.2947 4.7287 26 1 0.5493 12.3318 4.2828 27 6 1.2854 7.0139 1.1931 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.8148 -0.8563 -0.0014 32 1 6.2667 -0.7171 -0.0040 33 1 7.3845 1.4742 -0.0034 34 1 6.0603 3.5433 -0.0117 35 1 4.7931 4.9542 -0.8895 36 1 4.7947 4.9532 0.8905 37 1 3.7276 7.0070 -0.0876 38 1 2.4946 5.9665 -0.8395 39 1 3.3357 5.6043 3.1015 40 1 4.2734 6.6927 2.0430 41 1 2.7084 7.5798 4.1661 42 1 3.0779 8.5823 2.7267 43 1 0.3879 6.8948 4.3940 44 1 0.7910 9.6300 5.7586 45 1 1.5099 7.8258 0.5013 46 1 0.3743 6.4977 0.8908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:28 Heat of formation + Delta-G solvation = -153.038791 kcal Electronic energy + Delta-G solvation = -29383.459774 eV Core-core repulsion = 25238.077029 eV Total energy + Delta-G solvation = -4145.382745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73568 -40.68423 -40.02366 -38.37970 -37.33283 -36.56439 -34.20700 -32.88977 -32.40538 -30.83872 -30.00240 -29.21134 -28.51392 -26.36926 -25.06967 -24.40442 -22.86591 -21.94301 -21.45097 -21.22060 -19.45393 -19.05173 -18.51662 -17.80146 -17.44713 -17.12763 -16.98963 -16.82319 -16.54211 -15.98719 -15.86358 -15.71227 -15.47103 -14.87654 -14.52853 -14.35721 -14.32529 -14.22068 -13.82933 -13.57382 -13.43124 -13.19815 -13.11063 -13.05471 -12.85158 -12.72673 -12.62673 -12.38488 -12.24675 -12.22561 -11.93319 -11.84094 -11.75701 -11.65281 -11.33403 -11.09526 -10.62118 -10.10193 -10.09184 -9.23216 -9.10290 -8.23167 -6.39523 -0.24207 0.44136 1.37258 1.40505 1.51492 1.60802 1.76066 2.20874 2.36371 2.80846 3.00208 3.10922 3.69091 3.81801 3.86738 3.94448 4.02765 4.05358 4.18239 4.23913 4.29525 4.32107 4.34373 4.36390 4.41659 4.44026 4.46920 4.61119 4.70314 4.72593 4.80766 4.88632 4.91500 5.04578 5.18059 5.23950 5.29798 5.41226 5.45389 5.48673 5.52671 5.77850 5.79925 5.95028 6.20439 6.28983 6.48787 6.66313 6.83198 7.31979 7.43949 8.82392 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017069 B = 0.002800 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.985612 B = 9995.942580 C =10969.421832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.495 3.505 4 O -0.522 6.522 5 C -0.200 4.200 6 C -0.024 4.024 7 C -0.171 4.171 8 C -0.033 4.033 9 C -0.232 4.232 10 C 0.170 3.830 11 O -0.297 6.297 12 C 0.063 3.937 13 C 0.048 3.952 14 N -0.532 5.532 15 C 0.054 3.946 16 C -0.132 4.132 17 C 0.233 3.767 18 O -0.591 6.591 19 C -0.561 4.561 20 H 0.053 0.947 21 C 0.030 3.970 22 N -0.910 5.910 23 Si 0.962 3.038 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.275 1.275 27 C 0.070 3.930 28 H 0.141 0.859 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.168 0.832 34 H 0.153 0.847 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.370 0.630 44 H 0.269 0.731 45 H 0.055 0.945 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.765 -17.990 -11.146 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.276 6.276 3 C 0.341 3.659 4 O -0.412 6.412 5 C -0.201 4.201 6 C -0.042 4.042 7 C -0.189 4.189 8 C -0.050 4.050 9 C -0.250 4.250 10 C 0.122 3.878 11 O -0.209 6.209 12 C -0.012 4.012 13 C -0.080 4.080 14 N -0.257 5.257 15 C -0.074 4.074 16 C -0.172 4.172 17 C 0.193 3.807 18 O -0.398 6.398 19 C -0.599 4.599 20 H 0.071 0.929 21 C -0.171 4.171 22 N -0.550 5.550 23 Si 0.788 3.212 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.200 1.200 27 C -0.058 4.058 28 H 0.159 0.841 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.175 0.825 32 H 0.184 0.816 33 H 0.185 0.815 34 H 0.171 0.829 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.218 0.782 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.075 -18.440 -11.488 25.357 hybrid contribution -0.704 2.427 0.810 2.654 sum 12.371 -16.013 -10.678 22.880 Atomic orbital electron populations 1.23483 0.74965 1.05668 1.01963 1.86482 1.24618 1.31855 1.84675 1.21474 0.89866 0.81534 0.73010 1.90973 1.67320 1.36870 1.46016 1.18689 0.88825 0.93451 1.19180 1.21556 0.94635 0.96496 0.91527 1.21453 0.93551 0.99526 1.04390 1.21689 1.01863 0.90959 0.90516 1.21529 0.90705 1.02172 1.10603 1.19517 0.91381 0.85772 0.91172 1.86438 1.35652 1.12794 1.85982 1.23126 0.94218 0.81108 1.02725 1.22386 0.96497 0.96297 0.92832 1.63481 1.09015 1.49923 1.03280 1.22751 0.95239 0.96436 0.92925 1.23029 0.98079 0.95920 1.00131 1.19821 0.88053 0.86277 0.86555 1.86177 1.77830 1.52563 1.23241 1.21818 1.40085 1.02820 0.95187 0.92856 1.25724 0.94816 1.01566 0.95002 1.69850 1.45955 1.39641 0.99512 0.85448 0.78267 0.79395 0.78111 1.19590 1.20577 1.20023 1.22780 0.93355 0.92723 0.96910 0.84134 0.93176 0.92437 0.82502 0.81578 0.81490 0.82939 0.88375 0.91062 0.90642 0.90749 0.92952 0.91222 0.92560 0.93076 0.78159 0.92206 0.92649 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.57 113.37 1.20 1.89 16 2 O -0.36 -9.47 9.82 -56.61 -0.56 -10.03 16 3 C 0.50 16.39 7.89 70.24 0.55 16.94 16 4 O -0.52 -22.12 14.95 26.79 0.40 -21.72 16 5 C -0.20 -5.53 5.88 -20.02 -0.12 -5.65 16 6 C -0.02 -0.45 9.61 22.53 0.22 -0.23 16 7 C -0.17 -2.20 10.02 22.24 0.22 -1.98 16 8 C -0.03 -0.42 10.03 22.31 0.22 -0.20 16 9 C -0.23 -4.42 9.03 22.34 0.20 -4.22 16 10 C 0.17 4.76 6.70 22.85 0.15 4.92 16 11 O -0.30 -10.13 8.16 -68.66 -0.56 -10.69 16 12 C 0.06 1.67 4.84 71.98 0.35 2.02 16 13 C 0.05 1.53 4.92 86.30 0.42 1.95 16 14 N -0.53 -22.32 5.11 -885.51 -4.52 -26.84 16 15 C 0.05 2.18 6.14 86.65 0.53 2.71 16 16 C -0.13 -6.34 5.37 31.77 0.17 -6.17 16 17 C 0.23 12.37 0.87 -10.16 -0.01 12.36 16 18 O -0.59 -34.01 13.16 -148.98 -1.96 -35.98 16 19 C -0.56 -31.42 8.27 25.60 0.21 -31.21 16 20 H 0.05 2.98 7.79 -2.91 -0.02 2.96 16 21 C 0.03 1.61 5.29 84.66 0.45 2.06 16 22 N -0.91 -50.07 10.75 21.45 0.23 -49.84 16 23 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 C 0.07 3.33 5.86 86.77 0.51 3.83 16 28 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.16 2.26 7.61 -2.91 -0.02 2.24 16 32 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 33 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.15 2.27 6.30 -2.91 -0.02 2.25 16 35 H 0.10 1.84 7.65 -2.39 -0.02 1.82 16 36 H 0.07 1.75 6.58 -2.39 -0.02 1.73 16 37 H 0.08 2.07 7.96 -2.39 -0.02 2.05 16 38 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 39 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.07 2.28 6.94 -2.39 -0.02 2.27 16 41 H 0.06 2.88 7.54 -2.39 -0.02 2.87 16 42 H 0.05 2.43 8.04 -2.38 -0.02 2.41 16 43 H 0.37 21.31 7.56 -74.06 -0.56 20.75 16 44 H 0.27 13.97 8.31 -92.70 -0.77 13.20 16 45 H 0.06 2.46 7.70 -2.39 -0.02 2.44 16 46 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -75.81 378.94 0.79 -75.02 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: 0.44 Total: 35.87 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.29 Total: -0.98 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -4.29 Total: -76.68 kcal Atomic # 8 Polarization: -75.73 SS G_CDS: -2.68 Total: -78.41 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -75.81 0.79 -75.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.015 kcal (2) G-P(sol) polarization free energy of solvation -75.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds