Wall clock time and date at job start Tue Mar 31 2020 19:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34714 * 116.99572 * 2 1 4 4 O 1.21467 * 120.00164 * 359.97438 * 3 2 1 5 5 C 1.47741 * 119.99590 * 179.97438 * 3 2 1 6 6 C 1.39655 * 120.12584 * 0.02562 * 5 3 2 7 7 C 1.37950 * 119.96077 * 179.97438 * 6 5 3 8 8 C 1.38289 * 120.21192 * 359.97438 * 7 6 5 9 9 C 1.38814 * 120.25036 * 0.03795 * 8 7 6 10 10 O 1.35913 * 119.98110 * 179.97438 * 9 8 7 11 11 C 1.42905 * 117.00156 * 0.02562 * 10 9 8 12 12 C 1.53003 * 109.46980 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.47052 * 65.00094 * 12 11 10 14 14 C 1.48562 * 111.00344 * 69.87193 * 13 12 11 15 15 C 1.54379 * 104.69842 * 159.09785 * 14 13 12 16 16 C 1.54257 * 105.06256 * 336.08765 * 15 14 13 17 17 O 1.42901 * 110.32530 * 118.99711 * 16 15 14 18 18 C 1.50699 * 110.32398 * 241.10546 * 16 15 14 19 19 H 1.07999 * 120.00074 * 118.54876 * 18 16 15 20 20 C 1.37874 * 120.00225 * 298.54451 * 18 16 15 21 21 N 1.31516 * 119.99741 * 0.02562 * 20 18 16 22 22 Si 1.86792 * 120.00595 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47238 * 59.99944 * 22 20 18 24 24 H 1.48497 * 109.47775 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47070 * 300.00209 * 22 20 18 26 26 C 1.48856 * 111.13147 * 185.19313 * 13 12 11 27 27 C 1.38474 * 120.03590 * 0.25822 * 9 8 7 28 28 H 1.09001 * 109.46897 * 60.00293 * 1 2 3 29 29 H 1.09000 * 109.46723 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47173 * 300.00058 * 1 2 3 31 31 H 1.08004 * 120.01789 * 359.97438 * 6 5 3 32 32 H 1.08001 * 119.88737 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.87335 * 180.02562 * 8 7 6 34 34 H 1.08994 * 109.46983 * 59.99286 * 11 10 9 35 35 H 1.08998 * 109.46470 * 299.99861 * 11 10 9 36 36 H 1.09001 * 109.46965 * 304.99746 * 12 11 10 37 37 H 1.09003 * 109.46723 * 184.99569 * 12 11 10 38 38 H 1.09002 * 110.41176 * 40.25880 * 14 13 12 39 39 H 1.09002 * 110.41204 * 277.93787 * 14 13 12 40 40 H 1.08998 * 110.32365 * 94.98307 * 15 14 13 41 41 H 1.08997 * 110.32065 * 217.08696 * 15 14 13 42 42 H 0.96704 * 113.99873 * 61.45149 * 17 16 15 43 43 H 0.97003 * 119.99972 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.39541 * 82.21242 * 26 13 12 45 45 H 1.09004 * 110.49212 * 319.84370 * 26 13 12 46 46 H 1.08004 * 120.10634 * 179.70327 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5390 1.2777 0.0006 6 6 4.3021 0.1081 0.0006 7 6 5.6795 0.1843 0.0006 8 6 6.3084 1.4159 0.0000 9 6 5.5584 2.5840 0.0003 10 8 6.1821 3.7916 0.0003 11 6 7.6111 3.7838 -0.0005 12 6 8.1290 5.2235 -0.0011 13 7 7.7447 5.8825 1.2543 14 6 8.5008 5.3214 2.4034 15 6 8.4189 6.4098 3.4952 16 6 8.1694 7.7262 2.7309 17 8 6.9252 8.3042 3.1308 18 6 9.2978 8.6949 2.9745 19 1 9.9010 9.0403 2.1479 20 6 9.5601 9.1404 4.2527 21 7 8.8259 8.7195 5.2593 22 14 10.9583 10.3416 4.5547 23 1 10.7161 11.5873 3.7834 24 1 11.0318 10.6619 6.0029 25 1 12.2393 9.7302 4.1179 26 6 8.1214 7.3225 1.2415 27 6 4.1751 2.5196 0.0065 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8142 -0.8554 0.0006 32 1 6.2686 -0.7210 0.0010 33 1 7.3871 1.4692 -0.0004 34 1 7.9710 3.2681 -0.8908 35 1 7.9720 3.2677 0.8891 36 1 7.6968 5.7647 -0.8427 37 1 9.2153 5.2188 -0.0912 38 1 9.5387 5.1407 2.1237 39 1 8.0355 4.3988 2.7506 40 1 7.5915 6.2035 4.1741 41 1 9.3570 6.4629 4.0477 42 1 6.8829 8.5367 4.0685 43 1 9.0102 9.0331 6.1586 44 1 7.3686 7.9075 0.7131 45 1 9.0995 7.4571 0.7795 46 1 3.5905 3.4277 0.0115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:36 Heat of formation + Delta-G solvation = -155.683629 kcal Electronic energy + Delta-G solvation = -28376.804870 eV Core-core repulsion = 24231.307436 eV Total energy + Delta-G solvation = -4145.497434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75130 -40.91396 -39.99406 -38.38715 -37.53289 -36.62653 -34.17309 -32.87402 -32.44615 -31.08912 -29.82379 -29.03565 -28.63788 -26.35204 -25.32329 -23.76322 -23.43612 -22.14305 -21.38478 -21.18949 -19.71554 -18.99597 -18.36646 -17.51628 -17.46150 -17.25774 -17.03994 -17.02607 -16.66130 -16.51385 -15.71054 -15.52693 -15.10809 -14.96506 -14.68035 -14.61141 -14.48414 -14.24863 -14.10322 -13.50382 -13.39567 -13.23756 -13.05017 -12.98238 -12.87135 -12.81498 -12.50696 -12.34636 -12.33306 -12.16854 -11.88786 -11.86554 -11.78491 -11.70778 -11.57398 -11.03447 -10.59597 -10.16912 -10.10893 -9.30544 -9.24826 -8.20800 -6.37838 -0.43104 0.38827 1.40897 1.42019 1.42801 1.50169 1.52033 2.32683 2.37908 2.72931 3.03803 3.11867 3.60790 3.74350 3.86005 3.98479 4.04168 4.06664 4.15901 4.19431 4.30312 4.32190 4.32582 4.34420 4.41830 4.44060 4.50707 4.60119 4.71224 4.73849 4.82550 4.85285 4.90295 5.13261 5.15322 5.21374 5.21899 5.28946 5.34651 5.45668 5.58914 5.64644 5.72526 5.84841 6.18316 6.27995 6.49514 6.58588 6.69396 7.33919 7.47785 8.84272 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.002146 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.288929 B =13047.333387 C =13718.648540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.510 3.490 4 O -0.539 6.539 5 C -0.105 4.105 6 C -0.096 4.096 7 C -0.082 4.082 8 C -0.170 4.170 9 C 0.110 3.890 10 O -0.321 6.321 11 C 0.068 3.932 12 C 0.039 3.961 13 N -0.517 5.517 14 C 0.042 3.958 15 C -0.111 4.111 16 C 0.232 3.768 17 O -0.599 6.599 18 C -0.560 4.560 19 H 0.056 0.944 20 C 0.026 3.974 21 N -0.912 5.912 22 Si 0.961 3.039 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.268 1.268 26 C 0.059 3.941 27 C -0.116 4.116 28 H 0.062 0.938 29 H 0.141 0.859 30 H 0.060 0.940 31 H 0.163 0.837 32 H 0.174 0.826 33 H 0.159 0.841 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.032 0.968 41 H 0.051 0.949 42 H 0.372 0.628 43 H 0.269 0.731 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.257 -23.467 -11.797 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.357 3.643 4 O -0.430 6.430 5 C -0.107 4.107 6 C -0.114 4.114 7 C -0.099 4.099 8 C -0.189 4.189 9 C 0.065 3.935 10 O -0.235 6.235 11 C -0.007 4.007 12 C -0.090 4.090 13 N -0.242 5.242 14 C -0.086 4.086 15 C -0.150 4.150 16 C 0.193 3.807 17 O -0.407 6.407 18 C -0.598 4.598 19 H 0.075 0.925 20 C -0.174 4.174 21 N -0.552 5.552 22 Si 0.786 3.214 23 H -0.201 1.201 24 H -0.207 1.207 25 H -0.193 1.193 26 C -0.069 4.069 27 C -0.135 4.135 28 H 0.081 0.919 29 H 0.159 0.841 30 H 0.078 0.922 31 H 0.180 0.820 32 H 0.192 0.808 33 H 0.177 0.823 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.221 0.779 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.312 -23.161 -12.207 26.931 hybrid contribution 1.246 1.528 1.073 2.245 sum -5.066 -21.633 -11.133 24.852 Atomic orbital electron populations 1.23637 0.74131 1.06175 1.02576 1.86520 1.25293 1.30987 1.83740 1.21390 0.89447 0.81605 0.71874 1.90843 1.67585 1.37372 1.47232 1.18820 0.88758 0.94608 1.08470 1.21630 0.94347 0.97603 0.97862 1.21392 0.93985 0.98223 0.96326 1.21908 1.01833 0.91710 1.03419 1.18989 0.91618 0.85812 0.97110 1.86237 1.22585 1.26540 1.88109 1.23029 0.77339 0.97390 1.02916 1.22448 0.99293 0.94102 0.93115 1.65464 1.53014 1.02434 1.03283 1.23079 0.96035 0.97693 0.91805 1.22613 0.99702 0.95877 0.96819 1.19564 0.81658 0.89699 0.89828 1.86148 1.39080 1.84171 1.31326 1.21933 1.15907 1.28188 0.93790 0.92549 1.25738 0.98626 0.97365 0.95689 1.69808 1.40686 1.44568 1.00125 0.85572 0.79588 0.79209 0.76985 1.20139 1.20749 1.19332 1.22933 0.98298 0.88856 0.96764 1.20395 0.92545 0.97626 1.02977 0.91894 0.84121 0.92159 0.81960 0.80834 0.82343 0.88247 0.91068 0.89958 0.90452 0.92936 0.90394 0.94902 0.93068 0.77933 0.92208 0.92225 0.92722 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.57 9.81 -56.24 -0.55 -7.12 16 3 C 0.51 12.89 7.90 70.33 0.56 13.45 16 4 O -0.54 -17.34 16.13 19.94 0.32 -17.02 16 5 C -0.11 -2.48 5.87 -20.11 -0.12 -2.60 16 6 C -0.10 -1.54 9.61 22.54 0.22 -1.32 16 7 C -0.08 -1.07 10.02 22.21 0.22 -0.84 16 8 C -0.17 -2.92 9.03 22.42 0.20 -2.72 16 9 C 0.11 2.81 6.68 22.46 0.15 2.96 16 10 O -0.32 -9.41 10.08 -92.57 -0.93 -10.35 16 11 C 0.07 1.51 4.88 71.98 0.35 1.86 16 12 C 0.04 1.05 5.21 86.31 0.45 1.50 16 13 N -0.52 -19.58 5.33 -880.65 -4.69 -24.27 16 14 C 0.04 1.54 5.73 86.45 0.50 2.04 16 15 C -0.11 -5.29 5.55 31.49 0.17 -5.12 16 16 C 0.23 11.94 1.06 -10.65 -0.01 11.93 16 17 O -0.60 -33.81 12.94 -148.98 -1.93 -35.74 16 18 C -0.56 -30.31 8.08 25.60 0.21 -30.10 16 19 H 0.06 2.99 7.58 -2.91 -0.02 2.97 16 20 C 0.03 1.40 5.02 84.65 0.43 1.82 16 21 N -0.91 -49.88 10.81 21.45 0.23 -49.65 16 22 Si 0.96 42.24 29.54 68.60 2.03 44.27 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 C 0.06 2.60 5.77 86.39 0.50 3.09 16 27 C -0.12 -3.26 9.53 22.64 0.22 -3.04 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.16 1.74 7.61 -2.91 -0.02 1.71 16 32 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 33 H 0.16 1.89 6.28 -2.91 -0.02 1.87 16 34 H 0.10 1.46 7.66 -2.39 -0.02 1.45 16 35 H 0.07 1.47 6.56 -2.39 -0.02 1.45 16 36 H 0.08 2.25 8.13 -2.39 -0.02 2.23 16 37 H 0.08 1.79 7.88 -2.39 -0.02 1.78 16 38 H 0.05 1.74 7.82 -2.39 -0.02 1.72 16 39 H 0.08 2.64 7.63 -2.39 -0.02 2.62 16 40 H 0.03 1.65 7.98 -2.39 -0.02 1.63 16 41 H 0.05 2.58 7.24 -2.39 -0.02 2.56 16 42 H 0.37 21.29 7.32 -74.05 -0.54 20.75 16 43 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 44 H 0.06 2.73 8.08 -2.39 -0.02 2.71 16 45 H 0.05 2.25 7.57 -2.39 -0.02 2.23 16 46 H 0.12 3.84 7.65 -2.91 -0.02 3.82 16 Total: -1.00 -71.10 380.26 0.17 -70.93 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.46 Total: 34.48 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 5.23 Total: -5.53 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -4.46 Total: -73.93 kcal Atomic # 8 Polarization: -67.14 SS G_CDS: -3.09 Total: -70.23 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -71.10 0.17 -70.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.754 kcal (2) G-P(sol) polarization free energy of solvation -71.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds