Wall clock time and date at job start Tue Mar 31 2020 19:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99901 * 2 1 4 4 O 1.20825 * 120.00197 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99549 * 179.97438 * 3 2 1 6 6 O 1.42903 * 109.47168 * 179.97438 * 5 3 2 7 7 C 1.35896 * 117.00143 * 179.97438 * 6 5 3 8 8 C 1.38737 * 120.05315 * 180.02562 * 7 6 5 9 9 C 1.38144 * 119.94252 * 179.97438 * 8 7 6 10 10 C 1.38267 * 120.05585 * 359.97438 * 9 8 7 11 11 C 1.50705 * 119.94522 * 179.97438 * 10 9 8 12 12 N 1.46907 * 109.46660 * 90.00166 * 11 10 9 13 13 C 1.48528 * 111.00111 * 307.39624 * 12 11 10 14 14 C 1.55099 * 103.28381 * 200.33449 * 13 12 11 15 15 C 1.54593 * 102.84490 * 37.30637 * 14 13 12 16 16 O 1.42898 * 110.30719 * 97.12142 * 15 14 13 17 17 C 1.50702 * 110.30772 * 219.18689 * 15 14 13 18 18 H 1.08002 * 120.00299 * 117.21456 * 17 15 14 19 19 C 1.37884 * 119.99942 * 296.93014 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.47903 * 110.99661 * 189.99940 * 12 11 10 26 26 C 1.38266 * 120.11190 * 0.27671 * 10 9 8 27 27 C 1.38141 * 120.05426 * 359.44688 * 26 10 9 28 28 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47089 * 300.00555 * 1 2 3 30 30 H 1.09010 * 109.46746 * 59.99936 * 1 2 3 31 31 H 1.09001 * 109.47346 * 59.99711 * 5 3 2 32 32 H 1.09003 * 109.47460 * 299.99325 * 5 3 2 33 33 H 1.07998 * 120.02835 * 359.97438 * 8 7 6 34 34 H 1.07998 * 119.97322 * 179.97438 * 9 8 7 35 35 H 1.08995 * 109.47188 * 330.00480 * 11 10 9 36 36 H 1.08996 * 109.47303 * 210.00157 * 11 10 9 37 37 H 1.09001 * 110.66718 * 318.71611 * 13 12 11 38 38 H 1.09006 * 110.66736 * 81.67838 * 13 12 11 39 39 H 1.09001 * 110.71257 * 278.99719 * 14 13 12 40 40 H 1.08998 * 110.81298 * 155.66416 * 14 13 12 41 41 H 0.96691 * 114.00808 * 62.79185 * 16 15 14 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.91924 * 26.49349 * 25 12 11 44 44 H 1.08997 * 110.08057 * 265.28894 * 25 12 11 45 45 H 1.08002 * 119.97194 * 179.70554 * 26 10 9 46 46 H 1.07998 * 120.02939 * 180.27615 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 8 3.9716 2.6451 -0.0001 7 6 5.3077 2.8934 0.0008 8 6 5.7714 4.2010 0.0007 9 6 7.1301 4.4507 0.0022 10 6 8.0275 3.3989 0.0043 11 6 9.5092 3.6742 0.0054 12 7 9.9893 3.7653 1.3908 13 6 9.1811 4.7366 2.1714 14 6 10.1065 5.0932 3.3639 15 6 11.5093 5.1187 2.7147 16 8 11.8776 6.4587 2.3823 17 6 12.5276 4.5129 3.6459 18 1 13.0588 3.6181 3.3569 19 6 12.7855 5.1045 4.8644 20 7 12.1387 6.1942 5.2163 21 14 14.0533 4.3580 6.0153 22 1 14.6360 3.1439 5.3895 23 1 15.1307 5.3470 6.2734 24 1 13.4017 3.9900 7.2980 25 6 11.3796 4.2676 1.4380 26 6 7.5679 2.0949 -0.0008 27 6 6.2102 1.8398 0.0034 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 3.9564 0.7804 -0.8891 32 1 3.9557 0.7809 0.8909 33 1 5.0708 5.0229 -0.0005 34 1 7.4916 5.4684 0.0017 35 1 9.7043 4.6150 -0.5093 36 1 10.0295 2.8650 -0.5070 37 1 8.9645 5.6234 1.5757 38 1 8.2578 4.2751 2.5218 39 1 10.0528 4.3260 4.1364 40 1 9.8526 6.0714 3.7722 41 1 11.9534 7.0469 3.1460 42 1 12.3199 6.6102 6.0737 43 1 11.5827 4.8813 0.5604 44 1 12.0783 3.4319 1.4762 45 1 8.2709 1.2750 -0.0040 46 1 5.8517 0.8211 0.0039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592523146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:56 Heat of formation + Delta-G solvation = -130.425920 kcal Electronic energy + Delta-G solvation = -28266.257048 eV Core-core repulsion = 24121.854871 eV Total energy + Delta-G solvation = -4144.402177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07982 -40.17940 -38.71541 -37.49361 -36.77174 -34.76199 -32.06316 -31.72163 -31.07351 -30.13494 -28.79179 -27.88662 -27.38621 -25.20060 -23.81925 -23.10654 -21.84440 -21.03854 -20.06011 -19.35968 -18.77182 -17.69567 -17.36173 -17.29463 -17.06504 -15.86290 -15.71851 -15.69242 -15.10247 -14.84447 -14.37305 -14.30676 -13.97591 -13.92066 -13.74992 -13.48951 -13.25990 -13.08480 -12.73205 -12.50308 -12.37671 -12.08102 -11.72766 -11.52788 -11.31415 -11.30933 -11.20018 -11.06706 -10.87611 -10.80796 -10.73939 -10.52993 -10.41125 -10.25867 -9.90084 -9.14239 -9.00887 -8.57065 -8.28132 -8.03406 -7.72033 -6.17297 -4.23159 1.30784 1.37822 1.67291 1.70097 3.21970 3.24294 3.32833 3.37454 3.69567 4.16706 4.34428 4.47971 4.52064 4.63213 4.72272 4.72896 4.78946 4.80573 4.97651 5.04754 5.11793 5.28600 5.38039 5.50868 5.68530 5.77846 5.80198 5.84103 6.01367 6.11312 6.16885 6.19503 6.26557 6.31786 6.44448 6.54241 6.65066 6.70722 6.95954 7.09351 7.14609 7.25268 7.32319 7.55791 7.67966 7.72962 7.87203 8.19329 8.78672 9.43451 9.53429 10.90346 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021621 B = 0.002021 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.712451 B =13847.904301 C =14259.496218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.463 3.537 4 O -0.483 6.483 5 C 0.070 3.930 6 O -0.298 6.298 7 C 0.118 3.882 8 C -0.144 4.144 9 C -0.071 4.071 10 C -0.100 4.100 11 C 0.085 3.915 12 N -0.508 5.508 13 C 0.035 3.965 14 C -0.118 4.118 15 C 0.242 3.758 16 O -0.595 6.595 17 C -0.526 4.526 18 H 0.062 0.938 19 C 0.067 3.933 20 N -0.899 5.899 21 Si 0.900 3.100 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.054 3.946 26 C -0.060 4.060 27 C -0.209 4.209 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.383 0.617 42 H 0.265 0.735 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.129 0.871 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.506 -11.193 -11.473 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.304 3.696 4 O -0.368 6.368 5 C -0.007 4.007 6 O -0.212 6.212 7 C 0.073 3.927 8 C -0.162 4.162 9 C -0.090 4.090 10 C -0.101 4.101 11 C -0.043 4.043 12 N -0.232 5.232 13 C -0.093 4.093 14 C -0.156 4.156 15 C 0.202 3.798 16 O -0.405 6.405 17 C -0.565 4.565 18 H 0.080 0.920 19 C -0.135 4.135 20 N -0.540 5.540 21 Si 0.727 3.273 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.074 4.074 26 C -0.078 4.078 27 C -0.228 4.228 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.233 0.767 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.147 0.853 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.944 -11.399 -11.727 25.027 hybrid contribution 0.514 0.492 1.002 1.228 sum -18.430 -10.907 -10.726 23.952 Atomic orbital electron populations 1.23348 0.75241 1.04084 1.02948 1.86446 1.24130 1.32393 1.84399 1.23040 0.91081 0.81927 0.73544 1.90733 1.66672 1.36180 1.43193 1.21821 0.88683 0.84565 1.05599 1.86052 1.21440 1.24142 1.89544 1.18898 0.80781 0.94440 0.98553 1.20356 0.95706 0.93984 1.06170 1.20973 0.91616 0.99356 0.97007 1.19818 0.95626 0.93098 1.01540 1.21221 0.90512 1.00724 0.91869 1.64951 1.03161 1.46182 1.08946 1.23322 0.97039 0.92853 0.96085 1.23000 0.96028 1.01020 0.95585 1.19370 0.91118 0.80236 0.89050 1.86083 1.92466 1.22861 1.39060 1.21736 1.22263 1.11187 1.01275 0.91959 1.25021 0.95890 0.94835 0.97711 1.69668 1.41743 1.19819 1.22727 0.86416 0.81145 0.79251 0.80442 1.19672 1.20968 1.20950 1.22883 0.88588 0.97631 0.98259 1.20828 0.94308 0.96581 0.96128 1.21176 0.94101 0.97925 1.09591 0.87595 0.91548 0.91593 0.87552 0.87426 0.85169 0.85291 0.94147 0.90341 0.94929 0.91790 0.91484 0.91737 0.76657 0.92465 0.94567 0.90278 0.85343 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.76 10.57 -39.26 -0.41 -3.18 16 3 C 0.46 4.49 8.03 36.00 0.29 4.78 16 4 O -0.48 -6.43 16.25 -25.48 -0.41 -6.84 16 5 C 0.07 0.57 5.33 36.00 0.19 0.76 16 6 O -0.30 -3.56 9.67 -39.36 -0.38 -3.94 16 7 C 0.12 1.43 6.69 -39.21 -0.26 1.17 16 8 C -0.14 -1.82 9.99 -39.43 -0.39 -2.22 16 9 C -0.07 -0.94 8.33 -39.61 -0.33 -1.27 16 10 C -0.10 -1.38 4.59 -104.60 -0.48 -1.86 16 11 C 0.08 1.30 5.19 -4.97 -0.03 1.27 16 12 N -0.51 -9.65 5.39 -231.78 -1.25 -10.90 16 13 C 0.03 0.68 4.98 -1.81 -0.01 0.67 16 14 C -0.12 -2.75 5.43 -24.78 -0.13 -2.88 16 15 C 0.24 6.02 0.99 -90.42 -0.09 5.93 16 16 O -0.60 -15.51 12.92 -35.23 -0.46 -15.96 16 17 C -0.53 -14.17 8.11 -34.44 -0.28 -14.45 16 18 H 0.06 1.68 7.34 -52.49 -0.39 1.29 16 19 C 0.07 1.78 5.26 -17.82 -0.09 1.69 16 20 N -0.90 -24.15 10.88 55.43 0.60 -23.55 16 21 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.05 1.16 6.17 -2.76 -0.02 1.14 16 26 C -0.06 -0.73 9.69 -39.61 -0.38 -1.11 16 27 C -0.21 -2.27 9.04 -39.43 -0.36 -2.62 16 28 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.07 0.34 8.13 -51.92 -0.42 -0.08 16 31 H 0.11 0.59 7.67 -51.93 -0.40 0.19 16 32 H 0.11 0.66 7.66 -51.93 -0.40 0.26 16 33 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.13 1.64 7.38 -52.49 -0.39 1.26 16 35 H 0.04 0.62 7.75 -51.93 -0.40 0.22 16 36 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 37 H 0.03 0.62 7.09 -51.93 -0.37 0.25 16 38 H 0.06 1.20 7.72 -51.93 -0.40 0.80 16 39 H 0.07 1.67 7.86 -51.93 -0.41 1.27 16 40 H 0.06 1.57 8.02 -51.93 -0.42 1.15 16 41 H 0.38 10.14 7.17 45.56 0.33 10.47 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.04 0.77 7.39 -51.93 -0.38 0.39 16 44 H 0.08 1.71 7.39 -51.93 -0.38 1.33 16 45 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 46 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -31.39 378.54 -8.94 -40.33 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.00 Total: 10.27 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.31 Total: -7.75 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: -0.65 Total: -34.45 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -1.66 Total: -29.92 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.39 -8.94 -40.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.098 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds