Wall clock time and date at job start Tue Mar 31 2020 19:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99901 * 2 1 4 4 O 1.20825 * 120.00197 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99549 * 179.97438 * 3 2 1 6 6 O 1.42903 * 109.47168 * 179.97438 * 5 3 2 7 7 C 1.35896 * 117.00143 * 179.97438 * 6 5 3 8 8 C 1.38737 * 120.05315 * 180.02562 * 7 6 5 9 9 C 1.38144 * 119.94252 * 179.97438 * 8 7 6 10 10 C 1.38267 * 120.05585 * 359.97438 * 9 8 7 11 11 C 1.50705 * 119.94522 * 179.97438 * 10 9 8 12 12 N 1.46907 * 109.46660 * 90.00166 * 11 10 9 13 13 C 1.48528 * 111.00111 * 307.39624 * 12 11 10 14 14 C 1.55099 * 103.28381 * 200.33449 * 13 12 11 15 15 C 1.54593 * 102.84490 * 37.30637 * 14 13 12 16 16 O 1.42898 * 110.30719 * 97.12142 * 15 14 13 17 17 C 1.50702 * 110.30772 * 219.18689 * 15 14 13 18 18 H 1.08002 * 120.00299 * 117.21456 * 17 15 14 19 19 C 1.37884 * 119.99942 * 296.93014 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.47903 * 110.99661 * 189.99940 * 12 11 10 26 26 C 1.38266 * 120.11190 * 0.27671 * 10 9 8 27 27 C 1.38141 * 120.05426 * 359.44688 * 26 10 9 28 28 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47089 * 300.00555 * 1 2 3 30 30 H 1.09010 * 109.46746 * 59.99936 * 1 2 3 31 31 H 1.09001 * 109.47346 * 59.99711 * 5 3 2 32 32 H 1.09003 * 109.47460 * 299.99325 * 5 3 2 33 33 H 1.07998 * 120.02835 * 359.97438 * 8 7 6 34 34 H 1.07998 * 119.97322 * 179.97438 * 9 8 7 35 35 H 1.08995 * 109.47188 * 330.00480 * 11 10 9 36 36 H 1.08996 * 109.47303 * 210.00157 * 11 10 9 37 37 H 1.09001 * 110.66718 * 318.71611 * 13 12 11 38 38 H 1.09006 * 110.66736 * 81.67838 * 13 12 11 39 39 H 1.09001 * 110.71257 * 278.99719 * 14 13 12 40 40 H 1.08998 * 110.81298 * 155.66416 * 14 13 12 41 41 H 0.96691 * 114.00808 * 62.79185 * 16 15 14 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.91924 * 26.49349 * 25 12 11 44 44 H 1.08997 * 110.08057 * 265.28894 * 25 12 11 45 45 H 1.08002 * 119.97194 * 179.70554 * 26 10 9 46 46 H 1.07998 * 120.02939 * 180.27615 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 8 3.9716 2.6451 -0.0001 7 6 5.3077 2.8934 0.0008 8 6 5.7714 4.2010 0.0007 9 6 7.1301 4.4507 0.0022 10 6 8.0275 3.3989 0.0043 11 6 9.5092 3.6742 0.0054 12 7 9.9893 3.7653 1.3908 13 6 9.1811 4.7366 2.1714 14 6 10.1065 5.0932 3.3639 15 6 11.5093 5.1187 2.7147 16 8 11.8776 6.4587 2.3823 17 6 12.5276 4.5129 3.6459 18 1 13.0588 3.6181 3.3569 19 6 12.7855 5.1045 4.8644 20 7 12.1387 6.1942 5.2163 21 14 14.0533 4.3580 6.0153 22 1 14.6360 3.1439 5.3895 23 1 15.1307 5.3470 6.2734 24 1 13.4017 3.9900 7.2980 25 6 11.3796 4.2676 1.4380 26 6 7.5679 2.0949 -0.0008 27 6 6.2102 1.8398 0.0034 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 3.9564 0.7804 -0.8891 32 1 3.9557 0.7809 0.8909 33 1 5.0708 5.0229 -0.0005 34 1 7.4916 5.4684 0.0017 35 1 9.7043 4.6150 -0.5093 36 1 10.0295 2.8650 -0.5070 37 1 8.9645 5.6234 1.5757 38 1 8.2578 4.2751 2.5218 39 1 10.0528 4.3260 4.1364 40 1 9.8526 6.0714 3.7722 41 1 11.9534 7.0469 3.1460 42 1 12.3199 6.6102 6.0737 43 1 11.5827 4.8813 0.5604 44 1 12.0783 3.4319 1.4762 45 1 8.2709 1.2750 -0.0040 46 1 5.8517 0.8211 0.0039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592523146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:55 Heat of formation + Delta-G solvation = -151.576769 kcal Electronic energy + Delta-G solvation = -28267.174218 eV Core-core repulsion = 24121.854871 eV Total energy + Delta-G solvation = -4145.319347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.82437 -41.07256 -40.13430 -38.63485 -37.55396 -36.45726 -34.12379 -32.94481 -32.04353 -31.03171 -30.09285 -29.61204 -27.98229 -26.77063 -25.38238 -24.00118 -22.85356 -21.95549 -21.46432 -21.22787 -19.54493 -19.08881 -18.46321 -18.02940 -18.01152 -17.08951 -16.89847 -16.63043 -16.54095 -16.39901 -15.79204 -15.70551 -15.28608 -14.87421 -14.67419 -14.49529 -14.40269 -14.22731 -13.92816 -13.79514 -13.47100 -13.25608 -13.22297 -13.02147 -12.96404 -12.65329 -12.43995 -12.30613 -12.19424 -12.01411 -11.99758 -11.90142 -11.85985 -11.77066 -11.54798 -11.05696 -10.59758 -10.09379 -9.91286 -9.39608 -9.03325 -8.19535 -6.32928 0.38109 0.44003 0.96360 1.06910 1.40426 1.43585 1.54479 2.40720 2.51341 2.70740 3.04613 3.33475 3.54809 3.80535 3.87478 3.93131 3.98294 4.01195 4.06374 4.25320 4.27239 4.30479 4.33757 4.38028 4.44921 4.46760 4.60191 4.67151 4.69924 4.76869 4.81604 4.85687 5.10143 5.14958 5.18690 5.25995 5.27507 5.36173 5.44808 5.62203 5.72674 5.74746 5.79406 6.00564 6.17496 6.24829 6.31607 6.56294 6.72040 7.36733 7.45180 8.86535 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021621 B = 0.002021 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.712451 B =13847.904301 C =14259.496218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.466 3.534 4 O -0.529 6.529 5 C 0.063 3.937 6 O -0.320 6.320 7 C 0.118 3.882 8 C -0.158 4.158 9 C -0.078 4.078 10 C -0.118 4.118 11 C 0.087 3.913 12 N -0.509 5.509 13 C 0.051 3.949 14 C -0.111 4.111 15 C 0.225 3.775 16 O -0.602 6.602 17 C -0.550 4.550 18 H 0.056 0.944 19 C 0.025 3.975 20 N -0.916 5.916 21 Si 0.960 3.040 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.062 3.938 26 C -0.062 4.062 27 C -0.201 4.201 28 H 0.139 0.861 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.038 0.962 36 H 0.096 0.904 37 H 0.037 0.963 38 H 0.075 0.925 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.376 0.624 42 H 0.268 0.732 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.144 0.856 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.122 -13.639 -12.023 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.309 3.691 4 O -0.418 6.418 5 C -0.013 4.013 6 O -0.235 6.235 7 C 0.073 3.927 8 C -0.177 4.177 9 C -0.097 4.097 10 C -0.119 4.119 11 C -0.040 4.040 12 N -0.233 5.233 13 C -0.076 4.076 14 C -0.150 4.150 15 C 0.185 3.815 16 O -0.411 6.411 17 C -0.589 4.589 18 H 0.074 0.926 19 C -0.175 4.175 20 N -0.556 5.556 21 Si 0.786 3.214 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.066 4.066 26 C -0.080 4.080 27 C -0.219 4.219 28 H 0.157 0.843 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.226 0.774 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.094 0.906 45 H 0.162 0.838 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.571 -13.875 -12.295 26.957 hybrid contribution 0.588 1.193 1.147 1.756 sum -18.983 -12.682 -11.148 25.406 Atomic orbital electron populations 1.23639 0.73925 1.06162 1.02683 1.86451 1.25442 1.31250 1.83742 1.23438 0.91773 0.81735 0.72140 1.90720 1.67750 1.37676 1.45614 1.22199 0.87627 0.83134 1.08299 1.86018 1.21258 1.26709 1.89467 1.18993 0.81233 0.94541 0.97914 1.20469 0.95591 0.94888 1.06756 1.20969 0.91936 0.99292 0.97489 1.19739 0.94468 0.94127 1.03560 1.21264 0.91971 1.01305 0.89480 1.64920 1.01640 1.45270 1.11501 1.23127 0.96504 0.93386 0.94601 1.22788 0.96560 0.99287 0.96361 1.19648 0.91307 0.79841 0.90664 1.86078 1.92659 1.23498 1.38832 1.21996 1.23178 1.11396 1.02286 0.92623 1.25721 0.97540 0.95267 0.98982 1.69753 1.42418 1.20409 1.23038 0.85479 0.78917 0.78522 0.78503 1.19402 1.20599 1.20553 1.22707 0.90358 0.96905 0.96597 1.21059 0.95324 0.96224 0.95393 1.21492 0.93207 0.99315 1.07865 0.84328 0.91998 0.91796 0.84345 0.84840 0.85030 0.85622 0.94412 0.88603 0.94453 0.90651 0.93657 0.93505 0.77362 0.92286 0.94499 0.90551 0.83792 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.35 -4.72 10.57 -51.42 -0.54 -5.27 16 3 C 0.47 8.30 8.03 71.23 0.57 8.88 16 4 O -0.53 -13.95 16.25 28.40 0.46 -13.49 16 5 C 0.06 0.83 5.33 71.23 0.38 1.21 16 6 O -0.32 -7.05 9.67 -73.30 -0.71 -7.76 16 7 C 0.12 2.61 6.69 22.51 0.15 2.76 16 8 C -0.16 -3.88 9.99 22.37 0.22 -3.65 16 9 C -0.08 -2.00 8.33 22.25 0.19 -1.82 16 10 C -0.12 -3.05 4.59 -19.85 -0.09 -3.14 16 11 C 0.09 2.53 5.19 85.56 0.44 2.97 16 12 N -0.51 -18.83 5.39 -887.23 -4.78 -23.61 16 13 C 0.05 1.99 4.98 86.71 0.43 2.42 16 14 C -0.11 -5.29 5.43 31.86 0.17 -5.11 16 15 C 0.23 11.34 0.99 -10.66 -0.01 11.33 16 16 O -0.60 -31.97 12.92 -148.98 -1.93 -33.89 16 17 C -0.55 -29.97 8.11 25.60 0.21 -29.76 16 18 H 0.06 3.02 7.34 -2.91 -0.02 3.00 16 19 C 0.02 1.32 5.26 84.66 0.45 1.76 16 20 N -0.92 -49.79 10.88 21.45 0.23 -49.56 16 21 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 25 C 0.06 2.67 6.17 86.44 0.53 3.20 16 26 C -0.06 -1.31 9.69 22.25 0.22 -1.10 16 27 C -0.20 -3.64 9.04 22.36 0.20 -3.44 16 28 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 30 H 0.06 0.61 8.13 -2.38 -0.02 0.59 16 31 H 0.14 0.96 7.67 -2.39 -0.02 0.94 16 32 H 0.13 1.10 7.66 -2.39 -0.02 1.08 16 33 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 34 H 0.13 3.18 7.38 -2.91 -0.02 3.16 16 35 H 0.04 1.12 7.75 -2.39 -0.02 1.11 16 36 H 0.10 2.44 8.08 -2.39 -0.02 2.42 16 37 H 0.04 1.41 7.09 -2.39 -0.02 1.39 16 38 H 0.08 2.76 7.72 -2.38 -0.02 2.74 16 39 H 0.04 2.30 7.86 -2.39 -0.02 2.29 16 40 H 0.05 2.34 8.02 -2.39 -0.02 2.32 16 41 H 0.38 20.53 7.17 -74.06 -0.53 20.00 16 42 H 0.27 13.84 8.31 -92.70 -0.77 13.07 16 43 H 0.04 1.56 7.39 -2.39 -0.02 1.54 16 44 H 0.08 3.29 7.39 -2.39 -0.02 3.28 16 45 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 46 H 0.16 1.68 6.30 -2.91 -0.02 1.66 16 Total: -1.00 -68.43 378.54 0.49 -67.94 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.47 Total: 32.88 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 5.26 Total: -12.04 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -4.55 Total: -73.18 kcal Atomic # 8 Polarization: -57.69 SS G_CDS: -2.72 Total: -60.41 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -68.43 0.49 -67.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.639 kcal (2) G-P(sol) polarization free energy of solvation -68.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds