Wall clock time and date at job start Tue Mar 31 2020 18:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35986 * 116.99848 * 2 1 4 4 C 1.38709 * 120.00321 * 359.73066 * 3 2 1 5 5 C 1.38114 * 120.00156 * 180.29483 * 4 3 2 6 6 C 1.38715 * 119.99887 * 359.94907 * 5 4 3 7 7 O 1.35982 * 119.99903 * 180.02562 * 6 5 4 8 8 C 1.42904 * 117.00229 * 0.02562 * 7 6 5 9 9 C 1.38678 * 120.00234 * 0.05082 * 6 5 4 10 10 C 1.50696 * 120.00286 * 179.97438 * 9 6 5 11 11 C 1.50707 * 109.47105 * 85.01800 * 10 9 6 12 12 O 1.21280 * 119.99847 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00067 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.64722 * 0.02883 * 13 11 10 15 15 C 1.54905 * 104.83346 * 204.08956 * 14 13 11 16 16 C 1.55154 * 101.58325 * 322.99145 * 15 14 13 17 17 O 1.42902 * 110.71988 * 277.13806 * 16 15 14 18 18 C 1.50703 * 110.72364 * 153.86270 * 16 15 14 19 19 H 1.07998 * 119.99888 * 241.45201 * 18 16 15 20 20 C 1.37874 * 119.99961 * 61.45564 * 18 16 15 21 21 N 1.31516 * 120.00004 * 359.97438 * 20 18 16 22 22 Si 1.86796 * 119.99917 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47083 * 89.99906 * 22 20 18 24 24 H 1.48500 * 109.47242 * 209.99891 * 22 20 18 25 25 H 1.48500 * 109.47268 * 329.99791 * 22 20 18 26 26 C 1.47022 * 125.65045 * 179.71521 * 13 11 10 27 27 C 1.38149 * 119.99760 * 359.97332 * 9 6 5 28 28 H 1.08993 * 109.47448 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47068 * 300.00029 * 1 2 3 30 30 H 1.09005 * 109.47117 * 59.99257 * 1 2 3 31 31 H 1.08001 * 120.00155 * 0.24222 * 4 3 2 32 32 H 1.08005 * 120.00042 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.46690 * 60.00090 * 8 7 6 34 34 H 1.08997 * 109.47493 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.47009 * 300.00340 * 8 7 6 36 36 H 1.08994 * 109.47401 * 205.02352 * 10 9 6 37 37 H 1.09006 * 109.47100 * 325.02441 * 10 9 6 38 38 H 1.08997 * 110.37064 * 322.92856 * 14 13 11 39 39 H 1.09004 * 110.36896 * 85.13919 * 14 13 11 40 40 H 1.09002 * 111.00466 * 81.06386 * 15 14 13 41 41 H 1.09000 * 111.01092 * 204.91316 * 15 14 13 42 42 H 0.96700 * 113.99892 * 298.53889 * 17 16 15 43 43 H 0.97002 * 119.99807 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.88137 * 298.40270 * 26 13 11 45 45 H 1.09005 * 109.87906 * 59.56366 * 26 13 11 46 46 H 1.08000 * 120.00402 * 180.02562 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2909 2.3750 -0.0056 5 6 1.9179 3.6056 -0.0118 6 6 3.3032 3.6781 -0.0113 7 8 3.9206 4.8897 -0.0168 8 6 3.0807 6.0459 -0.0224 9 6 4.0585 2.5151 -0.0056 10 6 5.5634 2.5939 -0.0056 11 6 6.0583 2.7500 1.4093 12 8 5.2668 2.7926 2.3273 13 7 7.3803 2.8413 1.6546 14 6 8.4474 2.8036 0.6381 15 6 9.7066 2.3247 1.4025 16 6 9.5261 3.0296 2.7728 17 8 9.9988 4.3770 2.7144 18 6 10.2291 2.2633 3.8635 19 1 9.6631 1.8559 4.6882 20 6 11.5948 2.0822 3.8086 21 7 12.2840 2.5778 2.8041 22 14 12.4662 1.1328 5.1609 23 1 12.5106 -0.3081 4.8045 24 1 13.8506 1.6478 5.3141 25 1 11.7301 1.3041 6.4392 26 6 7.9970 3.0015 2.9796 27 6 3.4313 1.2842 0.0000 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8900 31 1 0.2124 2.3185 -0.0061 32 1 1.3297 4.5114 -0.0158 33 1 2.4512 6.0419 0.8675 34 1 3.6985 6.9438 -0.0260 35 1 2.4516 6.0336 -0.9125 36 1 5.9751 1.6810 -0.4359 37 1 5.8824 3.4511 -0.5987 38 1 8.1929 2.0985 -0.1532 39 1 8.6097 3.7977 0.2214 40 1 9.7051 1.2408 1.5176 41 1 10.6168 2.6619 0.9065 42 1 10.9405 4.4548 2.5090 43 1 13.2447 2.4501 2.7653 44 1 7.6648 3.9355 3.4326 45 1 7.7266 2.1606 3.6183 46 1 4.0194 0.3784 0.0048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592836914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:19 Heat of formation + Delta-G solvation = -127.762610 kcal Electronic energy + Delta-G solvation = -29260.786314 eV Core-core repulsion = 25116.499626 eV Total energy + Delta-G solvation = -4144.286688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.66654 -39.35122 -38.94568 -37.28112 -36.35052 -34.23747 -32.72936 -32.19867 -30.19590 -29.69306 -28.54040 -27.84965 -27.05663 -26.88932 -24.86468 -22.51948 -22.20056 -21.42966 -19.72974 -18.78866 -17.97150 -17.55609 -17.22400 -16.93952 -16.54979 -15.87268 -15.57743 -15.37040 -14.93208 -14.85858 -14.82710 -14.45790 -14.18261 -13.88146 -13.44169 -13.24529 -12.91405 -12.88669 -12.68197 -12.26599 -12.16355 -12.00449 -11.79816 -11.68733 -11.58221 -11.35921 -11.34126 -11.29496 -10.86694 -10.78788 -10.58228 -10.50509 -10.46912 -10.08133 -9.43697 -9.31067 -8.88258 -8.65127 -8.19729 -7.91705 -7.73863 -6.26746 -4.33906 1.16485 1.44535 3.13139 3.19942 3.21561 3.28956 3.31771 3.33650 3.50208 3.85328 4.29107 4.56578 4.62530 4.86455 4.93784 4.95731 4.99091 5.01976 5.06480 5.10854 5.19282 5.24900 5.36120 5.39939 5.46616 5.59881 5.69825 5.74317 5.80212 5.97498 6.07121 6.11962 6.17662 6.23668 6.29646 6.51281 6.55262 6.76208 6.95855 7.03214 7.19978 7.33167 7.38248 7.43136 7.75275 8.05476 8.20970 8.68209 8.75904 9.32620 9.41557 10.80784 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018088 B = 0.002687 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.586412 B =10419.654441 C =11337.353934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.090 3.910 4 C -0.171 4.171 5 C -0.171 4.171 6 C 0.111 3.889 7 O -0.310 6.310 8 C 0.029 3.971 9 C -0.050 4.050 10 C -0.090 4.090 11 C 0.528 3.472 12 O -0.547 6.547 13 N -0.610 5.610 14 C 0.094 3.906 15 C -0.134 4.134 16 C 0.247 3.753 17 O -0.585 6.585 18 C -0.533 4.533 19 H 0.064 0.936 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.124 3.876 27 C -0.099 4.099 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.381 0.619 43 H 0.267 0.733 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.837 0.577 -11.302 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.045 3.955 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.066 3.934 7 O -0.223 6.223 8 C -0.066 4.066 9 C -0.051 4.051 10 C -0.130 4.130 11 C 0.316 3.684 12 O -0.426 6.426 13 N -0.343 5.343 14 C -0.028 4.028 15 C -0.173 4.173 16 C 0.206 3.794 17 O -0.394 6.394 18 C -0.571 4.571 19 H 0.082 0.918 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C 0.003 3.997 27 C -0.118 4.118 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.231 0.769 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.490 0.603 -10.747 22.265 hybrid contribution 0.623 -0.359 0.527 0.891 sum -18.867 0.244 -10.221 21.459 Atomic orbital electron populations 1.22999 0.78845 1.03690 1.01076 1.86077 1.20947 1.26751 1.89441 1.18757 0.92049 0.84126 1.00532 1.20929 0.99684 0.91696 1.06665 1.20917 0.93050 0.98302 1.06683 1.18634 0.90646 0.85283 0.98864 1.86119 1.35307 1.12094 1.88828 1.23018 0.95894 0.86784 1.00892 1.18442 0.94271 0.89989 1.02437 1.20477 0.91492 1.05025 0.96027 1.19922 0.80890 0.77003 0.90540 1.90667 1.54232 1.51264 1.46422 1.48617 1.04765 1.70935 1.09980 1.22513 0.88820 1.00309 0.91195 1.23290 0.94966 1.00796 0.98255 1.19478 0.87310 0.80693 0.91880 1.86147 1.30689 1.28253 1.94300 1.21515 0.92778 1.34491 1.08350 0.91806 1.24982 0.97319 0.94912 0.95829 1.69703 1.07906 1.45602 1.30356 0.86420 0.78683 0.79820 0.82085 1.20490 1.21044 1.19704 1.22033 0.93781 1.00763 0.83166 1.20078 0.91384 0.97303 1.03015 0.88430 0.92843 0.92942 0.85448 0.85285 0.92819 0.88291 0.92989 0.88107 0.87636 0.92147 0.91939 0.91458 0.89386 0.76884 0.92264 0.92280 0.91148 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.83 10.50 -19.70 -0.21 -4.04 16 3 C 0.09 1.18 6.69 -39.24 -0.26 0.92 16 4 C -0.17 -1.97 9.03 -39.45 -0.36 -2.33 16 5 C -0.17 -2.06 9.03 -39.45 -0.36 -2.42 16 6 C 0.11 1.60 6.66 -39.24 -0.26 1.34 16 7 O -0.31 -4.41 9.63 -19.68 -0.19 -4.60 16 8 C 0.03 0.28 9.81 101.05 0.99 1.27 16 9 C -0.05 -0.75 4.38 -104.49 -0.46 -1.21 16 10 C -0.09 -1.35 4.56 -29.03 -0.13 -1.48 16 11 C 0.53 10.34 7.84 -10.98 -0.09 10.26 16 12 O -0.55 -12.58 16.36 5.56 0.09 -12.49 16 13 N -0.61 -12.38 3.33 -170.52 -0.57 -12.95 16 14 C 0.09 1.71 6.68 -2.53 -0.02 1.69 16 15 C -0.13 -2.89 5.47 -24.59 -0.13 -3.02 16 16 C 0.25 5.99 0.84 -89.93 -0.08 5.91 16 17 O -0.59 -14.75 13.06 -35.23 -0.46 -15.21 16 18 C -0.53 -14.04 8.22 -34.44 -0.28 -14.32 16 19 H 0.06 1.70 7.57 -52.49 -0.40 1.30 16 20 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 21 N -0.90 -22.95 10.69 55.43 0.59 -22.36 16 22 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C 0.12 2.88 6.22 -3.06 -0.02 2.86 16 27 C -0.10 -1.40 9.62 -39.45 -0.38 -1.78 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 30 H 0.05 0.32 7.65 -51.93 -0.40 -0.07 16 31 H 0.13 1.10 6.29 -52.49 -0.33 0.77 16 32 H 0.13 1.21 6.29 -52.48 -0.33 0.87 16 33 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 36 H 0.10 1.25 7.76 -51.93 -0.40 0.85 16 37 H 0.11 1.46 7.69 -51.93 -0.40 1.06 16 38 H 0.06 0.90 7.48 -51.93 -0.39 0.51 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 41 H 0.09 1.95 7.54 -51.93 -0.39 1.56 16 42 H 0.38 9.53 7.49 45.56 0.34 9.88 16 43 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 44 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 45 H 0.07 1.67 7.66 -51.93 -0.40 1.27 16 46 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -31.75 377.87 -6.95 -38.70 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.95 Total: 11.26 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.93 Total: 0.65 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.03 Total: -35.30 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.77 Total: -36.34 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.75 -6.95 -38.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592836914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.064 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds