Wall clock time and date at job start Tue Mar 31 2020 18:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35899 * 116.99952 * 2 1 4 4 C 1.38756 * 120.05521 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94288 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05155 * 359.74936 * 5 4 3 7 7 C 1.38238 * 120.11650 * 0.50500 * 6 5 4 8 8 C 1.50694 * 119.97576 * 179.76521 * 7 6 5 9 9 O 1.42898 * 109.47357 * 269.72891 * 8 7 6 10 10 C 1.42906 * 113.99821 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46699 * 179.97438 * 10 9 8 12 12 O 1.21274 * 120.00042 * 359.71986 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.47427 * 125.64680 * 359.69782 * 13 11 10 15 15 C 1.55128 * 104.72231 * 155.81553 * 14 13 11 16 16 C 1.55154 * 101.48987 * 37.29132 * 15 14 13 17 17 O 1.42904 * 110.71995 * 82.69610 * 16 15 14 18 18 C 1.50695 * 110.87376 * 205.90355 * 16 15 14 19 19 H 1.07997 * 120.00253 * 355.05413 * 18 16 15 20 20 C 1.37880 * 120.00053 * 175.06563 * 18 16 15 21 21 N 1.31521 * 119.99666 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 120.00223 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47035 * 89.99538 * 22 20 18 24 24 H 1.48502 * 109.47275 * 209.99883 * 22 20 18 25 25 H 1.48502 * 109.47019 * 329.99913 * 22 20 18 26 26 C 1.47023 * 125.65065 * 179.97438 * 13 11 10 27 27 C 1.38171 * 120.05138 * 359.49458 * 7 6 5 28 28 H 1.09003 * 109.46813 * 300.00095 * 1 2 3 29 29 H 1.08997 * 109.47130 * 60.00047 * 1 2 3 30 30 H 1.08994 * 109.46954 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.02902 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.97055 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.93679 * 180.27632 * 6 5 4 34 34 H 1.09002 * 109.47402 * 149.72275 * 8 7 6 35 35 H 1.09000 * 109.47281 * 29.72788 * 8 7 6 36 36 H 1.09000 * 109.47490 * 59.99859 * 10 9 8 37 37 H 1.09001 * 109.47232 * 299.99213 * 10 9 8 38 38 H 1.08999 * 110.36527 * 274.74269 * 14 13 11 39 39 H 1.08992 * 110.37284 * 37.06356 * 14 13 11 40 40 H 1.09004 * 111.18924 * 279.18727 * 15 14 13 41 41 H 1.09000 * 110.94355 * 155.28750 * 15 14 13 42 42 H 0.96696 * 113.99883 * 185.02985 * 17 16 15 43 43 H 0.97004 * 119.99591 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.88026 * 300.44758 * 26 13 11 45 45 H 1.08998 * 109.87448 * 61.60907 * 26 13 11 46 46 H 1.08001 * 120.02244 * 180.27247 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6757 0.0063 7 6 4.0560 2.5171 0.0005 8 6 5.5608 2.5981 0.0009 9 8 6.0368 2.6241 -1.3463 10 6 7.4594 2.7002 -1.4586 11 6 7.8478 2.7209 -2.9146 12 8 6.9912 2.6700 -3.7715 13 7 9.1475 2.7909 -3.2644 14 6 10.2862 2.8587 -2.3304 15 6 11.4907 2.3055 -3.1363 16 6 11.2039 2.8751 -4.5508 17 8 11.6674 4.2227 -4.6566 18 6 11.8320 2.0121 -5.6146 19 1 12.4569 1.1774 -5.3335 20 6 11.6091 2.2885 -6.9469 21 7 10.8479 3.3049 -7.2892 22 14 12.3882 1.2193 -8.2657 23 1 11.4718 0.0998 -8.6006 24 1 12.6378 2.0353 -9.4810 25 1 13.6745 0.6727 -7.7637 26 6 9.6643 2.8181 -4.6405 27 6 3.4311 1.2848 0.0000 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2128 2.3204 0.0014 32 1 1.3340 4.5113 0.0019 33 1 3.7922 4.6381 0.0112 34 1 5.9714 1.7289 0.5146 35 1 5.8757 3.5062 0.5150 36 1 7.9090 1.8328 -0.9753 37 1 7.8140 3.6102 -0.9747 38 1 10.4695 3.8903 -2.0300 39 1 10.0973 2.2361 -1.4560 40 1 11.4905 1.2155 -3.1467 41 1 12.4319 2.6902 -2.7437 42 1 11.4441 4.6507 -5.4945 43 1 10.6907 3.4991 -8.2265 44 1 9.3568 1.9162 -5.1698 45 1 9.2904 3.7007 -5.1594 46 1 4.0207 0.3799 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:08 Heat of formation + Delta-G solvation = -133.279517 kcal Electronic energy + Delta-G solvation = -28152.436585 eV Core-core repulsion = 24007.910666 eV Total energy + Delta-G solvation = -4144.525919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.39538 -39.51024 -38.32817 -37.43258 -36.60893 -34.28601 -32.23224 -32.12250 -30.69422 -30.24988 -28.56378 -27.69470 -27.32983 -25.82429 -24.56817 -22.78598 -22.56492 -21.40007 -19.68812 -18.89164 -18.12288 -17.23705 -16.80945 -16.70846 -16.39072 -16.24891 -15.99014 -15.91501 -15.28239 -14.90666 -14.71592 -14.45987 -14.06487 -13.89675 -13.54621 -13.13379 -13.00003 -12.92227 -12.88131 -12.56315 -12.19922 -12.13215 -11.79053 -11.68835 -11.61594 -11.39054 -11.30271 -11.05628 -11.01888 -10.81870 -10.69339 -10.49789 -10.18923 -9.76243 -9.34800 -9.30148 -9.11477 -8.68122 -8.43137 -8.32168 -7.89969 -6.28540 -4.37260 0.98662 1.23845 2.93790 3.10869 3.12516 3.22100 3.29419 3.31823 3.59158 4.17932 4.27880 4.51921 4.59931 4.75125 4.80413 4.82146 4.90190 4.97444 5.02594 5.08615 5.12971 5.14492 5.20021 5.27099 5.32470 5.36537 5.46845 5.68770 5.77815 5.78127 5.98386 6.03902 6.11619 6.18230 6.36405 6.47509 6.48771 6.71299 6.84891 6.90161 7.06565 7.13430 7.26005 7.38509 7.72723 8.00561 8.19253 8.65240 8.75250 9.28189 9.37266 10.79286 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019703 B = 0.002055 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.743698 B =13623.115135 C =14245.415180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.122 3.878 4 C -0.203 4.203 5 C -0.084 4.084 6 C -0.133 4.133 7 C -0.048 4.048 8 C 0.100 3.900 9 O -0.354 6.354 10 C 0.049 3.951 11 C 0.519 3.481 12 O -0.530 6.530 13 N -0.613 5.613 14 C 0.098 3.902 15 C -0.117 4.117 16 C 0.247 3.753 17 O -0.585 6.585 18 C -0.538 4.538 19 H 0.067 0.933 20 C 0.070 3.930 21 N -0.893 5.893 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.106 3.894 27 C -0.128 4.128 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.382 0.618 43 H 0.270 0.730 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 -1.341 18.496 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.077 3.923 4 C -0.222 4.222 5 C -0.102 4.102 6 C -0.151 4.151 7 C -0.048 4.048 8 C 0.023 3.977 9 O -0.273 6.273 10 C -0.031 4.031 11 C 0.306 3.694 12 O -0.406 6.406 13 N -0.348 5.348 14 C -0.025 4.025 15 C -0.155 4.155 16 C 0.207 3.793 17 O -0.394 6.394 18 C -0.576 4.576 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.532 5.532 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.015 4.015 27 C -0.146 4.146 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.233 0.767 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.656 -1.603 18.325 24.156 hybrid contribution -0.008 -0.245 -1.151 1.176 sum -15.664 -1.849 17.175 23.319 Atomic orbital electron populations 1.23053 0.78413 1.03960 1.01309 1.86081 1.21358 1.26883 1.88802 1.18957 0.92209 0.84225 0.96918 1.21261 0.99995 0.92458 1.08499 1.20917 0.94473 0.97055 0.97758 1.21000 0.93770 0.98102 1.02239 1.19323 0.94211 0.92580 0.98679 1.21352 0.90299 1.01260 0.84747 1.88114 1.19361 1.95182 1.24618 1.22248 0.82915 1.02130 0.95810 1.19702 0.81725 0.78107 0.89903 1.90710 1.48637 1.49459 1.51796 1.48760 1.04157 1.71560 1.10331 1.22412 0.87125 1.00530 0.92397 1.22780 0.96302 1.00206 0.96205 1.19509 0.87197 0.81448 0.91141 1.86101 1.81754 1.28265 1.43258 1.21483 1.31373 1.14191 0.90577 0.91521 1.25084 0.94126 0.95136 0.98990 1.69700 1.37025 1.28028 1.18447 0.86397 0.79658 0.80167 0.80660 1.20412 1.20985 1.19689 1.23020 0.97162 1.02147 0.79166 1.20313 0.91403 0.98274 1.04636 0.92726 0.92585 0.88223 0.85482 0.85544 0.85564 0.92026 0.91914 0.90522 0.90531 0.91525 0.92042 0.90376 0.90468 0.76724 0.91975 0.91448 0.91582 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.43 10.50 -19.42 -0.20 -3.64 16 3 C 0.12 1.40 6.69 -39.22 -0.26 1.14 16 4 C -0.20 -1.99 9.04 -39.43 -0.36 -2.35 16 5 C -0.08 -0.81 10.04 -39.60 -0.40 -1.21 16 6 C -0.13 -1.44 9.70 -39.56 -0.38 -1.82 16 7 C -0.05 -0.57 5.51 -104.65 -0.58 -1.14 16 8 C 0.10 1.12 6.06 36.00 0.22 1.34 16 9 O -0.35 -5.62 9.86 -55.14 -0.54 -6.17 16 10 C 0.05 0.71 5.42 36.01 0.20 0.91 16 11 C 0.52 10.53 7.93 -10.98 -0.09 10.45 16 12 O -0.53 -13.25 16.83 -14.35 -0.24 -13.49 16 13 N -0.61 -12.49 3.33 -170.38 -0.57 -13.05 16 14 C 0.10 1.64 6.69 -2.41 -0.02 1.62 16 15 C -0.12 -2.24 6.24 -24.47 -0.15 -2.39 16 16 C 0.25 5.89 0.85 -89.94 -0.08 5.82 16 17 O -0.58 -14.44 13.07 -35.23 -0.46 -14.90 16 18 C -0.54 -13.96 8.13 -34.44 -0.28 -14.24 16 19 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 20 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 21 N -0.89 -23.87 10.96 55.43 0.61 -23.26 16 22 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C 0.11 2.58 5.24 -3.06 -0.02 2.56 16 27 C -0.13 -1.55 9.64 -39.43 -0.38 -1.93 16 28 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.79 7.48 -51.93 -0.39 0.40 16 40 H 0.08 1.44 8.05 -51.93 -0.42 1.02 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.38 9.71 7.45 45.56 0.34 10.05 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.07 1.80 7.81 -51.93 -0.41 1.39 16 45 H 0.07 1.76 7.91 -51.93 -0.41 1.34 16 46 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -33.03 384.83 -8.46 -41.49 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -6.16 Total: 10.08 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.67 Total: 1.66 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.04 Total: -36.31 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -1.45 Total: -38.19 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.03 -8.46 -41.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.790 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds