Wall clock time and date at job start Tue Mar 31 2020 18:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35899 * 116.99952 * 2 1 4 4 C 1.38756 * 120.05521 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94288 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05155 * 359.74936 * 5 4 3 7 7 C 1.38238 * 120.11650 * 0.50500 * 6 5 4 8 8 C 1.50694 * 119.97576 * 179.76521 * 7 6 5 9 9 O 1.42898 * 109.47357 * 269.72891 * 8 7 6 10 10 C 1.42906 * 113.99821 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46699 * 179.97438 * 10 9 8 12 12 O 1.21274 * 120.00042 * 359.71986 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.47427 * 125.64680 * 359.69782 * 13 11 10 15 15 C 1.55128 * 104.72231 * 155.81553 * 14 13 11 16 16 C 1.55154 * 101.48987 * 37.29132 * 15 14 13 17 17 O 1.42904 * 110.71995 * 82.69610 * 16 15 14 18 18 C 1.50695 * 110.87376 * 205.90355 * 16 15 14 19 19 H 1.07997 * 120.00253 * 355.05413 * 18 16 15 20 20 C 1.37880 * 120.00053 * 175.06563 * 18 16 15 21 21 N 1.31521 * 119.99666 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 120.00223 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47035 * 89.99538 * 22 20 18 24 24 H 1.48502 * 109.47275 * 209.99883 * 22 20 18 25 25 H 1.48502 * 109.47019 * 329.99913 * 22 20 18 26 26 C 1.47023 * 125.65065 * 179.97438 * 13 11 10 27 27 C 1.38171 * 120.05138 * 359.49458 * 7 6 5 28 28 H 1.09003 * 109.46813 * 300.00095 * 1 2 3 29 29 H 1.08997 * 109.47130 * 60.00047 * 1 2 3 30 30 H 1.08994 * 109.46954 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.02902 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.97055 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.93679 * 180.27632 * 6 5 4 34 34 H 1.09002 * 109.47402 * 149.72275 * 8 7 6 35 35 H 1.09000 * 109.47281 * 29.72788 * 8 7 6 36 36 H 1.09000 * 109.47490 * 59.99859 * 10 9 8 37 37 H 1.09001 * 109.47232 * 299.99213 * 10 9 8 38 38 H 1.08999 * 110.36527 * 274.74269 * 14 13 11 39 39 H 1.08992 * 110.37284 * 37.06356 * 14 13 11 40 40 H 1.09004 * 111.18924 * 279.18727 * 15 14 13 41 41 H 1.09000 * 110.94355 * 155.28750 * 15 14 13 42 42 H 0.96696 * 113.99883 * 185.02985 * 17 16 15 43 43 H 0.97004 * 119.99591 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.88026 * 300.44758 * 26 13 11 45 45 H 1.08998 * 109.87448 * 61.60907 * 26 13 11 46 46 H 1.08001 * 120.02244 * 180.27247 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6757 0.0063 7 6 4.0560 2.5171 0.0005 8 6 5.5608 2.5981 0.0009 9 8 6.0368 2.6241 -1.3463 10 6 7.4594 2.7002 -1.4586 11 6 7.8478 2.7209 -2.9146 12 8 6.9912 2.6700 -3.7715 13 7 9.1475 2.7909 -3.2644 14 6 10.2862 2.8587 -2.3304 15 6 11.4907 2.3055 -3.1363 16 6 11.2039 2.8751 -4.5508 17 8 11.6674 4.2227 -4.6566 18 6 11.8320 2.0121 -5.6146 19 1 12.4569 1.1774 -5.3335 20 6 11.6091 2.2885 -6.9469 21 7 10.8479 3.3049 -7.2892 22 14 12.3882 1.2193 -8.2657 23 1 11.4718 0.0998 -8.6006 24 1 12.6378 2.0353 -9.4810 25 1 13.6745 0.6727 -7.7637 26 6 9.6643 2.8181 -4.6405 27 6 3.4311 1.2848 0.0000 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2128 2.3204 0.0014 32 1 1.3340 4.5113 0.0019 33 1 3.7922 4.6381 0.0112 34 1 5.9714 1.7289 0.5146 35 1 5.8757 3.5062 0.5150 36 1 7.9090 1.8328 -0.9753 37 1 7.8140 3.6102 -0.9747 38 1 10.4695 3.8903 -2.0300 39 1 10.0973 2.2361 -1.4560 40 1 11.4905 1.2155 -3.1467 41 1 12.4319 2.6902 -2.7437 42 1 11.4441 4.6507 -5.4945 43 1 10.6907 3.4991 -8.2265 44 1 9.3568 1.9162 -5.1698 45 1 9.2904 3.7007 -5.1594 46 1 4.0207 0.3799 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:07 Heat of formation + Delta-G solvation = -156.536618 kcal Electronic energy + Delta-G solvation = -28153.445089 eV Core-core repulsion = 24007.910666 eV Total energy + Delta-G solvation = -4145.534422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19672 -41.01595 -39.43272 -38.75566 -37.79236 -36.08098 -34.23662 -32.95492 -31.92566 -31.40228 -30.02533 -28.96525 -28.20562 -26.97584 -26.11767 -24.11860 -23.55274 -22.16461 -21.46995 -20.38498 -19.15103 -18.93085 -18.11141 -17.73698 -17.56761 -17.12441 -17.08288 -16.87834 -16.65394 -16.33296 -16.15361 -15.95889 -15.20172 -14.89339 -14.76600 -14.66593 -14.54830 -14.34763 -13.77212 -13.64699 -13.51907 -13.38458 -13.12484 -12.97393 -12.86328 -12.73490 -12.50689 -12.39154 -12.33034 -12.28291 -12.06134 -12.00049 -11.74851 -11.16958 -10.92459 -10.72595 -10.65279 -10.27440 -9.93822 -9.59530 -9.20580 -8.27417 -6.43096 0.18872 0.44788 1.39886 1.42017 1.51653 1.58683 1.79388 2.32943 2.36903 2.64311 2.99554 3.16440 3.55284 3.81333 3.83291 3.86754 4.07850 4.08754 4.15616 4.20992 4.21914 4.29566 4.33152 4.35493 4.37515 4.43825 4.45481 4.55171 4.66159 4.71089 4.71304 4.75703 5.01812 5.03773 5.14409 5.24576 5.27736 5.37992 5.42343 5.50997 5.57827 5.74007 5.75713 6.03118 6.09214 6.42308 6.61051 6.68218 7.17376 7.26514 7.34016 8.78519 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019703 B = 0.002055 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.743698 B =13623.115135 C =14245.415180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.107 3.893 4 C -0.205 4.205 5 C -0.086 4.086 6 C -0.146 4.146 7 C -0.066 4.066 8 C 0.098 3.902 9 O -0.394 6.394 10 C 0.061 3.939 11 C 0.508 3.492 12 O -0.592 6.592 13 N -0.615 5.615 14 C 0.102 3.898 15 C -0.113 4.113 16 C 0.231 3.769 17 O -0.586 6.586 18 C -0.556 4.556 19 H 0.068 0.932 20 C 0.023 3.977 21 N -0.917 5.917 22 Si 0.963 3.037 23 H -0.281 1.281 24 H -0.282 1.282 25 H -0.263 1.263 26 C 0.123 3.877 27 C -0.152 4.152 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.117 0.883 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.139 0.861 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.374 0.626 43 H 0.269 0.731 44 H 0.029 0.971 45 H 0.028 0.972 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.206 -1.486 21.197 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.061 3.939 4 C -0.224 4.224 5 C -0.104 4.104 6 C -0.164 4.164 7 C -0.066 4.066 8 C 0.022 3.978 9 O -0.313 6.313 10 C -0.018 4.018 11 C 0.298 3.702 12 O -0.473 6.473 13 N -0.350 5.350 14 C -0.019 4.019 15 C -0.150 4.150 16 C 0.191 3.809 17 O -0.393 6.393 18 C -0.595 4.595 19 H 0.087 0.913 20 C -0.178 4.178 21 N -0.556 5.556 22 Si 0.788 3.212 23 H -0.207 1.207 24 H -0.208 1.208 25 H -0.187 1.187 26 C -0.001 4.001 27 C -0.171 4.171 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.223 0.777 43 H 0.078 0.922 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.620 -1.753 21.086 26.300 hybrid contribution -0.107 -0.211 -1.986 2.000 sum -15.727 -1.964 19.100 24.820 Atomic orbital electron populations 1.23346 0.76365 1.05569 1.02306 1.86048 1.23599 1.26938 1.88820 1.19180 0.92375 0.85080 0.97217 1.21580 1.01274 0.91966 1.07543 1.21301 0.94435 0.98091 0.96602 1.21294 0.94518 0.98378 1.02224 1.19559 0.95007 0.92811 0.99231 1.21587 0.89822 1.03447 0.82906 1.88064 1.19986 1.95622 1.27646 1.22248 0.83017 1.05493 0.91004 1.20931 0.80744 0.76186 0.92323 1.90674 1.50294 1.52095 1.54207 1.48828 1.05573 1.71236 1.09319 1.22659 0.84248 1.02437 0.92600 1.22793 0.98369 1.00551 0.93320 1.19741 0.86473 0.80858 0.93828 1.86089 1.81784 1.28793 1.42669 1.21862 1.31416 1.14604 0.91570 0.91346 1.25845 0.94617 0.96258 1.01077 1.69816 1.37957 1.29263 1.18557 0.85481 0.79000 0.78460 0.78261 1.20666 1.20766 1.18697 1.22493 0.97865 0.98392 0.81323 1.20486 0.92151 0.98509 1.05912 0.91177 0.92030 0.86470 0.83058 0.82870 0.84296 0.90087 0.89301 0.86805 0.86856 0.90145 0.86659 0.89706 0.88877 0.77662 0.92183 0.95290 0.95352 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -7.24 10.50 -92.42 -0.97 -8.21 16 3 C 0.11 2.41 6.69 22.51 0.15 2.56 16 4 C -0.21 -3.73 9.04 22.37 0.20 -3.52 16 5 C -0.09 -1.51 10.04 22.26 0.22 -1.29 16 6 C -0.15 -2.96 9.70 22.28 0.22 -2.74 16 7 C -0.07 -1.51 5.51 -19.88 -0.11 -1.62 16 8 C 0.10 1.97 6.06 71.23 0.43 2.40 16 9 O -0.39 -11.86 9.86 -129.94 -1.28 -13.15 16 10 C 0.06 1.59 5.42 71.24 0.39 1.98 16 11 C 0.51 20.38 7.93 87.66 0.69 21.08 16 12 O -0.59 -30.74 16.83 16.03 0.27 -30.47 16 13 N -0.62 -24.64 3.33 -811.37 -2.70 -27.34 16 14 C 0.10 3.03 6.69 86.93 0.58 3.61 16 15 C -0.11 -4.06 6.24 32.06 0.20 -3.86 16 16 C 0.23 11.09 0.85 -10.35 -0.01 11.08 16 17 O -0.59 -29.21 13.07 -148.98 -1.95 -31.16 16 18 C -0.56 -29.20 8.13 25.60 0.21 -28.99 16 19 H 0.07 3.47 7.78 -2.91 -0.02 3.45 16 20 C 0.02 1.21 5.28 84.65 0.45 1.66 16 21 N -0.92 -50.80 10.96 21.45 0.24 -50.57 16 22 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 26 C 0.12 6.17 5.24 86.73 0.45 6.62 16 27 C -0.15 -3.69 9.64 22.37 0.22 -3.48 16 28 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 29 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 30 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.15 1.86 6.30 -2.91 -0.02 1.84 16 32 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 35 H 0.09 1.29 8.08 -2.39 -0.02 1.27 16 36 H 0.11 2.13 7.85 -2.39 -0.02 2.11 16 37 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.12 2.27 7.48 -2.39 -0.02 2.25 16 40 H 0.08 2.93 8.05 -2.39 -0.02 2.91 16 41 H 0.09 3.06 8.14 -2.39 -0.02 3.05 16 42 H 0.37 19.72 7.45 -74.06 -0.55 19.17 16 43 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.03 1.63 7.81 -2.39 -0.02 1.61 16 45 H 0.03 1.60 7.91 -2.39 -0.02 1.58 16 46 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -77.25 384.83 1.48 -75.77 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.44 Total: 33.69 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 5.41 Total: 6.80 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -2.46 Total: -77.91 kcal Atomic # 8 Polarization: -79.05 SS G_CDS: -3.93 Total: -82.98 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -77.25 1.48 -75.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.765 kcal (2) G-P(sol) polarization free energy of solvation -77.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds