Wall clock time and date at job start Tue Mar 31 2020 18:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35998 * 116.99998 * 2 1 4 4 C 1.38568 * 120.07126 * 0.02562 * 3 2 1 5 5 C 1.38237 * 119.99711 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.14870 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.14642 * 359.67861 * 6 5 4 8 8 C 1.38563 * 119.99477 * 0.60008 * 7 6 5 9 9 O 1.35998 * 120.07177 * 179.69373 * 8 7 6 10 10 C 1.42898 * 117.00227 * 359.72996 * 9 8 7 11 11 C 1.53000 * 109.47469 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47190 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00028 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00322 * 179.97438 * 12 11 10 15 15 C 1.47424 * 125.64379 * 0.02812 * 14 12 11 16 16 C 1.54915 * 104.83134 * 204.09147 * 15 14 12 17 17 C 1.55149 * 101.57953 * 322.99120 * 16 15 14 18 18 O 1.42903 * 110.72153 * 276.95939 * 17 16 15 19 19 C 1.50703 * 110.72200 * 153.86656 * 17 16 15 20 20 H 1.08003 * 119.99580 * 5.09208 * 19 17 16 21 21 C 1.37875 * 120.00485 * 185.09108 * 19 17 16 22 22 N 1.31515 * 120.00283 * 183.77121 * 21 19 17 23 23 Si 1.86808 * 119.99803 * 3.77471 * 21 19 17 24 24 H 1.48502 * 109.46958 * 84.82440 * 23 21 19 25 25 H 1.48495 * 109.47117 * 204.82724 * 23 21 19 26 26 H 1.48502 * 109.46808 * 324.82560 * 23 21 19 27 27 C 1.47020 * 125.65270 * 179.72037 * 14 12 11 28 28 H 1.09002 * 109.47525 * 59.99689 * 1 2 3 29 29 H 1.09003 * 109.47588 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47323 * 299.99965 * 1 2 3 31 31 H 1.07994 * 120.00096 * 359.95714 * 4 3 2 32 32 H 1.08002 * 119.92807 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.92757 * 179.97438 * 6 5 4 34 34 H 1.07996 * 120.00362 * 180.31949 * 7 6 5 35 35 H 1.08999 * 109.46681 * 299.99971 * 10 9 8 36 36 H 1.09008 * 109.47238 * 59.99480 * 10 9 8 37 37 H 1.08997 * 109.46914 * 300.00034 * 11 10 9 38 38 H 1.09001 * 109.46971 * 60.00079 * 11 10 9 39 39 H 1.08999 * 110.36928 * 322.92360 * 15 14 12 40 40 H 1.08993 * 110.36944 * 85.25069 * 15 14 12 41 41 H 1.08997 * 111.00497 * 81.06472 * 16 15 14 42 42 H 1.08998 * 111.00342 * 204.87784 * 16 15 14 43 43 H 0.96699 * 113.99946 * 298.55060 * 18 17 16 44 44 H 0.96994 * 119.99672 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.87802 * 298.39681 * 27 14 12 46 46 H 1.08998 * 109.88586 * 59.55861 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9223 3.6057 0.0011 6 6 3.3028 3.6799 0.0005 7 6 4.0602 2.5234 0.0062 8 6 3.4359 1.2864 -0.0002 9 8 4.1795 0.1477 -0.0010 10 6 5.6003 0.3006 -0.0010 11 6 6.2618 -1.0789 -0.0012 12 6 7.7601 -0.9176 -0.0019 13 8 8.2506 0.1916 -0.0016 14 7 8.5551 -2.0058 -0.0017 15 6 8.0945 -3.4063 -0.0014 16 6 9.2693 -4.2100 0.6100 17 6 10.4962 -3.4625 0.0244 18 8 10.7893 -3.9274 -1.2947 19 6 11.6960 -3.6214 0.9224 20 1 11.6406 -4.2640 1.7887 21 6 12.8642 -2.9466 0.6381 22 7 13.9335 -3.1422 1.3784 23 14 12.9282 -1.7543 -0.7986 24 1 12.4299 -0.4254 -0.3615 25 1 14.3293 -1.6260 -1.2733 26 1 12.0760 -2.2638 -1.9029 27 6 10.0253 -1.9931 -0.0081 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2146 2.3197 0.0003 32 1 1.3341 4.5115 0.0019 33 1 3.7907 4.6434 0.0005 34 1 5.1385 2.5840 0.0110 35 1 5.9064 0.8510 -0.8907 36 1 5.9066 0.8500 0.8893 37 1 5.9556 -1.6288 0.8887 38 1 5.9555 -1.6286 -0.8913 39 1 7.2015 -3.5119 0.6146 40 1 7.8956 -3.7404 -1.0197 41 1 9.2586 -4.1508 1.6983 42 1 9.2478 -5.2477 0.2771 43 1 11.0166 -4.8663 -1.3394 44 1 14.7554 -2.6678 1.1781 45 1 10.3877 -1.5054 -0.9130 46 1 10.3953 -1.4676 0.8723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:48 Heat of formation + Delta-G solvation = -118.257116 kcal Electronic energy + Delta-G solvation = -28554.550945 eV Core-core repulsion = 24410.676447 eV Total energy + Delta-G solvation = -4143.874499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.76363 -39.81478 -38.70533 -37.64545 -37.02563 -34.61299 -32.48508 -32.25666 -30.57347 -30.32658 -29.73628 -28.61093 -27.48791 -25.68406 -24.02600 -22.80131 -22.53049 -21.70702 -19.83272 -19.23818 -18.69473 -17.65318 -17.27697 -16.76072 -16.61389 -16.42288 -15.98301 -15.64103 -15.14558 -14.99938 -14.92624 -14.70478 -14.53688 -14.19487 -13.96403 -13.31814 -13.14261 -12.96875 -12.77092 -12.52193 -12.42706 -12.22526 -12.05708 -11.94586 -11.80345 -11.46866 -11.43173 -11.39093 -11.19818 -10.97910 -10.85219 -10.67478 -10.32528 -10.18452 -9.64556 -9.10618 -9.01354 -8.76721 -8.50997 -8.21152 -8.05377 -6.25457 -4.38246 1.02210 1.18862 2.74269 2.85211 2.99733 3.32887 3.41675 3.47967 3.57704 3.60915 4.40099 4.49517 4.58541 4.63382 4.77630 4.83398 4.83990 4.85959 4.91023 5.05089 5.07916 5.14820 5.15899 5.18257 5.21776 5.33441 5.40605 5.54276 5.64253 5.66873 5.68869 5.90292 5.93279 6.02323 6.04934 6.24029 6.41452 6.43278 6.49081 6.57240 6.68373 6.83676 7.00489 7.36320 7.44207 7.87422 8.15662 8.39731 8.69181 8.85717 9.37561 10.84565 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.002273 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.123145 B =12314.817992 C =13164.595962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.095 3.905 4 C -0.175 4.175 5 C -0.122 4.122 6 C -0.115 4.115 7 C -0.172 4.172 8 C 0.108 3.892 9 O -0.306 6.306 10 C 0.075 3.925 11 C -0.133 4.133 12 C 0.527 3.473 13 O -0.551 6.551 14 N -0.608 5.608 15 C 0.098 3.902 16 C -0.146 4.146 17 C 0.215 3.785 18 O -0.574 6.574 19 C -0.552 4.552 20 H 0.081 0.919 21 C 0.090 3.910 22 N -0.884 5.884 23 Si 0.864 3.136 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.228 1.228 27 C 0.112 3.888 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.139 0.861 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.366 0.634 44 H 0.268 0.732 45 H 0.061 0.939 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.410 6.699 -3.190 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.050 3.950 4 C -0.194 4.194 5 C -0.140 4.140 6 C -0.134 4.134 7 C -0.191 4.191 8 C 0.062 3.938 9 O -0.220 6.220 10 C -0.001 4.001 11 C -0.173 4.173 12 C 0.315 3.685 13 O -0.430 6.430 14 N -0.341 5.341 15 C -0.024 4.024 16 C -0.184 4.184 17 C 0.175 3.825 18 O -0.380 6.380 19 C -0.589 4.589 20 H 0.099 0.901 21 C -0.116 4.116 22 N -0.520 5.520 23 Si 0.690 3.310 24 H -0.205 1.205 25 H -0.222 1.222 26 H -0.151 1.151 27 C -0.010 4.010 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.213 0.787 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -26.109 7.606 -3.303 27.394 hybrid contribution 0.251 0.365 -0.440 0.624 sum -25.858 7.972 -3.743 27.317 Atomic orbital electron populations 1.23055 0.78725 1.03982 1.01062 1.86193 1.20863 1.25887 1.89034 1.18276 0.89131 0.85278 1.02334 1.21046 0.99833 0.91593 1.06928 1.20845 0.94589 0.96951 1.01626 1.20905 0.93708 0.97990 1.00769 1.21252 1.01057 0.91110 1.05678 1.18240 0.88134 0.86202 1.01221 1.86071 1.18795 1.28425 1.88740 1.22470 0.77146 0.97455 1.03007 1.21410 0.91972 0.98025 1.05907 1.19829 0.87984 0.83665 0.77021 1.90702 1.76615 1.24469 1.51252 1.48630 1.08086 1.05965 1.71371 1.22408 0.98101 0.81140 1.00785 1.23332 0.94961 0.98754 1.01343 1.19977 0.92533 0.88394 0.81638 1.86513 1.91339 1.29389 1.30769 1.21192 0.94692 1.30909 1.12125 0.90088 1.24979 0.95096 0.95752 0.95754 1.69913 1.01703 1.41293 1.39060 0.87227 0.77396 0.81233 0.85112 1.20470 1.22212 1.15091 1.22634 0.77309 0.99083 1.01948 0.92825 0.88201 0.92801 0.84916 0.85675 0.85500 0.84280 0.91048 0.90970 0.87815 0.87917 0.91263 0.91348 0.90135 0.90441 0.78682 0.92241 0.92050 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.49 10.28 -34.24 -0.35 -3.84 16 3 C 0.10 1.11 6.70 -39.12 -0.26 0.84 16 4 C -0.18 -1.59 9.04 -39.46 -0.36 -1.94 16 5 C -0.12 -1.04 10.04 -39.58 -0.40 -1.43 16 6 C -0.12 -1.08 10.04 -39.57 -0.40 -1.48 16 7 C -0.17 -1.93 9.04 -39.46 -0.36 -2.29 16 8 C 0.11 1.38 6.70 -39.12 -0.26 1.11 16 9 O -0.31 -4.17 9.92 -34.23 -0.34 -4.51 16 10 C 0.07 0.97 4.03 37.16 0.15 1.12 16 11 C -0.13 -1.73 5.08 -27.88 -0.14 -1.88 16 12 C 0.53 9.34 7.85 -10.99 -0.09 9.25 16 13 O -0.55 -11.66 16.31 5.56 0.09 -11.57 16 14 N -0.61 -11.30 3.33 -170.52 -0.57 -11.87 16 15 C 0.10 1.48 6.68 -2.53 -0.02 1.46 16 16 C -0.15 -2.50 6.22 -24.58 -0.15 -2.66 16 17 C 0.21 4.68 0.68 -89.94 -0.06 4.62 16 18 O -0.57 -12.14 10.47 -35.23 -0.37 -12.51 16 19 C -0.55 -14.46 8.72 -34.44 -0.30 -14.76 16 20 H 0.08 2.27 8.03 -52.48 -0.42 1.85 16 21 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 22 N -0.88 -26.12 13.96 55.43 0.77 -25.35 16 23 Si 0.86 21.75 23.99 -169.99 -4.08 17.67 16 24 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.30 -7.47 7.11 56.52 0.40 -7.06 16 26 H -0.23 -5.62 5.40 56.52 0.31 -5.32 16 27 C 0.11 2.51 4.39 -3.06 -0.01 2.50 16 28 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 31 H 0.13 0.85 6.30 -52.49 -0.33 0.51 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.14 1.49 6.30 -52.49 -0.33 1.16 16 35 H 0.07 0.94 7.63 -51.93 -0.40 0.54 16 36 H 0.07 0.95 7.61 -51.92 -0.40 0.55 16 37 H 0.10 1.19 7.85 -51.93 -0.41 0.78 16 38 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 0.83 7.48 -51.93 -0.39 0.44 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.37 6.49 9.10 45.56 0.41 6.90 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.06 1.48 5.70 -51.93 -0.30 1.19 16 46 H 0.08 2.07 7.62 -51.93 -0.40 1.67 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -34.10 372.32 -6.92 -41.02 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.93 Total: 7.30 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.76 Total: -1.95 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.21 Total: -37.22 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.97 Total: -32.43 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.08 Total: 17.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.10 -6.92 -41.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.237 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds