Wall clock time and date at job start Tue Mar 31 2020 18:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35998 * 116.99998 * 2 1 4 4 C 1.38568 * 120.07126 * 0.02562 * 3 2 1 5 5 C 1.38237 * 119.99711 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.14870 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.14642 * 359.67861 * 6 5 4 8 8 C 1.38563 * 119.99477 * 0.60008 * 7 6 5 9 9 O 1.35998 * 120.07177 * 179.69373 * 8 7 6 10 10 C 1.42898 * 117.00227 * 359.72996 * 9 8 7 11 11 C 1.53000 * 109.47469 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47190 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00028 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00322 * 179.97438 * 12 11 10 15 15 C 1.47424 * 125.64379 * 0.02812 * 14 12 11 16 16 C 1.54915 * 104.83134 * 204.09147 * 15 14 12 17 17 C 1.55149 * 101.57953 * 322.99120 * 16 15 14 18 18 O 1.42903 * 110.72153 * 276.95939 * 17 16 15 19 19 C 1.50703 * 110.72200 * 153.86656 * 17 16 15 20 20 H 1.08003 * 119.99580 * 5.09208 * 19 17 16 21 21 C 1.37875 * 120.00485 * 185.09108 * 19 17 16 22 22 N 1.31515 * 120.00283 * 183.77121 * 21 19 17 23 23 Si 1.86808 * 119.99803 * 3.77471 * 21 19 17 24 24 H 1.48502 * 109.46958 * 84.82440 * 23 21 19 25 25 H 1.48495 * 109.47117 * 204.82724 * 23 21 19 26 26 H 1.48502 * 109.46808 * 324.82560 * 23 21 19 27 27 C 1.47020 * 125.65270 * 179.72037 * 14 12 11 28 28 H 1.09002 * 109.47525 * 59.99689 * 1 2 3 29 29 H 1.09003 * 109.47588 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47323 * 299.99965 * 1 2 3 31 31 H 1.07994 * 120.00096 * 359.95714 * 4 3 2 32 32 H 1.08002 * 119.92807 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.92757 * 179.97438 * 6 5 4 34 34 H 1.07996 * 120.00362 * 180.31949 * 7 6 5 35 35 H 1.08999 * 109.46681 * 299.99971 * 10 9 8 36 36 H 1.09008 * 109.47238 * 59.99480 * 10 9 8 37 37 H 1.08997 * 109.46914 * 300.00034 * 11 10 9 38 38 H 1.09001 * 109.46971 * 60.00079 * 11 10 9 39 39 H 1.08999 * 110.36928 * 322.92360 * 15 14 12 40 40 H 1.08993 * 110.36944 * 85.25069 * 15 14 12 41 41 H 1.08997 * 111.00497 * 81.06472 * 16 15 14 42 42 H 1.08998 * 111.00342 * 204.87784 * 16 15 14 43 43 H 0.96699 * 113.99946 * 298.55060 * 18 17 16 44 44 H 0.96994 * 119.99672 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.87802 * 298.39681 * 27 14 12 46 46 H 1.08998 * 109.88586 * 59.55861 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9223 3.6057 0.0011 6 6 3.3028 3.6799 0.0005 7 6 4.0602 2.5234 0.0062 8 6 3.4359 1.2864 -0.0002 9 8 4.1795 0.1477 -0.0010 10 6 5.6003 0.3006 -0.0010 11 6 6.2618 -1.0789 -0.0012 12 6 7.7601 -0.9176 -0.0019 13 8 8.2506 0.1916 -0.0016 14 7 8.5551 -2.0058 -0.0017 15 6 8.0945 -3.4063 -0.0014 16 6 9.2693 -4.2100 0.6100 17 6 10.4962 -3.4625 0.0244 18 8 10.7893 -3.9274 -1.2947 19 6 11.6960 -3.6214 0.9224 20 1 11.6406 -4.2640 1.7887 21 6 12.8642 -2.9466 0.6381 22 7 13.9335 -3.1422 1.3784 23 14 12.9282 -1.7543 -0.7986 24 1 12.4299 -0.4254 -0.3615 25 1 14.3293 -1.6260 -1.2733 26 1 12.0760 -2.2638 -1.9029 27 6 10.0253 -1.9931 -0.0081 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2146 2.3197 0.0003 32 1 1.3341 4.5115 0.0019 33 1 3.7907 4.6434 0.0005 34 1 5.1385 2.5840 0.0110 35 1 5.9064 0.8510 -0.8907 36 1 5.9066 0.8500 0.8893 37 1 5.9556 -1.6288 0.8887 38 1 5.9555 -1.6286 -0.8913 39 1 7.2015 -3.5119 0.6146 40 1 7.8956 -3.7404 -1.0197 41 1 9.2586 -4.1508 1.6983 42 1 9.2478 -5.2477 0.2771 43 1 11.0166 -4.8663 -1.3394 44 1 14.7554 -2.6678 1.1781 45 1 10.3877 -1.5054 -0.9130 46 1 10.3953 -1.4676 0.8723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:47 Heat of formation + Delta-G solvation = -143.857040 kcal Electronic energy + Delta-G solvation = -28555.661041 eV Core-core repulsion = 24410.676447 eV Total energy + Delta-G solvation = -4144.984595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.59930 -41.19328 -39.64888 -39.09429 -37.80933 -36.21976 -34.55659 -33.39309 -31.72993 -31.30188 -30.66754 -30.17120 -28.04252 -27.32741 -25.37499 -24.13847 -23.28166 -22.58792 -21.53959 -20.47961 -19.68528 -19.19455 -18.57224 -17.84050 -17.70404 -17.37636 -17.24975 -16.77492 -16.45846 -16.25236 -16.19401 -15.71765 -15.66433 -15.28742 -15.13398 -14.95500 -14.50570 -14.33146 -13.98239 -13.84260 -13.60828 -13.53063 -13.23376 -13.01009 -12.96938 -12.90433 -12.69340 -12.43241 -12.13158 -12.11593 -12.02676 -11.99958 -11.99225 -11.80946 -11.15385 -10.99983 -10.87570 -10.28078 -9.75682 -9.72682 -8.84469 -8.43515 -6.55360 0.27832 0.43373 1.28151 1.34291 1.47603 1.54541 1.63321 2.28635 2.36951 2.37281 2.73732 2.93405 3.39802 3.56580 3.74626 3.78365 3.86732 3.90813 4.02844 4.06247 4.19085 4.26043 4.30191 4.36023 4.41123 4.43493 4.46049 4.48186 4.59523 4.65216 4.67644 4.75484 4.77503 4.81435 4.97242 5.10505 5.20016 5.22810 5.32666 5.37998 5.50555 5.52297 5.72784 6.04766 6.05635 6.47749 6.57746 6.58811 6.99213 7.15233 7.31245 8.70367 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.002273 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.123145 B =12314.817992 C =13164.595962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.080 3.920 4 C -0.173 4.173 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.184 4.184 8 C 0.072 3.928 9 O -0.316 6.316 10 C 0.080 3.920 11 C -0.118 4.118 12 C 0.523 3.477 13 O -0.594 6.594 14 N -0.612 5.612 15 C 0.101 3.899 16 C -0.138 4.138 17 C 0.212 3.788 18 O -0.578 6.578 19 C -0.542 4.542 20 H 0.055 0.945 21 C 0.043 3.957 22 N -0.929 5.929 23 Si 0.915 3.085 24 H -0.293 1.293 25 H -0.297 1.297 26 H -0.216 1.216 27 C 0.115 3.885 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.383 0.617 44 H 0.268 0.732 45 H 0.040 0.960 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.301 6.513 -4.189 31.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.035 3.965 4 C -0.191 4.191 5 C -0.134 4.134 6 C -0.141 4.141 7 C -0.203 4.203 8 C 0.027 3.973 9 O -0.231 6.231 10 C 0.005 3.995 11 C -0.157 4.157 12 C 0.313 3.687 13 O -0.476 6.476 14 N -0.345 5.345 15 C -0.020 4.020 16 C -0.177 4.177 17 C 0.171 3.829 18 O -0.386 6.386 19 C -0.580 4.580 20 H 0.073 0.927 21 C -0.158 4.158 22 N -0.567 5.567 23 Si 0.742 3.258 24 H -0.221 1.221 25 H -0.224 1.224 26 H -0.139 1.139 27 C -0.009 4.009 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.175 0.825 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.125 0.875 43 H 0.232 0.768 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -30.042 7.382 -4.317 31.235 hybrid contribution 1.348 0.445 -0.080 1.422 sum -28.694 7.826 -4.397 30.065 Atomic orbital electron populations 1.23350 0.76474 1.05486 1.02325 1.86144 1.23319 1.26167 1.89145 1.18540 0.88980 0.86279 1.02693 1.21422 1.01206 0.90894 1.05589 1.21271 0.94409 0.98043 0.99646 1.21226 0.94445 0.98151 1.00291 1.21352 1.01078 0.91620 1.06261 1.18598 0.88926 0.86302 1.03460 1.86013 1.18491 1.29245 1.89348 1.22316 0.77519 0.97417 1.02286 1.21333 0.87803 0.98443 1.08117 1.20673 0.89775 0.82683 0.75536 1.90682 1.77747 1.26245 1.52936 1.48711 1.06323 1.07962 1.71466 1.22660 0.98379 0.78255 1.02710 1.23272 0.93251 1.00265 1.00863 1.19816 0.92616 0.89066 0.81394 1.86447 1.91489 1.31006 1.29664 1.21537 0.96044 1.28819 1.11608 0.92661 1.25610 0.95275 0.97261 0.97644 1.70014 1.02442 1.43187 1.41072 0.86438 0.77048 0.78996 0.83327 1.22065 1.22385 1.13881 1.22225 0.80378 0.98904 0.99367 0.91475 0.86757 0.91486 0.82091 0.82504 0.83572 0.84907 0.91861 0.91873 0.85411 0.85495 0.87092 0.89278 0.90887 0.87488 0.76804 0.92320 0.94166 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.14 10.28 -79.67 -0.82 -7.96 16 3 C 0.08 1.77 6.70 22.57 0.15 1.92 16 4 C -0.17 -2.69 9.04 22.35 0.20 -2.48 16 5 C -0.12 -1.64 10.04 22.27 0.22 -1.42 16 6 C -0.12 -2.12 10.04 22.28 0.22 -1.90 16 7 C -0.18 -4.13 9.04 22.35 0.20 -3.93 16 8 C 0.07 1.83 6.70 22.57 0.15 1.98 16 9 O -0.32 -8.47 9.92 -79.66 -0.79 -9.26 16 10 C 0.08 2.07 4.03 71.98 0.29 2.36 16 11 C -0.12 -2.80 5.08 29.85 0.15 -2.65 16 12 C 0.52 18.03 7.85 87.66 0.69 18.72 16 13 O -0.59 -25.61 16.31 -3.03 -0.05 -25.66 16 14 N -0.61 -21.82 3.33 -811.80 -2.70 -24.52 16 15 C 0.10 2.65 6.68 86.86 0.58 3.23 16 16 C -0.14 -4.38 6.22 31.99 0.20 -4.18 16 17 C 0.21 9.02 0.68 -10.35 -0.01 9.01 16 18 O -0.58 -23.29 10.47 -148.98 -1.56 -24.85 16 19 C -0.54 -28.80 8.72 25.60 0.22 -28.58 16 20 H 0.06 3.17 8.03 -2.91 -0.02 3.15 16 21 C 0.04 2.47 5.47 84.65 0.46 2.93 16 22 N -0.93 -56.60 13.96 21.45 0.30 -56.30 16 23 Si 0.92 46.34 23.99 68.60 1.65 47.99 16 24 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 25 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 26 H -0.22 -10.45 5.40 99.48 0.54 -9.91 16 27 C 0.11 5.16 4.39 86.73 0.38 5.54 16 28 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.52 7.66 -2.38 -0.02 0.50 16 31 H 0.16 1.46 6.30 -2.91 -0.02 1.44 16 32 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 33 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.13 2.99 6.30 -2.91 -0.02 2.97 16 35 H 0.06 1.69 7.63 -2.39 -0.02 1.67 16 36 H 0.06 1.70 7.61 -2.38 -0.02 1.68 16 37 H 0.13 2.48 7.85 -2.39 -0.02 2.46 16 38 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.11 2.06 7.48 -2.39 -0.02 2.04 16 40 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.07 2.43 8.04 -2.39 -0.02 2.41 16 42 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.38 12.60 9.10 -74.06 -0.67 11.92 16 44 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.04 1.96 5.70 -2.39 -0.01 1.95 16 46 H 0.05 2.61 7.62 -2.39 -0.02 2.60 16 Total: -1.00 -77.90 372.32 1.42 -76.48 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.16 Total: 22.23 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 5.24 Total: 1.86 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -2.40 Total: -80.82 kcal Atomic # 8 Polarization: -64.51 SS G_CDS: -3.22 Total: -67.73 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.65 Total: 47.99 kcal Total: -77.90 1.42 -76.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.379 kcal (2) G-P(sol) polarization free energy of solvation -77.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds