Wall clock time and date at job start Tue Mar 31 2020 19:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42910 * 114.00019 * 2 1 4 4 C 1.52996 * 109.46980 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47593 * 65.00046 * 4 3 2 6 6 C 1.35904 * 117.00240 * 180.02562 * 5 4 3 7 7 C 1.38855 * 119.98333 * 359.97438 * 6 5 4 8 8 C 1.38247 * 120.23643 * 180.02562 * 7 6 5 9 9 C 1.38011 * 120.20666 * 0.02562 * 8 7 6 10 10 C 1.39557 * 119.96829 * 359.97438 * 9 8 7 11 11 C 1.47857 * 120.12284 * 179.97438 * 10 9 8 12 12 O 1.21547 * 120.00225 * 207.05532 * 11 10 9 13 13 N 1.34781 * 119.99592 * 27.05426 * 11 10 9 14 14 C 1.47433 * 125.64760 * 355.95147 * 13 11 10 15 15 C 1.54904 * 104.82811 * 155.91342 * 14 13 11 16 16 C 1.55159 * 101.58563 * 37.01245 * 15 14 13 17 17 O 1.42894 * 110.72312 * 83.03531 * 16 15 14 18 18 C 1.50701 * 110.72291 * 206.13591 * 16 15 14 19 19 H 1.08008 * 119.99652 * 357.13279 * 18 16 15 20 20 C 1.37877 * 120.00116 * 176.86212 * 18 16 15 21 21 N 1.31505 * 120.00050 * 354.43776 * 20 18 16 22 22 Si 1.86796 * 119.99838 * 174.44417 * 20 18 16 23 23 H 1.48504 * 109.47398 * 94.99043 * 22 20 18 24 24 H 1.48506 * 109.47017 * 214.99283 * 22 20 18 25 25 H 1.48504 * 109.47389 * 334.98889 * 22 20 18 26 26 C 1.47320 * 125.61596 * 176.18716 * 13 11 10 27 27 C 1.38455 * 119.98656 * 180.27971 * 6 5 4 28 28 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47080 * 300.00157 * 1 2 3 30 30 H 1.09001 * 109.47248 * 60.00160 * 1 2 3 31 31 H 1.08994 * 109.46447 * 59.99617 * 3 2 1 32 32 H 1.09001 * 109.46715 * 299.99991 * 3 2 1 33 33 H 1.08997 * 109.47114 * 304.99569 * 4 3 2 34 34 H 1.09001 * 109.46654 * 185.00024 * 4 3 2 35 35 H 1.07995 * 119.88293 * 0.02562 * 7 6 5 36 36 H 1.08002 * 119.89725 * 180.02562 * 8 7 6 37 37 H 1.07998 * 120.01493 * 179.97438 * 9 8 7 38 38 H 1.09000 * 110.36436 * 37.07618 * 14 13 11 39 39 H 1.09001 * 110.36369 * 274.74942 * 14 13 11 40 40 H 1.08999 * 111.00790 * 278.93170 * 15 14 13 41 41 H 1.09007 * 111.03451 * 155.09671 * 15 14 13 42 42 H 0.96699 * 114.00091 * 182.44348 * 17 16 15 43 43 H 0.96995 * 120.00431 * 180.02562 * 21 20 18 44 44 H 1.08995 * 110.06383 * 61.67170 * 26 13 11 45 45 H 1.09007 * 109.84324 * 300.40994 * 26 13 11 46 46 H 1.08004 * 120.10138 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 5.3020 0.3978 -1.3836 7 6 6.1820 0.7949 -0.3856 8 6 7.5432 0.6129 -0.5449 9 6 8.0364 0.0356 -1.6973 10 6 7.1597 -0.3667 -2.7058 11 6 7.6844 -0.9850 -3.9422 12 8 7.0601 -0.8914 -4.9808 13 7 8.8551 -1.6524 -3.9173 14 6 9.7521 -1.7709 -2.7533 15 6 10.5651 -3.0644 -3.0093 16 6 10.7700 -3.0046 -4.5462 17 8 11.8830 -2.1713 -4.8758 18 6 10.9558 -4.3883 -5.1136 19 1 10.9803 -5.2434 -4.4543 20 6 11.0890 -4.5630 -6.4747 21 7 10.9448 -3.5385 -7.2865 22 14 11.4740 -6.2552 -7.1658 23 1 10.2103 -6.9280 -7.5606 24 1 12.3531 -6.1161 -8.3546 25 1 12.1647 -7.0669 -6.1317 26 6 9.4520 -2.3801 -5.0507 27 6 5.7865 -0.1775 -2.5460 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5683 0.8409 34 1 3.9785 2.1766 0.0889 35 1 5.8018 1.2476 0.5181 36 1 8.2227 0.9234 0.2351 37 1 9.1003 -0.1048 -1.8186 38 1 9.1719 -1.8630 -1.8352 39 1 10.4175 -0.9093 -2.6979 40 1 9.9933 -3.9479 -2.7254 41 1 11.5211 -3.0356 -2.4863 42 1 12.0310 -2.0704 -5.8261 43 1 11.0381 -3.6614 -8.2440 44 1 9.6579 -1.6917 -5.8703 45 1 8.7737 -3.1653 -5.3848 46 1 5.1034 -0.4827 -3.3249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:56 Heat of formation + Delta-G solvation = -125.253769 kcal Electronic energy + Delta-G solvation = -28640.215819 eV Core-core repulsion = 24496.037922 eV Total energy + Delta-G solvation = -4144.177896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47231 -39.44356 -38.22310 -37.37986 -36.74879 -34.37860 -32.23346 -31.59198 -31.19576 -30.00526 -29.52483 -27.70779 -26.73891 -25.47763 -24.21531 -23.09019 -22.48709 -21.61736 -19.80740 -19.43085 -18.00087 -17.20998 -17.19067 -16.57383 -16.38813 -16.02676 -15.57027 -15.47527 -15.41041 -14.98803 -14.77731 -14.70958 -14.14641 -13.77529 -13.37329 -13.21703 -13.01885 -12.94181 -12.77552 -12.58267 -12.29665 -12.08229 -11.94368 -11.72928 -11.54354 -11.33832 -11.13226 -11.03767 -10.99782 -10.67726 -10.62708 -10.50332 -10.17748 -10.11496 -9.44163 -9.28692 -9.00166 -8.71066 -8.32550 -8.26326 -7.89064 -6.28284 -4.36960 0.95045 1.39042 2.87341 3.16896 3.21445 3.29572 3.31710 3.32800 3.63720 3.94263 4.27710 4.44350 4.66178 4.68523 4.74362 4.83338 4.87934 4.96178 4.98320 5.00108 5.02212 5.16565 5.20493 5.32260 5.39039 5.43042 5.47779 5.70536 5.81595 5.90600 5.96053 6.10475 6.18226 6.31859 6.41307 6.49628 6.57735 6.71011 6.76060 6.86643 6.97577 7.27153 7.28290 7.39079 7.73008 8.00039 8.18625 8.64618 8.71426 9.27982 9.35407 10.78929 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.002307 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.406500 B =12132.959087 C =12839.170997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.061 3.939 5 O -0.305 6.305 6 C 0.120 3.880 7 C -0.195 4.195 8 C -0.088 4.088 9 C -0.138 4.138 10 C -0.078 4.078 11 C 0.560 3.440 12 O -0.544 6.544 13 N -0.603 5.603 14 C 0.093 3.907 15 C -0.119 4.119 16 C 0.247 3.753 17 O -0.584 6.584 18 C -0.539 4.539 19 H 0.067 0.933 20 C 0.070 3.930 21 N -0.892 5.892 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.105 3.895 27 C -0.097 4.097 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.145 0.855 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.382 0.618 43 H 0.270 0.730 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.310 10.794 17.408 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.015 4.015 5 O -0.219 6.219 6 C 0.075 3.925 7 C -0.214 4.214 8 C -0.106 4.106 9 C -0.156 4.156 10 C -0.081 4.081 11 C 0.348 3.652 12 O -0.423 6.423 13 N -0.335 5.335 14 C -0.030 4.030 15 C -0.157 4.157 16 C 0.207 3.793 17 O -0.393 6.393 18 C -0.577 4.577 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.531 5.531 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.016 4.016 27 C -0.117 4.117 28 H 0.106 0.894 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.162 0.838 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.232 0.768 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.694 10.743 17.158 24.441 hybrid contribution -0.061 -0.524 -0.853 1.003 sum -13.756 10.220 16.305 23.654 Atomic orbital electron populations 1.22767 0.80764 1.03108 0.99927 1.87988 1.19875 1.26990 1.95399 1.22578 0.91571 0.85889 1.01417 1.22829 0.93733 0.98191 0.86717 1.86146 1.19900 1.77048 1.38829 1.18775 0.82439 0.96794 0.94444 1.21337 0.94333 1.06154 0.99542 1.20878 0.94485 0.97791 0.97469 1.21882 1.01112 0.99463 0.93185 1.19830 0.93176 1.00112 0.94976 1.17849 0.80489 0.79053 0.87836 1.90761 1.58558 1.60623 1.32346 1.48786 1.19130 1.50561 1.15020 1.22698 0.92236 0.99301 0.88732 1.22792 0.99255 0.95566 0.98069 1.19509 0.81914 0.88790 0.89131 1.86102 1.51383 1.71531 1.30260 1.21499 1.51428 0.92426 0.92328 0.91483 1.25080 0.93601 0.97686 0.96969 1.69743 1.48541 1.30584 1.04207 0.86399 0.78415 0.83556 0.78607 1.20527 1.20926 1.19637 1.23128 0.96574 0.94764 0.87093 1.20420 0.94477 1.00385 0.96395 0.89391 0.94118 0.93847 0.91119 0.91964 0.91024 0.90413 0.85469 0.85247 0.83775 0.90972 0.91300 0.90372 0.90399 0.76830 0.92001 0.91304 0.91255 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.88 10.67 -40.08 -0.43 -4.30 16 3 C 0.06 0.46 6.32 37.16 0.23 0.70 16 4 C 0.06 0.51 5.12 37.16 0.19 0.70 16 5 O -0.31 -3.90 10.10 -24.28 -0.25 -4.14 16 6 C 0.12 1.63 6.68 -39.27 -0.26 1.36 16 7 C -0.19 -2.14 9.03 -39.35 -0.36 -2.50 16 8 C -0.09 -0.98 10.03 -39.66 -0.40 -1.37 16 9 C -0.14 -1.90 7.93 -39.17 -0.31 -2.21 16 10 C -0.08 -1.32 5.71 -104.99 -0.60 -1.91 16 11 C 0.56 11.77 7.65 -12.32 -0.09 11.67 16 12 O -0.54 -13.35 16.98 5.32 0.09 -13.26 16 13 N -0.60 -12.64 3.33 -171.38 -0.57 -13.21 16 14 C 0.09 1.61 5.01 -2.53 -0.01 1.60 16 15 C -0.12 -2.32 6.23 -24.58 -0.15 -2.48 16 16 C 0.25 5.90 0.85 -89.93 -0.08 5.83 16 17 O -0.58 -14.39 13.08 -35.23 -0.46 -14.85 16 18 C -0.54 -13.98 8.11 -34.44 -0.28 -14.26 16 19 H 0.07 1.71 7.78 -52.48 -0.41 1.30 16 20 C 0.07 1.82 5.25 -17.82 -0.09 1.73 16 21 N -0.89 -23.76 10.98 55.43 0.61 -23.15 16 22 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C 0.11 2.57 5.24 -2.90 -0.02 2.56 16 27 C -0.10 -1.56 9.53 -39.02 -0.37 -1.94 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.56 7.66 -51.93 -0.40 0.16 16 34 H 0.08 0.47 7.66 -51.93 -0.40 0.07 16 35 H 0.13 1.00 6.28 -52.49 -0.33 0.67 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.14 1.87 4.53 -52.49 -0.24 1.63 16 38 H 0.07 1.06 6.12 -51.93 -0.32 0.74 16 39 H 0.07 1.13 7.31 -51.93 -0.38 0.75 16 40 H 0.08 1.48 8.04 -51.93 -0.42 1.07 16 41 H 0.08 1.42 8.14 -51.92 -0.42 1.00 16 42 H 0.38 9.65 7.49 45.56 0.34 9.99 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.07 1.83 7.92 -51.93 -0.41 1.42 16 45 H 0.07 1.85 7.81 -51.92 -0.41 1.45 16 46 H 0.14 2.37 7.88 -52.48 -0.41 1.96 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -31.94 377.38 -7.69 -39.63 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.87 Total: 11.37 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.48 Total: 0.81 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.04 Total: -36.37 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -1.04 Total: -36.56 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.94 -7.69 -39.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.619 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds